RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 POLA1P09884 1462 aaPredicted RBP23.42■■□□□ 1.34
CHMP1A-202ENST00000535997 RAD54L2Q9Y4B4 1467 aa23.42■■□□□ 1.34
CHMP1A-202ENST00000535997 ITGAEP38570 1179 aa23.4■■□□□ 1.34
CHMP1A-202ENST00000535997 YTHDC1Q96MU7 727 aaKnown RBP23.38■■□□□ 1.33
CHMP1A-202ENST00000535997 RAB3GAP2Q9H2M9 1393 aa23.36■■□□□ 1.33
CHMP1A-202ENST00000535997 EFCAB5A4FU69 1503 aa23.35■■□□□ 1.33
CHMP1A-202ENST00000535997 CUL7Q14999 1698 aa23.35■■□□□ 1.33
CHMP1A-202ENST00000535997 NESP48681 1621 aa23.35■■□□□ 1.33
CHMP1A-202ENST00000535997 PHLDB1Q86UU1 1377 aa23.34■■□□□ 1.33
CHMP1A-202ENST00000535997 P3H3Q8IVL6 736 aa23.33■■□□□ 1.33
CHMP1A-202ENST00000535997 CFAP43Q8NDM7 1665 aa23.33■■□□□ 1.32
CHMP1A-202ENST00000535997 SETD5Q9C0A6 1442 aa23.32■■□□□ 1.32
CHMP1A-202ENST00000535997 AQRO60306 1485 aaKnown RBP eCLIP23.31■■□□□ 1.327e-7■■■■■ 29
CHMP1A-202ENST00000535997 PCF11O94913 1555 aaKnown RBP23.31■■□□□ 1.32
CHMP1A-202ENST00000535997 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
CHMP1A-202ENST00000535997 FYCO1Q9BQS8 1478 aa23.3■■□□□ 1.32
CHMP1A-202ENST00000535997 CASKIN1Q8WXD9 1431 aa23.29■■□□□ 1.32
CHMP1A-202ENST00000535997 FHOD3Q2V2M9 1422 aa23.28■■□□□ 1.32
CHMP1A-202ENST00000535997 ATP1B4Q9UN42 357 aaPredicted RBP23.26■■□□□ 1.31
CHMP1A-202ENST00000535997 FAM50AQ14320 339 aaKnown RBP23.25■■□□□ 1.31
CHMP1A-202ENST00000535997 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.25■■□□□ 1.313e-6■■■■□ 26.4
CHMP1A-202ENST00000535997 CTTNBP2Q8WZ74 1663 aa23.24■■□□□ 1.31
CHMP1A-202ENST00000535997 MAPKBP1O60336 1514 aa23.24■■□□□ 1.31
CHMP1A-202ENST00000535997 FMN1Q68DA7 1419 aa23.23■■□□□ 1.31
CHMP1A-202ENST00000535997 URB2Q14146 1524 aaKnown RBP23.23■■□□□ 1.31
CHMP1A-202ENST00000535997 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
CHMP1A-202ENST00000535997 PDS5BQ9NTI5 1447 aa23.18■■□□□ 1.3
CHMP1A-202ENST00000535997 TIMELESSQ9UNS1 1208 aa23.16■■□□□ 1.3
CHMP1A-202ENST00000535997 ABCA5Q8WWZ7 1642 aa23.14■■□□□ 1.3
CHMP1A-202ENST00000535997 TDRD9Q8NDG6 1382 aaKnown RBP23.14■■□□□ 1.3
CHMP1A-202ENST00000535997 GAPVD1Q14C86 1478 aa23.13■■□□□ 1.29
CHMP1A-202ENST00000535997 SNAPC4Q5SXM2 1469 aa23.11■■□□□ 1.29
CHMP1A-202ENST00000535997 SAMD9Q5K651 1589 aa23.08■■□□□ 1.29
CHMP1A-202ENST00000535997 FGD6Q6ZV73 1430 aa23.07■■□□□ 1.28
CHMP1A-202ENST00000535997 MTUS2Q5JR59 1369 aa23.06■■□□□ 1.28
CHMP1A-202ENST00000535997 SIN3AQ96ST3 1273 aa23.05■■□□□ 1.28
CHMP1A-202ENST00000535997 GRIN2BQ13224 1484 aa23■■□□□ 1.27
CHMP1A-202ENST00000535997 THOC2Q8NI27 1593 aaKnown RBP22.99■■□□□ 1.27
CHMP1A-202ENST00000535997 TARBP1Q13395 1621 aaKnown RBP22.96■■□□□ 1.27
CHMP1A-202ENST00000535997 DNAJC5BQ9UF47 199 aa22.96■■□□□ 1.27
CHMP1A-202ENST00000535997 KIF21AQ7Z4S6 1674 aa22.96■■□□□ 1.27
CHMP1A-202ENST00000535997 PPP1R15AO75807 674 aaPredicted RBP22.95■■□□□ 1.26
CHMP1A-202ENST00000535997 HFM1A2PYH4 1435 aa22.95■■□□□ 1.26
CHMP1A-202ENST00000535997 MYOM3Q5VTT5 1437 aa22.94■■□□□ 1.26
CHMP1A-202ENST00000535997 NCOA2Q15596 1464 aa22.94■■□□□ 1.26
CHMP1A-202ENST00000535997 LRRIQ1Q96JM4 1722 aa22.94■■□□□ 1.26
CHMP1A-202ENST00000535997 PTPRKQ15262 1439 aa22.91■■□□□ 1.26
CHMP1A-202ENST00000535997 SUPT6HQ7KZ85 1726 aaKnown RBP22.9■■□□□ 1.26
CHMP1A-202ENST00000535997 EHBP1L1Q8N3D4 1523 aa22.9■■□□□ 1.26
CHMP1A-202ENST00000535997 CCDC18Q5T9S5 1454 aa22.9■■□□□ 1.26
CHMP1A-202ENST00000535997 UACAQ9BZF9 1416 aa22.89■■□□□ 1.26
CHMP1A-202ENST00000535997 PTPN23Q9H3S7 1636 aa22.85■■□□□ 1.25
CHMP1A-202ENST00000535997 NAIPQ13075 1403 aa22.85■■□□□ 1.25
CHMP1A-202ENST00000535997 ARHGEF11O15085 1522 aa22.84■■□□□ 1.25
CHMP1A-202ENST00000535997 DDX10Q13206 875 aaKnown RBP22.84■■□□□ 1.25
CHMP1A-202ENST00000535997 UGGT2Q9NYU1 1516 aa22.84■■□□□ 1.25
CHMP1A-202ENST00000535997 PBRM1Q86U86 1689 aa22.81■■□□□ 1.24
CHMP1A-202ENST00000535997 TONSLQ96HA7 1378 aa22.81■■□□□ 1.24
CHMP1A-202ENST00000535997 IQGAP2Q13576 1575 aa22.79■■□□□ 1.24
CHMP1A-202ENST00000535997 HECW1Q76N89 1606 aa22.78■■□□□ 1.24
CHMP1A-202ENST00000535997 MAGI3Q5TCQ9 1506 aa22.78■■□□□ 1.24
CHMP1A-202ENST00000535997 TCOF1Q13428 1488 aaKnown RBP22.76■■□□□ 1.23
CHMP1A-202ENST00000535997 MRC2Q9UBG0 1479 aa22.76■■□□□ 1.23
CHMP1A-202ENST00000535997 ADAMTS12P58397 1594 aa22.76■■□□□ 1.23
CHMP1A-202ENST00000535997 EPRSP07814 1512 aaKnown RBP22.75■■□□□ 1.23
CHMP1A-202ENST00000535997 KCNH8Q96L42 1107 aa22.75■■□□□ 1.23
CHMP1A-202ENST00000535997 SUPT16HQ9Y5B9 1047 aaKnown RBP22.73■■□□□ 1.23
CHMP1A-202ENST00000535997 MIA2Q96PC5 1412 aa22.72■■□□□ 1.23
CHMP1A-202ENST00000535997 AKNAQ7Z591 1439 aa22.7■■□□□ 1.22
CHMP1A-202ENST00000535997 CCER2I3L3R5 266 aa22.69■■□□□ 1.22
CHMP1A-202ENST00000535997 HIRIP3Q9BW71 556 aaPredicted RBP22.69■■□□□ 1.22
CHMP1A-202ENST00000535997 IFT140Q96RY7 1462 aa22.67■■□□□ 1.22
CHMP1A-202ENST00000535997 RRP7BPQ9NSQ0 103 aa22.66■■□□□ 1.22
CHMP1A-202ENST00000535997 WDR62O43379 1518 aa22.66■■□□□ 1.22
CHMP1A-202ENST00000535997 ANP32CO43423 234 aa22.65■■□□□ 1.22
CHMP1A-202ENST00000535997 CHIC2Q9UKJ5 165 aa22.64■■□□□ 1.22
CHMP1A-202ENST00000535997 GCC2Q8IWJ2 1684 aa22.64■■□□□ 1.21
CHMP1A-202ENST00000535997 CDK13Q14004 1512 aaKnown RBP22.62■■□□□ 1.21
CHMP1A-202ENST00000535997 KIAA0586Q9BVV6 1533 aa22.62■■□□□ 1.21
CHMP1A-202ENST00000535997 KDM5BQ9UGL1 1544 aa22.59■■□□□ 1.21
CHMP1A-202ENST00000535997 ZNF608Q9ULD9 1512 aaPredicted RBP22.59■■□□□ 1.21
CHMP1A-202ENST00000535997 TRIM52Q96A61 297 aa22.59■■□□□ 1.21
CHMP1A-202ENST00000535997 MPHOSPH9Q99550 1183 aa22.56■■□□□ 1.2
CHMP1A-202ENST00000535997 DENND4BO75064 1496 aaPredicted RBP22.56■■□□□ 1.2
CHMP1A-202ENST00000535997 DISP1Q96F81 1524 aa22.55■■□□□ 1.2
CHMP1A-202ENST00000535997 ROCK1Q13464 1354 aa22.54■■□□□ 1.2
CHMP1A-202ENST00000535997 CDK11AQ9UQ88 783 aaPredicted RBP22.54■■□□□ 1.2
CHMP1A-202ENST00000535997 KIAA0556O60303 1618 aa22.53■■□□□ 1.2
CHMP1A-202ENST00000535997 ARID3CA6NKF2 412 aa22.52■■□□□ 1.2
CHMP1A-202ENST00000535997 KDM6BO15054 1643 aa22.51■■□□□ 1.19
CHMP1A-202ENST00000535997 GRIN2AQ12879 1464 aa22.5■■□□□ 1.19
CHMP1A-202ENST00000535997 NUP153P49790 1475 aaKnown RBP22.49■■□□□ 1.19
CHMP1A-202ENST00000535997 DAPK1P53355 1430 aa22.48■■□□□ 1.19
CHMP1A-202ENST00000535997 RAPGEF6Q8TEU7 1601 aa22.46■■□□□ 1.19
CHMP1A-202ENST00000535997 ABCC5O15440 1437 aa22.45■■□□□ 1.19
CHMP1A-202ENST00000535997 EIF4G2P78344 907 aaKnown RBP eCLIP22.44■■□□□ 1.18
CHMP1A-202ENST00000535997 DNMT1P26358 1616 aaKnown RBP22.44■■□□□ 1.18
CHMP1A-202ENST00000535997 HSPA5P11021 654 aaKnown RBP22.43■■□□□ 1.18
CHMP1A-202ENST00000535997 EIF4G3O43432 1585 aaKnown RBP22.43■■□□□ 1.18
CHMP1A-202ENST00000535997 L3MBTL2Q969R5 705 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms