RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 SIN3AQ96ST3 1273 aa12.67□□□□□ -0.38
UBE3B-208ENST00000538070 DHX57Q6P158 1386 aaKnown RBP12.65□□□□□ -0.38
UBE3B-208ENST00000538070 FBLN2P98095 1184 aa12.64□□□□□ -0.39
UBE3B-208ENST00000538070 CHIC2Q9UKJ5 165 aa12.63□□□□□ -0.39
UBE3B-208ENST00000538070 POLA1P09884 1462 aaPredicted RBP12.61□□□□□ -0.39
UBE3B-208ENST00000538070 RAB3GAP2Q9H2M9 1393 aa12.6□□□□□ -0.39
UBE3B-208ENST00000538070 PHLDB1Q86UU1 1377 aa12.6□□□□□ -0.39
UBE3B-208ENST00000538070 TOPBP1Q92547 1522 aa12.6□□□□□ -0.39
UBE3B-208ENST00000538070 MTUS2Q5JR59 1369 aa12.58□□□□□ -0.4
UBE3B-208ENST00000538070 RRP7BPQ9NSQ0 103 aa12.55□□□□□ -0.4
UBE3B-208ENST00000538070 TRIM52Q96A61 297 aa12.55□□□□□ -0.4
UBE3B-208ENST00000538070 FHAD1B1AJZ9 1412 aa12.54□□□□□ -0.4
UBE3B-208ENST00000538070 DDX10Q13206 875 aaKnown RBP12.54□□□□□ -0.4
UBE3B-208ENST00000538070 DNAJC5Q9H3Z4 198 aa12.53□□□□□ -0.4
UBE3B-208ENST00000538070 RRBP1Q9P2E9 1410 aaKnown RBP12.53□□□□□ -0.4
UBE3B-208ENST00000538070 PDS5BQ9NTI5 1447 aa12.53□□□□□ -0.4
UBE3B-208ENST00000538070 LRRC9Q6ZRR7 1453 aa12.52□□□□□ -0.41
UBE3B-208ENST00000538070 URB2Q14146 1524 aaKnown RBP12.52□□□□□ -0.41
UBE3B-208ENST00000538070 AQRO60306 1485 aaKnown RBP eCLIP12.51□□□□□ -0.41
UBE3B-208ENST00000538070 DNMBPQ6XZF7 1577 aa12.5□□□□□ -0.41
UBE3B-208ENST00000538070 SETD5Q9C0A6 1442 aa12.5□□□□□ -0.41
UBE3B-208ENST00000538070 GAPVD1Q14C86 1478 aa12.5□□□□□ -0.41
UBE3B-208ENST00000538070 KCNH8Q96L42 1107 aa12.49□□□□□ -0.41
UBE3B-208ENST00000538070 CNGB1Q14028 1251 aaPredicted RBP12.48□□□□□ -0.41
UBE3B-208ENST00000538070 ABCA10Q8WWZ4 1543 aa12.48□□□□□ -0.41
UBE3B-208ENST00000538070 TIAM1Q13009 1591 aa12.48□□□□□ -0.41
UBE3B-208ENST00000538070 CLSPNQ9HAW4 1339 aa12.47□□□□□ -0.41
UBE3B-208ENST00000538070 ZNF777Q9ULD5 760 aaPredicted RBP12.46□□□□□ -0.41
UBE3B-208ENST00000538070 PCF11O94913 1555 aaKnown RBP12.46□□□□□ -0.41
UBE3B-208ENST00000538070 FOXD1Q16676 465 aa12.44□□□□□ -0.42
UBE3B-208ENST00000538070 CHMP7Q8WUX9 453 aaPredicted RBP12.42□□□□□ -0.42
UBE3B-208ENST00000538070 FMN1Q68DA7 1419 aa12.42□□□□□ -0.42
UBE3B-208ENST00000538070 PRDM2Q13029 1718 aa12.42□□□□□ -0.42
UBE3B-208ENST00000538070 TONSLQ96HA7 1378 aa12.41□□□□□ -0.42
UBE3B-208ENST00000538070 CASKIN1Q8WXD9 1431 aa12.4□□□□□ -0.43
UBE3B-208ENST00000538070 BCANQ96GW7 911 aa12.38□□□□□ -0.43
UBE3B-208ENST00000538070 POLR3GLQ9BT43 218 aa12.38□□□□□ -0.43
UBE3B-208ENST00000538070 LAMC3Q9Y6N6 1575 aa12.37□□□□□ -0.43
UBE3B-208ENST00000538070 ERCC6Q03468 1493 aa12.37□□□□□ -0.43
UBE3B-208ENST00000538070 FGD6Q6ZV73 1430 aa12.36□□□□□ -0.43
UBE3B-208ENST00000538070 ZNF326Q5BKZ1 582 aaKnown RBP12.36□□□□□ -0.43
UBE3B-208ENST00000538070 FYCO1Q9BQS8 1478 aa12.35□□□□□ -0.43
UBE3B-208ENST00000538070 ZNF644Q9H582 1327 aaPredicted RBP12.35□□□□□ -0.43
UBE3B-208ENST00000538070 ZNF608Q9ULD9 1512 aaPredicted RBP12.34□□□□□ -0.43
UBE3B-208ENST00000538070 KIF21AQ7Z4S6 1674 aa12.34□□□□□ -0.43
UBE3B-208ENST00000538070 PPP1R15AO75807 674 aaPredicted RBP12.34□□□□□ -0.43
UBE3B-208ENST00000538070 NCOA2Q15596 1464 aa12.33□□□□□ -0.44
UBE3B-208ENST00000538070 PTPRKQ15262 1439 aa12.32□□□□□ -0.44
UBE3B-208ENST00000538070 MAPKBP1O60336 1514 aa12.32□□□□□ -0.44
UBE3B-208ENST00000538070 ANP32CO43423 234 aa12.31□□□□□ -0.44
UBE3B-208ENST00000538070 WDR97A6NE52 1622 aa12.3□□□□□ -0.44
UBE3B-208ENST00000538070 EFCAB5A4FU69 1503 aa12.3□□□□□ -0.44
UBE3B-208ENST00000538070 CUL7Q14999 1698 aa12.3□□□□□ -0.44
UBE3B-208ENST00000538070 CCDC18Q5T9S5 1454 aa12.3□□□□□ -0.44
UBE3B-208ENST00000538070 CDK13Q14004 1512 aaKnown RBP12.29□□□□□ -0.44
UBE3B-208ENST00000538070 MYOM3Q5VTT5 1437 aa12.28□□□□□ -0.44
UBE3B-208ENST00000538070 MAP3K1Q13233 1512 aa12.28□□□□□ -0.44
UBE3B-208ENST00000538070 CDK11AQ9UQ88 783 aaPredicted RBP12.28□□□□□ -0.44
UBE3B-208ENST00000538070 SLC4A1APQ9BWU0 796 aaKnown RBP12.27□□□□□ -0.45
UBE3B-208ENST00000538070 CFDP1Q9UEE9 299 aaPredicted RBP12.27□□□□□ -0.45
UBE3B-208ENST00000538070 SNAPC4Q5SXM2 1469 aa12.27□□□□□ -0.45
UBE3B-208ENST00000538070 MRC2Q9UBG0 1479 aa12.26□□□□□ -0.45
UBE3B-208ENST00000538070 CTTNBP2Q8WZ74 1663 aa12.25□□□□□ -0.45
UBE3B-208ENST00000538070 SENP3-EIF4A1A0A087X0R7 540 aa12.25□□□□□ -0.45
UBE3B-208ENST00000538070 MPHOSPH9Q99550 1183 aa12.25□□□□□ -0.45
UBE3B-208ENST00000538070 GRIN2BQ13224 1484 aa12.24□□□□□ -0.45
UBE3B-208ENST00000538070 PELP1Q8IZL8 1130 aaKnown RBP12.24□□□□□ -0.45
UBE3B-208ENST00000538070 JPH4Q96JJ6 628 aa12.23□□□□□ -0.45
UBE3B-208ENST00000538070 ABCA5Q8WWZ7 1642 aa12.23□□□□□ -0.45
UBE3B-208ENST00000538070 CFAP43Q8NDM7 1665 aa12.22□□□□□ -0.45
UBE3B-208ENST00000538070 NAIPQ13075 1403 aa12.22□□□□□ -0.45
UBE3B-208ENST00000538070 L3MBTL2Q969R5 705 aa12.22□□□□□ -0.45
UBE3B-208ENST00000538070 HSPA5P11021 654 aaKnown RBP12.21□□□□□ -0.46
UBE3B-208ENST00000538070 FKBP8Q14318 412 aa12.21□□□□□ -0.46
UBE3B-208ENST00000538070 SUPT16HQ9Y5B9 1047 aaKnown RBP12.2□□□□□ -0.46
UBE3B-208ENST00000538070 EPRSP07814 1512 aaKnown RBP12.2□□□□□ -0.46
UBE3B-208ENST00000538070 MAGI3Q5TCQ9 1506 aa12.19□□□□□ -0.46
UBE3B-208ENST00000538070 KDM2AQ9Y2K7 1162 aa12.19□□□□□ -0.46
UBE3B-208ENST00000538070 IQGAP2Q13576 1575 aa12.19□□□□□ -0.46
UBE3B-208ENST00000538070 PLEKHD1A6NEE1 506 aa12.19□□□□□ -0.46
UBE3B-208ENST00000538070 HFM1A2PYH4 1435 aa12.19□□□□□ -0.46
UBE3B-208ENST00000538070 TARBP1Q13395 1621 aaKnown RBP12.18□□□□□ -0.46
UBE3B-208ENST00000538070 UACAQ9BZF9 1416 aa12.18□□□□□ -0.46
UBE3B-208ENST00000538070 PRG4Q92954 1404 aaPredicted RBP12.18□□□□□ -0.46
UBE3B-208ENST00000538070 EIF4G2P78344 907 aaKnown RBP eCLIP12.17□□□□□ -0.46
UBE3B-208ENST00000538070 IRX6P78412 446 aaPredicted RBP12.17□□□□□ -0.46
UBE3B-208ENST00000538070 HNRNPUQ00839 825 aaKnown RBP eCLIP12.17□□□□□ -0.46
UBE3B-208ENST00000538070 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.17□□□□□ -0.46
UBE3B-208ENST00000538070 TIMELESSQ9UNS1 1208 aa12.17□□□□□ -0.46
UBE3B-208ENST00000538070 THOC2Q8NI27 1593 aaKnown RBP12.16□□□□□ -0.46
UBE3B-208ENST00000538070 NEFLP07196 543 aa12.16□□□□□ -0.46
UBE3B-208ENST00000538070 IFT140Q96RY7 1462 aa12.15□□□□□ -0.46
UBE3B-208ENST00000538070 FAM9BQ8IZU0 186 aa12.15□□□□□ -0.46
UBE3B-208ENST00000538070 SUPT6HQ7KZ85 1726 aaKnown RBP12.15□□□□□ -0.46
UBE3B-208ENST00000538070 EHBP1L1Q8N3D4 1523 aa12.15□□□□□ -0.46
UBE3B-208ENST00000538070 PTPN23Q9H3S7 1636 aa12.15□□□□□ -0.46
UBE3B-208ENST00000538070 HNRNPMP52272 730 aaKnown RBP eCLIP12.15□□□□□ -0.47
UBE3B-208ENST00000538070 PLB1Q6P1J6 1458 aa12.15□□□□□ -0.47
UBE3B-208ENST00000538070 SAMD9Q5K651 1589 aa12.14□□□□□ -0.47
UBE3B-208ENST00000538070 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms