RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 ABCA10Q8WWZ4 1543 aa16.78■□□□□ 0.28
SYNE1-234ENST00000536990 FHAD1B1AJZ9 1412 aa16.78■□□□□ 0.28
SYNE1-234ENST00000536990 POLA1P09884 1462 aaPredicted RBP16.77■□□□□ 0.28
SYNE1-234ENST00000536990 NESP48681 1621 aa16.77■□□□□ 0.28
SYNE1-234ENST00000536990 LRRC9Q6ZRR7 1453 aa16.75■□□□□ 0.27
SYNE1-234ENST00000536990 MYT1Q01538 1121 aa16.75■□□□□ 0.27
SYNE1-234ENST00000536990 P3H3Q8IVL6 736 aa16.75■□□□□ 0.27
SYNE1-234ENST00000536990 MAPKBP1O60336 1514 aa16.73■□□□□ 0.27
SYNE1-234ENST00000536990 RAB3GAP2Q9H2M9 1393 aa16.72■□□□□ 0.27
SYNE1-234ENST00000536990 CUL7Q14999 1698 aa16.71■□□□□ 0.26
SYNE1-234ENST00000536990 ATP1B4Q9UN42 357 aaPredicted RBP16.7■□□□□ 0.26
SYNE1-234ENST00000536990 PCF11O94913 1555 aaKnown RBP16.7■□□□□ 0.26
SYNE1-234ENST00000536990 CFAP43Q8NDM7 1665 aa16.69■□□□□ 0.26
SYNE1-234ENST00000536990 PHLDB1Q86UU1 1377 aa16.69■□□□□ 0.26
SYNE1-234ENST00000536990 LAMC3Q9Y6N6 1575 aa16.69■□□□□ 0.26
SYNE1-234ENST00000536990 FHOD3Q2V2M9 1422 aa16.68■□□□□ 0.26
SYNE1-234ENST00000536990 EFCAB5A4FU69 1503 aa16.68■□□□□ 0.26
SYNE1-234ENST00000536990 SETD5Q9C0A6 1442 aa16.66■□□□□ 0.26
SYNE1-234ENST00000536990 CTTNBP2Q8WZ74 1663 aa16.65■□□□□ 0.26
SYNE1-234ENST00000536990 FAM50AQ14320 339 aaKnown RBP16.65■□□□□ 0.26
SYNE1-234ENST00000536990 SUPT16HQ9Y5B9 1047 aaKnown RBP16.65■□□□□ 0.26
SYNE1-234ENST00000536990 URB2Q14146 1524 aaKnown RBP16.65■□□□□ 0.26
SYNE1-234ENST00000536990 FYCO1Q9BQS8 1478 aa16.65■□□□□ 0.26
SYNE1-234ENST00000536990 CASKIN1Q8WXD9 1431 aa16.63■□□□□ 0.25
SYNE1-234ENST00000536990 WDR97A6NE52 1622 aa16.62■□□□□ 0.25
SYNE1-234ENST00000536990 AQRO60306 1485 aaKnown RBP eCLIP16.62■□□□□ 0.25
SYNE1-234ENST00000536990 TDRD9Q8NDG6 1382 aaKnown RBP16.59■□□□□ 0.25
SYNE1-234ENST00000536990 FMN1Q68DA7 1419 aa16.59■□□□□ 0.25
SYNE1-234ENST00000536990 PDS5BQ9NTI5 1447 aa16.59■□□□□ 0.25
SYNE1-234ENST00000536990 GAPVD1Q14C86 1478 aa16.57■□□□□ 0.24
SYNE1-234ENST00000536990 ABCA5Q8WWZ7 1642 aa16.57■□□□□ 0.24
SYNE1-234ENST00000536990 KCNH8Q96L42 1107 aa16.55■□□□□ 0.24
SYNE1-234ENST00000536990 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.54■□□□□ 0.24
SYNE1-234ENST00000536990 SIN3AQ96ST3 1273 aa16.53■□□□□ 0.24
SYNE1-234ENST00000536990 SNAPC4Q5SXM2 1469 aa16.52■□□□□ 0.23
SYNE1-234ENST00000536990 DNAJC5BQ9UF47 199 aa16.51■□□□□ 0.23
SYNE1-234ENST00000536990 SAMD9Q5K651 1589 aa16.5■□□□□ 0.23
SYNE1-234ENST00000536990 TIMELESSQ9UNS1 1208 aa16.5■□□□□ 0.23
SYNE1-234ENST00000536990 MTUS2Q5JR59 1369 aa16.5■□□□□ 0.23
SYNE1-234ENST00000536990 KIF21AQ7Z4S6 1674 aa16.5■□□□□ 0.23
SYNE1-234ENST00000536990 FGD6Q6ZV73 1430 aa16.48■□□□□ 0.23
SYNE1-234ENST00000536990 PPP1R15AO75807 674 aaPredicted RBP16.46■□□□□ 0.23
SYNE1-234ENST00000536990 DDX10Q13206 875 aaKnown RBP16.46■□□□□ 0.23
SYNE1-234ENST00000536990 TARBP1Q13395 1621 aaKnown RBP16.44■□□□□ 0.22
SYNE1-234ENST00000536990 GRIN2BQ13224 1484 aa16.44■□□□□ 0.22
SYNE1-234ENST00000536990 LRRIQ1Q96JM4 1722 aa16.43■□□□□ 0.22
SYNE1-234ENST00000536990 TSHZ2Q9NRE2 1034 aa16.43■□□□□ 0.22
SYNE1-234ENST00000536990 THOC2Q8NI27 1593 aaKnown RBP16.42■□□□□ 0.22
SYNE1-234ENST00000536990 NCOA2Q15596 1464 aa16.41■□□□□ 0.22
SYNE1-234ENST00000536990 SUPT6HQ7KZ85 1726 aaKnown RBP16.39■□□□□ 0.21
SYNE1-234ENST00000536990 MYOM3Q5VTT5 1437 aa16.39■□□□□ 0.21
SYNE1-234ENST00000536990 EHBP1L1Q8N3D4 1523 aa16.38■□□□□ 0.21
SYNE1-234ENST00000536990 CCDC18Q5T9S5 1454 aa16.37■□□□□ 0.21
SYNE1-234ENST00000536990 PBRM1Q86U86 1689 aa16.37■□□□□ 0.21
SYNE1-234ENST00000536990 HFM1A2PYH4 1435 aa16.37■□□□□ 0.21
SYNE1-234ENST00000536990 PTPRKQ15262 1439 aa16.37■□□□□ 0.21
SYNE1-234ENST00000536990 CCER2I3L3R5 266 aa16.35■□□□□ 0.21
SYNE1-234ENST00000536990 HIRIP3Q9BW71 556 aaPredicted RBP16.34■□□□□ 0.21
SYNE1-234ENST00000536990 PTPN23Q9H3S7 1636 aa16.34■□□□□ 0.21
SYNE1-234ENST00000536990 UACAQ9BZF9 1416 aa16.33■□□□□ 0.21
SYNE1-234ENST00000536990 IQGAP2Q13576 1575 aa16.33■□□□□ 0.2
SYNE1-234ENST00000536990 UGGT2Q9NYU1 1516 aa16.33■□□□□ 0.2
SYNE1-234ENST00000536990 MRC2Q9UBG0 1479 aa16.32■□□□□ 0.2
SYNE1-234ENST00000536990 NAIPQ13075 1403 aa16.32■□□□□ 0.2
SYNE1-234ENST00000536990 ADAMTS12P58397 1594 aa16.31■□□□□ 0.2
SYNE1-234ENST00000536990 HECW1Q76N89 1606 aa16.31■□□□□ 0.2
SYNE1-234ENST00000536990 TONSLQ96HA7 1378 aa16.31■□□□□ 0.2
SYNE1-234ENST00000536990 FKBP8Q14318 412 aa16.3■□□□□ 0.2
SYNE1-234ENST00000536990 MAGI3Q5TCQ9 1506 aa16.3■□□□□ 0.2
SYNE1-234ENST00000536990 ARHGEF11O15085 1522 aa16.3■□□□□ 0.2
SYNE1-234ENST00000536990 ANP32CO43423 234 aa16.29■□□□□ 0.2
SYNE1-234ENST00000536990 BCANQ96GW7 911 aa16.28■□□□□ 0.2
SYNE1-234ENST00000536990 KDM5BQ9UGL1 1544 aa16.27■□□□□ 0.2
SYNE1-234ENST00000536990 EPRSP07814 1512 aaKnown RBP16.27■□□□□ 0.19
SYNE1-234ENST00000536990 TCOF1Q13428 1488 aaKnown RBP16.25■□□□□ 0.19
SYNE1-234ENST00000536990 RRP7BPQ9NSQ0 103 aa16.24■□□□□ 0.19
SYNE1-234ENST00000536990 TRIM52Q96A61 297 aa16.23■□□□□ 0.19
SYNE1-234ENST00000536990 CHIC2Q9UKJ5 165 aa16.23■□□□□ 0.19
SYNE1-234ENST00000536990 IFT140Q96RY7 1462 aa16.23■□□□□ 0.19
SYNE1-234ENST00000536990 CDK13Q14004 1512 aaKnown RBP16.22■□□□□ 0.19
SYNE1-234ENST00000536990 WDR62O43379 1518 aa16.22■□□□□ 0.19
SYNE1-234ENST00000536990 ZNF608Q9ULD9 1512 aaPredicted RBP16.21■□□□□ 0.18
SYNE1-234ENST00000536990 ARID3CA6NKF2 412 aa16.2■□□□□ 0.18
SYNE1-234ENST00000536990 MIA2Q96PC5 1412 aa16.2■□□□□ 0.18
SYNE1-234ENST00000536990 NEFLP07196 543 aa16.19■□□□□ 0.18
SYNE1-234ENST00000536990 GCC2Q8IWJ2 1684 aa16.19■□□□□ 0.18
SYNE1-234ENST00000536990 AKNAQ7Z591 1439 aa16.18■□□□□ 0.18
SYNE1-234ENST00000536990 ANP32EQ9BTT0 268 aa16.17■□□□□ 0.18
SYNE1-234ENST00000536990 KIAA0586Q9BVV6 1533 aa16.17■□□□□ 0.18
SYNE1-234ENST00000536990 DENND4BO75064 1496 aaPredicted RBP16.16■□□□□ 0.18
SYNE1-234ENST00000536990 KIAA0556O60303 1618 aa16.14■□□□□ 0.17
SYNE1-234ENST00000536990 DISP1Q96F81 1524 aa16.14■□□□□ 0.17
SYNE1-234ENST00000536990 KDM6BO15054 1643 aa16.12■□□□□ 0.17
SYNE1-234ENST00000536990 GRIN2AQ12879 1464 aa16.11■□□□□ 0.17
SYNE1-234ENST00000536990 MPHOSPH9Q99550 1183 aa16.11■□□□□ 0.17
SYNE1-234ENST00000536990 WASHC2AQ641Q2 1341 aa16.1■□□□□ 0.17
SYNE1-234ENST00000536990 CDK11AQ9UQ88 783 aaPredicted RBP16.1■□□□□ 0.17
SYNE1-234ENST00000536990 EIF4G3O43432 1585 aaKnown RBP16.1■□□□□ 0.17
SYNE1-234ENST00000536990 NUP153P49790 1475 aaKnown RBP16.09■□□□□ 0.17
SYNE1-234ENST00000536990 HSPA5P11021 654 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms