RNA–Protein interactions for RNA: ENST00000539047.1

VAMP1-207, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 565 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-207ENST00000539047 CHD1O14646 1710 aa24.67■■□□□ 1.54
VAMP1-207ENST00000539047 CEP162Q5TB80 1403 aa24.67■■□□□ 1.54
VAMP1-207ENST00000539047 CHMP7Q8WUX9 453 aaPredicted RBP24.65■■□□□ 1.54
VAMP1-207ENST00000539047 FBLN2P98095 1184 aa24.59■■□□□ 1.53
VAMP1-207ENST00000539047 CLIP1P30622 1438 aa24.59■■□□□ 1.53
VAMP1-207ENST00000539047 IQGAP2Q13576 1575 aa24.59■■□□□ 1.53
VAMP1-207ENST00000539047 CEP170Q5SW79 1584 aa24.53■■□□□ 1.52
VAMP1-207ENST00000539047 EFCAB5A4FU69 1503 aa24.52■■□□□ 1.52
VAMP1-207ENST00000539047 KIAA0586Q9BVV6 1533 aa24.51■■□□□ 1.51
VAMP1-207ENST00000539047 NUP160Q12769 1436 aa24.5■■□□□ 1.51
VAMP1-207ENST00000539047 RANGAP1P46060 587 aaPredicted RBP24.48■■□□□ 1.51
VAMP1-207ENST00000539047 SAMD9Q5K651 1589 aa24.42■■□□□ 1.5
VAMP1-207ENST00000539047 ARHGAP35Q9NRY4 1499 aa24.4■■□□□ 1.5
VAMP1-207ENST00000539047 UGGT2Q9NYU1 1516 aa24.4■■□□□ 1.5
VAMP1-207ENST00000539047 ARAP1Q96P48 1450 aa24.34■■□□□ 1.49
VAMP1-207ENST00000539047 VPS8Q8N3P4 1428 aa24.32■■□□□ 1.48
VAMP1-207ENST00000539047 RIMBP3CA6NJZ7 1639 aa24.32■■□□□ 1.48
VAMP1-207ENST00000539047 RIMBP3BA6NNM3 1639 aa24.32■■□□□ 1.48
VAMP1-207ENST00000539047 KIAA0556O60303 1618 aa24.32■■□□□ 1.48
VAMP1-207ENST00000539047 RIMBP3Q9UFD9 1639 aa24.32■■□□□ 1.48
VAMP1-207ENST00000539047 CLASP1Q7Z460 1538 aa24.3■■□□□ 1.48
VAMP1-207ENST00000539047 SHROOM2Q13796 1616 aa24.28■■□□□ 1.48
VAMP1-207ENST00000539047 CARMIL2Q6F5E8 1435 aa24.28■■□□□ 1.48
VAMP1-207ENST00000539047 FHOD3Q2V2M9 1422 aa24.26■■□□□ 1.47
VAMP1-207ENST00000539047 FMN1Q68DA7 1419 aa24.25■■□□□ 1.47
VAMP1-207ENST00000539047 ARHGEF11O15085 1522 aa24.25■■□□□ 1.47
VAMP1-207ENST00000539047 DISP1Q96F81 1524 aa24.22■■□□□ 1.47
VAMP1-207ENST00000539047 JPH4Q96JJ6 628 aa24.22■■□□□ 1.47
VAMP1-207ENST00000539047 P3H3Q8IVL6 736 aa24.21■■□□□ 1.47
VAMP1-207ENST00000539047 PCF11O94913 1555 aaKnown RBP24.17■■□□□ 1.46
VAMP1-207ENST00000539047 CYB5RLQ6IPT4 315 aa24.16■■□□□ 1.46
VAMP1-207ENST00000539047 PRG4Q92954 1404 aaPredicted RBP24.16■■□□□ 1.46
VAMP1-207ENST00000539047 FYCO1Q9BQS8 1478 aa24.15■■□□□ 1.46
VAMP1-207ENST00000539047 APLP2Q06481 763 aa24.14■■□□□ 1.45
VAMP1-207ENST00000539047 HECW1Q76N89 1606 aa24.11■■□□□ 1.45
VAMP1-207ENST00000539047 CASKIN1Q8WXD9 1431 aa24.1■■□□□ 1.45
VAMP1-207ENST00000539047 RAPGEF6Q8TEU7 1601 aa24.06■■□□□ 1.44
VAMP1-207ENST00000539047 CFAP43Q8NDM7 1665 aa24.06■■□□□ 1.44
VAMP1-207ENST00000539047 MAP3K1Q13233 1512 aa24.01■■□□□ 1.43
VAMP1-207ENST00000539047 ATP1B4Q9UN42 357 aaPredicted RBP24■■□□□ 1.43
VAMP1-207ENST00000539047 TTBK1Q5TCY1 1321 aaPredicted RBP24■■□□□ 1.43
VAMP1-207ENST00000539047 CCDC18Q5T9S5 1454 aa24■■□□□ 1.43
VAMP1-207ENST00000539047 TIAM1Q13009 1591 aa23.99■■□□□ 1.43
VAMP1-207ENST00000539047 ERCC6L2Q5T890 1561 aa23.99■■□□□ 1.43
VAMP1-207ENST00000539047 PTPRGP23470 1445 aa23.98■■□□□ 1.43
VAMP1-207ENST00000539047 LRRIQ1Q96JM4 1722 aa23.96■■□□□ 1.43
VAMP1-207ENST00000539047 ABCA8O94911 1581 aa23.94■■□□□ 1.42
VAMP1-207ENST00000539047 PLB1Q6P1J6 1458 aa23.9■■□□□ 1.42
VAMP1-207ENST00000539047 EPRSP07814 1512 aaKnown RBP23.88■■□□□ 1.41
VAMP1-207ENST00000539047 NUP153P49790 1475 aaKnown RBP23.87■■□□□ 1.41
VAMP1-207ENST00000539047 TRHP20396 242 aaPredicted RBP23.86■■□□□ 1.41
VAMP1-207ENST00000539047 UACAQ9BZF9 1416 aa23.85■■□□□ 1.41
VAMP1-207ENST00000539047 ABCC2Q92887 1545 aa23.85■■□□□ 1.41
VAMP1-207ENST00000539047 EHBP1L1Q8N3D4 1523 aa23.83■■□□□ 1.41
VAMP1-207ENST00000539047 LRRC9Q6ZRR7 1453 aa23.82■■□□□ 1.4
VAMP1-207ENST00000539047 CDK13Q14004 1512 aaKnown RBP23.82■■□□□ 1.4
VAMP1-207ENST00000539047 PPARGC1BQ86YN6 1023 aaKnown RBP23.8■■□□□ 1.4
VAMP1-207ENST00000539047 UHRF1BP1LA0JNW5 1464 aa23.8■■□□□ 1.4
VAMP1-207ENST00000539047 MTUS2Q5JR59 1369 aa23.79■■□□□ 1.4
VAMP1-207ENST00000539047 SUPT6HQ7KZ85 1726 aaKnown RBP23.78■■□□□ 1.4
VAMP1-207ENST00000539047 CDK11AQ9UQ88 783 aaPredicted RBP23.77■■□□□ 1.4
VAMP1-207ENST00000539047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.76■■□□□ 1.39
VAMP1-207ENST00000539047 HNRNPUL2Q1KMD3 747 aaKnown RBP23.76■■□□□ 1.39
VAMP1-207ENST00000539047 ADCY10Q96PN6 1610 aa23.73■■□□□ 1.39
VAMP1-207ENST00000539047 ARID3CA6NKF2 412 aa23.72■■□□□ 1.39
VAMP1-207ENST00000539047 ZCCHC11Q5TAX3 1644 aaKnown RBP23.72■■□□□ 1.39
VAMP1-207ENST00000539047 KANK4Q5T7N3 995 aaPredicted RBP23.71■■□□□ 1.39
VAMP1-207ENST00000539047 ATP10BO94823 1461 aa23.69■■□□□ 1.38
VAMP1-207ENST00000539047 TRIM26Q12899 539 aaPredicted RBP23.67■■□□□ 1.38
VAMP1-207ENST00000539047 MAGI3Q5TCQ9 1506 aa23.66■■□□□ 1.38
VAMP1-207ENST00000539047 KDM5BQ9UGL1 1544 aa23.66■■□□□ 1.38
VAMP1-207ENST00000539047 KIF14Q15058 1648 aa23.66■■□□□ 1.38
VAMP1-207ENST00000539047 TROQ12816 1431 aaPredicted RBP23.65■■□□□ 1.38
VAMP1-207ENST00000539047 PLEKHD1A6NEE1 506 aa23.62■■□□□ 1.37
VAMP1-207ENST00000539047 NCOA2Q15596 1464 aa23.61■■□□□ 1.37
VAMP1-207ENST00000539047 ITSN2Q9NZM3 1697 aa23.6■■□□□ 1.37
VAMP1-207ENST00000539047 NPM1P06748 294 aaKnown RBP eCLIP23.58■■□□□ 1.37
VAMP1-207ENST00000539047 MYOM3Q5VTT5 1437 aa23.51■■□□□ 1.35
VAMP1-207ENST00000539047 PHLDB1Q86UU1 1377 aa23.5■■□□□ 1.35
VAMP1-207ENST00000539047 RRBP1Q9P2E9 1410 aaKnown RBP23.5■■□□□ 1.35
VAMP1-207ENST00000539047 CCNB3Q8WWL7 1395 aa23.49■■□□□ 1.35
VAMP1-207ENST00000539047 WDR7Q9Y4E6 1490 aa23.49■■□□□ 1.35
VAMP1-207ENST00000539047 PCGF6Q9BYE7 350 aa23.47■■□□□ 1.35
VAMP1-207ENST00000539047 MYO5CQ9NQX4 1742 aa23.46■■□□□ 1.35
VAMP1-207ENST00000539047 CDC42BPAQ5VT25 1732 aa23.45■■□□□ 1.34
VAMP1-207ENST00000539047 FGD6Q6ZV73 1430 aa23.45■■□□□ 1.34
VAMP1-207ENST00000539047 PTPN23Q9H3S7 1636 aa23.44■■□□□ 1.34
VAMP1-207ENST00000539047 ASXL2Q76L83 1435 aa23.43■■□□□ 1.34
VAMP1-207ENST00000539047 MIA2Q96PC5 1412 aa23.42■■□□□ 1.34
VAMP1-207ENST00000539047 PREX2Q70Z35 1606 aa23.42■■□□□ 1.34
VAMP1-207ENST00000539047 MAPKBP1O60336 1514 aa23.42■■□□□ 1.34
VAMP1-207ENST00000539047 ABCC10Q5T3U5 1492 aa23.41■■□□□ 1.34
VAMP1-207ENST00000539047 TTC37Q6PGP7 1564 aa23.4■■□□□ 1.34
VAMP1-207ENST00000539047 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.39■■□□□ 1.34
VAMP1-207ENST00000539047 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.37■■□□□ 1.33
VAMP1-207ENST00000539047 ABCA9Q8IUA7 1624 aa23.37■■□□□ 1.33
VAMP1-207ENST00000539047 GPATCH8Q9UKJ3 1502 aaKnown RBP23.35■■□□□ 1.33
VAMP1-207ENST00000539047 FAM50AQ14320 339 aaKnown RBP23.35■■□□□ 1.33
VAMP1-207ENST00000539047 KCNH8Q96L42 1107 aa23.35■■□□□ 1.33
VAMP1-207ENST00000539047 TCOF1Q13428 1488 aaKnown RBP23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms