RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 EIF5BO60841 1220 aaKnown RBP15.34■□□□□ 0.05
CLSTN3-207ENST00000537408 CYB5RLQ6IPT4 315 aa15.34■□□□□ 0.05
CLSTN3-207ENST00000537408 SALL2Q9Y467 1007 aaPredicted RBP15.34■□□□□ 0.05
CLSTN3-207ENST00000537408 MSH5O43196 834 aa15.31■□□□□ 0.04
CLSTN3-207ENST00000537408 CDK11AQ9UQ88 783 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-207ENST00000537408 CCDC136Q96JN2 1154 aa15.27■□□□□ 0.04
CLSTN3-207ENST00000537408 TOPBP1Q92547 1522 aa15.27■□□□□ 0.04
CLSTN3-207ENST00000537408 FGD5Q6ZNL6 1462 aa15.25■□□□□ 0.03
CLSTN3-207ENST00000537408 SLC24A1O60721 1099 aa15.25■□□□□ 0.03
CLSTN3-207ENST00000537408 RTL5Q5HYW3 569 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-207ENST00000537408 AQRO60306 1485 aaKnown RBP eCLIP15.24■□□□□ 0.036e-9■■■■■ 30.6
CLSTN3-207ENST00000537408 P3H3Q8IVL6 736 aa15.23■□□□□ 0.03
CLSTN3-207ENST00000537408 GAPVD1Q14C86 1478 aa15.22■□□□□ 0.03
CLSTN3-207ENST00000537408 DNAJC5Q9H3Z4 198 aa15.21■□□□□ 0.03
CLSTN3-207ENST00000537408 DNMBPQ6XZF7 1577 aa15.21■□□□□ 0.03
CLSTN3-207ENST00000537408 GRIN2BQ13224 1484 aa15.21■□□□□ 0.02
CLSTN3-207ENST00000537408 RAD54L2Q9Y4B4 1467 aa15.2■□□□□ 0.02
CLSTN3-207ENST00000537408 CARMIL1Q5VZK9 1371 aa15.19■□□□□ 0.02
CLSTN3-207ENST00000537408 CARMIL2Q6F5E8 1435 aa15.19■□□□□ 0.02
CLSTN3-207ENST00000537408 ITGAEP38570 1179 aa15.18■□□□□ 0.02
CLSTN3-207ENST00000537408 ARID3CA6NKF2 412 aa15.16■□□□□ 0.02
CLSTN3-207ENST00000537408 JPH4Q96JJ6 628 aa15.15■□□□□ 0.02
CLSTN3-207ENST00000537408 URB2Q14146 1524 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-207ENST00000537408 POLA1P09884 1462 aaPredicted RBP15.15■□□□□ 0.02
CLSTN3-207ENST00000537408 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.15■□□□□ 0.02
CLSTN3-207ENST00000537408 PKNOX2Q96KN3 472 aa15.14■□□□□ 0.02
CLSTN3-207ENST00000537408 NBR1Q14596 966 aa15.13■□□□□ 0.01
CLSTN3-207ENST00000537408 EEA1Q15075 1411 aa15.12■□□□□ 0.01
CLSTN3-207ENST00000537408 WDR62O43379 1518 aa15.09■□□□□ 0.01
CLSTN3-207ENST00000537408 KIF21AQ7Z4S6 1674 aa15.09■□□□□ 0.01
CLSTN3-207ENST00000537408 NOP58Q9Y2X3 529 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-207ENST00000537408 RTN4Q9NQC3 1192 aaKnown RBP15.07■□□□□ 0
CLSTN3-207ENST00000537408 GLIPR1L2Q4G1C9 344 aa15.07■□□□□ 0
CLSTN3-207ENST00000537408 FHAD1B1AJZ9 1412 aa15.06■□□□□ 0
CLSTN3-207ENST00000537408 KCNH8Q96L42 1107 aa15.06■□□□□ 0
CLSTN3-207ENST00000537408 SNAPC4Q5SXM2 1469 aa15.05■□□□□ -0
CLSTN3-207ENST00000537408 PLEKHD1A6NEE1 506 aa15.03■□□□□ -0
CLSTN3-207ENST00000537408 ESF1Q9H501 851 aaKnown RBP15.02■□□□□ -0
CLSTN3-207ENST00000537408 MAGI1Q96QZ7 1491 aaPredicted RBP15.01□□□□□ -0.01
CLSTN3-207ENST00000537408 DAXXQ9UER7 740 aaPredicted RBP15.01□□□□□ -0.01
CLSTN3-207ENST00000537408 ZNF608Q9ULD9 1512 aaPredicted RBP15.01□□□□□ -0.01
CLSTN3-207ENST00000537408 IL27Q8NEV9 243 aa15□□□□□ -0.01
CLSTN3-207ENST00000537408 CUX1P39880 1505 aa14.99□□□□□ -0.01
CLSTN3-207ENST00000537408 SYNJ2O15056 1496 aa14.97□□□□□ -0.01
CLSTN3-207ENST00000537408 AEBP2Q6ZN18 517 aaPredicted RBP14.97□□□□□ -0.01
CLSTN3-207ENST00000537408 PTPRGP23470 1445 aa14.97□□□□□ -0.01
CLSTN3-207ENST00000537408 SYNJ1O43426 1573 aa14.94□□□□□ -0.02
CLSTN3-207ENST00000537408 ABCA10Q8WWZ4 1543 aa14.94□□□□□ -0.02
CLSTN3-207ENST00000537408 RAPGEF2Q9Y4G8 1499 aa14.94□□□□□ -0.02
CLSTN3-207ENST00000537408 ANP32AP39687 249 aaKnown RBP14.93□□□□□ -0.02
CLSTN3-207ENST00000537408 THOC2Q8NI27 1593 aaKnown RBP14.92□□□□□ -0.02
CLSTN3-207ENST00000537408 PODXL2Q9NZ53 605 aa14.91□□□□□ -0.02
CLSTN3-207ENST00000537408 IGF1RP08069 1367 aa14.9□□□□□ -0.02
CLSTN3-207ENST00000537408 FAM69CQ0P6D2 419 aa14.9□□□□□ -0.02
CLSTN3-207ENST00000537408 GOLGA3Q08378 1498 aa14.89□□□□□ -0.03
CLSTN3-207ENST00000537408 PRG4Q92954 1404 aaPredicted RBP14.89□□□□□ -0.03
CLSTN3-207ENST00000537408 ZNF777Q9ULD5 760 aaPredicted RBP14.89□□□□□ -0.03
CLSTN3-207ENST00000537408 CEP162Q5TB80 1403 aa14.88□□□□□ -0.03
CLSTN3-207ENST00000537408 ZBTB47Q9UFB7 747 aaPredicted RBP14.88□□□□□ -0.03
CLSTN3-207ENST00000537408 TOP2BQ02880 1626 aa14.87□□□□□ -0.03
CLSTN3-207ENST00000537408 ARID4BQ4LE39 1312 aaPredicted RBP14.87□□□□□ -0.03
CLSTN3-207ENST00000537408 TRIM52Q96A61 297 aa14.86□□□□□ -0.03
CLSTN3-207ENST00000537408 RSPH6AQ9H0K4 717 aa14.85□□□□□ -0.03
CLSTN3-207ENST00000537408 PPP4R2Q9NY27 417 aa14.84□□□□□ -0.03
CLSTN3-207ENST00000537408 GRIN2AQ12879 1464 aa14.82□□□□□ -0.04
CLSTN3-207ENST00000537408 TNIKQ9UKE5 1360 aa14.82□□□□□ -0.04
CLSTN3-207ENST00000537408 CCER2I3L3R5 266 aa14.81□□□□□ -0.04
CLSTN3-207ENST00000537408 ANP32CO43423 234 aa14.81□□□□□ -0.04
CLSTN3-207ENST00000537408 PLPPR3Q6T4P5 718 aa14.8□□□□□ -0.04
CLSTN3-207ENST00000537408 EIF4G3O43432 1585 aaKnown RBP14.79□□□□□ -0.04
CLSTN3-207ENST00000537408 FAM50AQ14320 339 aaKnown RBP14.79□□□□□ -0.04
CLSTN3-207ENST00000537408 ERICH3Q5RHP9 1530 aa14.79□□□□□ -0.04
CLSTN3-207ENST00000537408 IPO9Q96P70 1041 aaKnown RBP14.79□□□□□ -0.04
CLSTN3-207ENST00000537408 PRDM2Q13029 1718 aa14.79□□□□□ -0.04
CLSTN3-207ENST00000537408 PAK3O75914 559 aaPredicted RBP14.78□□□□□ -0.04
CLSTN3-207ENST00000537408 USP35Q9P2H5 1018 aa14.78□□□□□ -0.04
CLSTN3-207ENST00000537408 C11orf95C9JLR9 678 aaPredicted RBP14.77□□□□□ -0.04
CLSTN3-207ENST00000537408 MTUS2Q5JR59 1369 aa14.76□□□□□ -0.05
CLSTN3-207ENST00000537408 KIAA0586Q9BVV6 1533 aa14.76□□□□□ -0.05
CLSTN3-207ENST00000537408 IRX6P78412 446 aaPredicted RBP14.76□□□□□ -0.05
CLSTN3-207ENST00000537408 PLEKHG5O94827 1062 aa14.75□□□□□ -0.05
CLSTN3-207ENST00000537408 NEFMP07197 916 aa14.75□□□□□ -0.05
CLSTN3-207ENST00000537408 DDX10Q13206 875 aaKnown RBP14.74□□□□□ -0.05
CLSTN3-207ENST00000537408 WDR97A6NE52 1622 aa14.74□□□□□ -0.05
CLSTN3-207ENST00000537408 CLIP1P30622 1438 aa14.72□□□□□ -0.05
CLSTN3-207ENST00000537408 VSIG10Q8N0Z9 540 aa14.71□□□□□ -0.05
CLSTN3-207ENST00000537408 TSPY4P0CV99 314 aa14.7□□□□□ -0.06
CLSTN3-207ENST00000537408 TSPY10P0CW01 314 aa14.7□□□□□ -0.06
CLSTN3-207ENST00000537408 DHX57Q6P158 1386 aaKnown RBP14.7□□□□□ -0.06
CLSTN3-207ENST00000537408 PPM1GO15355 546 aaPredicted RBP14.69□□□□□ -0.06
CLSTN3-207ENST00000537408 WASHC2AQ641Q2 1341 aa14.69□□□□□ -0.06
CLSTN3-207ENST00000537408 FMN1Q68DA7 1419 aa14.68□□□□□ -0.06
CLSTN3-207ENST00000537408 EFCAB2Q5VUJ9 269 aa14.68□□□□□ -0.06
CLSTN3-207ENST00000537408 TIMELESSQ9UNS1 1208 aa14.67□□□□□ -0.06
CLSTN3-207ENST00000537408 HNRNPUQ00839 825 aaKnown RBP eCLIP14.66□□□□□ -0.06
CLSTN3-207ENST00000537408 ZMYND15Q9H091 742 aa14.66□□□□□ -0.06
CLSTN3-207ENST00000537408 BIVM-ERCC5R4GMW8 1640 aa14.65□□□□□ -0.06
CLSTN3-207ENST00000537408 WASHC2CQ9Y4E1 1318 aa14.65□□□□□ -0.06
CLSTN3-207ENST00000537408 CFDP1Q9UEE9 299 aaPredicted RBP14.65□□□□□ -0.06
CLSTN3-207ENST00000537408 CUL7Q14999 1698 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms