RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 PBRM1Q86U86 1689 aa12.64□□□□□ -0.39
LMO3-220ENST00000539232 SHROOM2Q13796 1616 aa12.62□□□□□ -0.39
LMO3-220ENST00000539232 TSPOAP1O95153 1857 aa12.62□□□□□ -0.39
LMO3-220ENST00000539232 TOP2BQ02880 1626 aa12.62□□□□□ -0.39
LMO3-220ENST00000539232 NPM1P06748 294 aaKnown RBP eCLIP12.61□□□□□ -0.39
LMO3-220ENST00000539232 NUP160Q12769 1436 aa12.58□□□□□ -0.4
LMO3-220ENST00000539232 ILDR2Q71H61 639 aa12.58□□□□□ -0.4
LMO3-220ENST00000539232 GRIN2AQ12879 1464 aa12.58□□□□□ -0.4
LMO3-220ENST00000539232 BIVM-ERCC5R4GMW8 1640 aa12.56□□□□□ -0.4
LMO3-220ENST00000539232 ABCA5Q8WWZ7 1642 aa12.55□□□□□ -0.4
LMO3-220ENST00000539232 IGF1RP08069 1367 aa12.52□□□□□ -0.41
LMO3-220ENST00000539232 DISP3Q9P2K9 1392 aa12.51□□□□□ -0.41
LMO3-220ENST00000539232 PRG4Q92954 1404 aaPredicted RBP12.51□□□□□ -0.41
LMO3-220ENST00000539232 ADCY10Q96PN6 1610 aa12.48□□□□□ -0.41
LMO3-220ENST00000539232 FHAD1B1AJZ9 1412 aa12.48□□□□□ -0.41
LMO3-220ENST00000539232 ADAMTS12P58397 1594 aa12.46□□□□□ -0.42
LMO3-220ENST00000539232 RUSC2Q8N2Y8 1516 aa12.45□□□□□ -0.42
LMO3-220ENST00000539232 ERICH3Q5RHP9 1530 aa12.44□□□□□ -0.42
LMO3-220ENST00000539232 JPH4Q96JJ6 628 aa12.44□□□□□ -0.42
LMO3-220ENST00000539232 PPRC1Q5VV67 1664 aaKnown RBP12.44□□□□□ -0.42
LMO3-220ENST00000539232 KIF27Q86VH2 1401 aa12.44□□□□□ -0.42
LMO3-220ENST00000539232 COL17A1Q9UMD9 1497 aaPredicted RBP12.4□□□□□ -0.43
LMO3-220ENST00000539232 CARMIL1Q5VZK9 1371 aa12.39□□□□□ -0.43
LMO3-220ENST00000539232 GLI2P10070 1586 aa12.39□□□□□ -0.43
LMO3-220ENST00000539232 SPATA31D1Q6ZQQ2 1576 aa12.33□□□□□ -0.44
LMO3-220ENST00000539232 PLB1Q6P1J6 1458 aa12.33□□□□□ -0.44
LMO3-220ENST00000539232 CERKQ8TCT0 537 aa12.32□□□□□ -0.44
LMO3-220ENST00000539232 TEX14Q8IWB6 1497 aa12.32□□□□□ -0.44
LMO3-220ENST00000539232 ASXL2Q76L83 1435 aa12.29□□□□□ -0.44
LMO3-220ENST00000539232 CHIC1Q5VXU3 224 aa12.29□□□□□ -0.44
LMO3-220ENST00000539232 KIAA0586Q9BVV6 1533 aa12.28□□□□□ -0.44
LMO3-220ENST00000539232 MAP3K4Q9Y6R4 1608 aa12.28□□□□□ -0.44
LMO3-220ENST00000539232 PCF11O94913 1555 aaKnown RBP12.27□□□□□ -0.44
LMO3-220ENST00000539232 FAM9AQ8IZU1 332 aaPredicted RBP12.27□□□□□ -0.45
LMO3-220ENST00000539232 ABCC2Q92887 1545 aa12.27□□□□□ -0.45
LMO3-220ENST00000539232 TTBK1Q5TCY1 1321 aaPredicted RBP12.26□□□□□ -0.45
LMO3-220ENST00000539232 PTPRMP28827 1452 aa12.25□□□□□ -0.45
LMO3-220ENST00000539232 RAPGEF2Q9Y4G8 1499 aa12.24□□□□□ -0.45
LMO3-220ENST00000539232 PRXQ9BXM0 1461 aa12.22□□□□□ -0.45
LMO3-220ENST00000539232 CSRNP3Q8WYN3 585 aa12.22□□□□□ -0.45
LMO3-220ENST00000539232 KIF21BO75037 1637 aa12.22□□□□□ -0.45
LMO3-220ENST00000539232 EPRSP07814 1512 aaKnown RBP12.21□□□□□ -0.45
LMO3-220ENST00000539232 PTPRGP23470 1445 aa12.21□□□□□ -0.45
LMO3-220ENST00000539232 CUL7Q14999 1698 aa12.21□□□□□ -0.45
LMO3-220ENST00000539232 ADAMTSL3P82987 1691 aa12.19□□□□□ -0.46
LMO3-220ENST00000539232 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
LMO3-220ENST00000539232 DISP1Q96F81 1524 aa12.17□□□□□ -0.46
LMO3-220ENST00000539232 UHRF1BP1LA0JNW5 1464 aa12.16□□□□□ -0.46
LMO3-220ENST00000539232 TNIKQ9UKE5 1360 aa12.15□□□□□ -0.46
LMO3-220ENST00000539232 IQGAP2Q13576 1575 aa12.13□□□□□ -0.47
LMO3-220ENST00000539232 P3H3Q8IVL6 736 aa12.13□□□□□ -0.47
LMO3-220ENST00000539232 RANGAP1P46060 587 aaPredicted RBP12.12□□□□□ -0.47
LMO3-220ENST00000539232 UGGT2Q9NYU1 1516 aa12.11□□□□□ -0.47
LMO3-220ENST00000539232 HSPA2P54652 639 aa12.11□□□□□ -0.47
LMO3-220ENST00000539232 MAGI3Q5TCQ9 1506 aa12.11□□□□□ -0.47
LMO3-220ENST00000539232 KDM5BQ9UGL1 1544 aa12.11□□□□□ -0.47
LMO3-220ENST00000539232 CARMIL2Q6F5E8 1435 aa12.11□□□□□ -0.47
LMO3-220ENST00000539232 UACAQ9BZF9 1416 aa12.1□□□□□ -0.47
LMO3-220ENST00000539232 BCORL1Q5H9F3 1711 aa12.08□□□□□ -0.48
LMO3-220ENST00000539232 MADDQ8WXG6 1647 aa12.08□□□□□ -0.48
LMO3-220ENST00000539232 CFAP43Q8NDM7 1665 aa12.06□□□□□ -0.48
LMO3-220ENST00000539232 EEA1Q15075 1411 aa12.06□□□□□ -0.48
LMO3-220ENST00000539232 CD109Q6YHK3 1445 aa12.06□□□□□ -0.48
LMO3-220ENST00000539232 ARID3CA6NKF2 412 aa12.06□□□□□ -0.48
LMO3-220ENST00000539232 ZCCHC11Q5TAX3 1644 aaKnown RBP12.06□□□□□ -0.48
LMO3-220ENST00000539232 WDR7Q9Y4E6 1490 aa12.04□□□□□ -0.48
LMO3-220ENST00000539232 ARAP3Q8WWN8 1544 aa12.04□□□□□ -0.48
LMO3-220ENST00000539232 KIAA0556O60303 1618 aa12.04□□□□□ -0.48
LMO3-220ENST00000539232 RIMS1Q86UR5 1692 aaKnown RBP12.01□□□□□ -0.49
LMO3-220ENST00000539232 DMRT2Q9Y5R5 561 aa12□□□□□ -0.49
LMO3-220ENST00000539232 UBTFP17480 764 aaKnown RBP11.99□□□□□ -0.49
LMO3-220ENST00000539232 ARID4BQ4LE39 1312 aaPredicted RBP11.99□□□□□ -0.49
LMO3-220ENST00000539232 FHOD3Q2V2M9 1422 aa11.98□□□□□ -0.49
LMO3-220ENST00000539232 GOLGA3Q08378 1498 aa11.97□□□□□ -0.49
LMO3-220ENST00000539232 YEATS2Q9ULM3 1422 aa11.96□□□□□ -0.49
LMO3-220ENST00000539232 IQSEC2Q5JU85 1478 aa11.95□□□□□ -0.5
LMO3-220ENST00000539232 PHLDB1Q86UU1 1377 aa11.95□□□□□ -0.5
LMO3-220ENST00000539232 ABCA8O94911 1581 aa11.95□□□□□ -0.5
LMO3-220ENST00000539232 KCNH8Q96L42 1107 aa11.94□□□□□ -0.5
LMO3-220ENST00000539232 ATP10BO94823 1461 aa11.93□□□□□ -0.5
LMO3-220ENST00000539232 STRCQ7RTU9 1775 aa11.92□□□□□ -0.5
LMO3-220ENST00000539232 CTTNBP2Q8WZ74 1663 aa11.92□□□□□ -0.5
LMO3-220ENST00000539232 PLPPR3Q6T4P5 718 aa11.91□□□□□ -0.5
LMO3-220ENST00000539232 SAMD9Q5K651 1589 aa11.91□□□□□ -0.5
LMO3-220ENST00000539232 RAPGEF3O95398 923 aa11.9□□□□□ -0.5
LMO3-220ENST00000539232 PREX1Q8TCU6 1659 aa11.89□□□□□ -0.51
LMO3-220ENST00000539232 NUP153P49790 1475 aaKnown RBP11.89□□□□□ -0.51
LMO3-220ENST00000539232 ARHGAP35Q9NRY4 1499 aa11.89□□□□□ -0.51
LMO3-220ENST00000539232 POGZQ7Z3K3 1410 aa11.88□□□□□ -0.51
LMO3-220ENST00000539232 PTPRTO14522 1441 aa11.87□□□□□ -0.51
LMO3-220ENST00000539232 LTBP4Q8N2S1 1624 aa11.87□□□□□ -0.51
LMO3-220ENST00000539232 ARHGEF40Q8TER5 1519 aa11.86□□□□□ -0.51
LMO3-220ENST00000539232 LOC105371045A0A1W2PR82 267 aa11.86□□□□□ -0.51
LMO3-220ENST00000539232 MED1Q15648 1581 aaPredicted RBP11.86□□□□□ -0.51
LMO3-220ENST00000539232 FRMPD1Q5SYB0 1578 aa11.85□□□□□ -0.51
LMO3-220ENST00000539232 TTC37Q6PGP7 1564 aa11.85□□□□□ -0.51
LMO3-220ENST00000539232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.85□□□□□ -0.51
LMO3-220ENST00000539232 HNRNPUL2Q1KMD3 747 aaKnown RBP11.85□□□□□ -0.51
LMO3-220ENST00000539232 FANCAO15360 1455 aa11.84□□□□□ -0.51
LMO3-220ENST00000539232 NEO1Q92859 1461 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms