RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 CCNB3Q8WWL7 1395 aa16.07■□□□□ 0.16
TRIM3-211ENST00000532542 ZNF316A6NFI3 1004 aaPredicted RBP16.05■□□□□ 0.16
TRIM3-211ENST00000532542 TRIM52Q96A61 297 aa16.04■□□□□ 0.16
TRIM3-211ENST00000532542 ABCA10Q8WWZ4 1543 aa16.04■□□□□ 0.16
TRIM3-211ENST00000532542 DNAJC5BQ9UF47 199 aa16.03■□□□□ 0.16
TRIM3-211ENST00000532542 FHOD3Q2V2M9 1422 aa16.02■□□□□ 0.16
TRIM3-211ENST00000532542 NEUROD1Q13562 356 aa16.02■□□□□ 0.15
TRIM3-211ENST00000532542 MRC2Q9UBG0 1479 aa16.01■□□□□ 0.15
TRIM3-211ENST00000532542 ARAP1Q96P48 1450 aa15.98■□□□□ 0.15
TRIM3-211ENST00000532542 ARHGAP35Q9NRY4 1499 aa15.98■□□□□ 0.15
TRIM3-211ENST00000532542 CLSPNQ9HAW4 1339 aa15.96■□□□□ 0.14
TRIM3-211ENST00000532542 URB2Q14146 1524 aaKnown RBP15.94■□□□□ 0.14
TRIM3-211ENST00000532542 ZNF777Q9ULD5 760 aaPredicted RBP15.94■□□□□ 0.14
TRIM3-211ENST00000532542 AQRO60306 1485 aaKnown RBP eCLIP15.93■□□□□ 0.14
TRIM3-211ENST00000532542 PRDM2Q13029 1718 aa15.93■□□□□ 0.14
TRIM3-211ENST00000532542 GRIN2BQ13224 1484 aa15.92■□□□□ 0.14
TRIM3-211ENST00000532542 IFT140Q96RY7 1462 aa15.91■□□□□ 0.14
TRIM3-211ENST00000532542 CARMIL2Q6F5E8 1435 aa15.89■□□□□ 0.13
TRIM3-211ENST00000532542 YTHDC1Q96MU7 727 aaKnown RBP15.89■□□□□ 0.13
TRIM3-211ENST00000532542 PLEKHD1A6NEE1 506 aa15.89■□□□□ 0.13
TRIM3-211ENST00000532542 CHIC2Q9UKJ5 165 aa15.89■□□□□ 0.13
TRIM3-211ENST00000532542 MYT1LQ9UL68 1186 aa15.89■□□□□ 0.13
TRIM3-211ENST00000532542 EFCAB5A4FU69 1503 aa15.88■□□□□ 0.13
TRIM3-211ENST00000532542 CUL7Q14999 1698 aa15.87■□□□□ 0.13
TRIM3-211ENST00000532542 ACIN1Q9UKV3 1341 aaKnown RBP15.84■□□□□ 0.13
TRIM3-211ENST00000532542 CASKIN1Q8WXD9 1431 aa15.84■□□□□ 0.13
TRIM3-211ENST00000532542 TONSLQ96HA7 1378 aa15.83■□□□□ 0.12
TRIM3-211ENST00000532542 SETD5Q9C0A6 1442 aa15.82■□□□□ 0.12
TRIM3-211ENST00000532542 LRRC9Q6ZRR7 1453 aa15.81■□□□□ 0.12
TRIM3-211ENST00000532542 FYCO1Q9BQS8 1478 aa15.81■□□□□ 0.12
TRIM3-211ENST00000532542 RRP7BPQ9NSQ0 103 aa15.81■□□□□ 0.12
TRIM3-211ENST00000532542 CFDP1Q9UEE9 299 aaPredicted RBP15.81■□□□□ 0.12
TRIM3-211ENST00000532542 JPH4Q96JJ6 628 aa15.8■□□□□ 0.12
TRIM3-211ENST00000532542 TSPY4P0CV99 314 aa15.79■□□□□ 0.12
TRIM3-211ENST00000532542 TSPY10P0CW01 314 aa15.79■□□□□ 0.12
TRIM3-211ENST00000532542 RAB3GAP2Q9H2M9 1393 aa15.76■□□□□ 0.11
TRIM3-211ENST00000532542 RRBP1Q9P2E9 1410 aaKnown RBP15.75■□□□□ 0.11
TRIM3-211ENST00000532542 PELP1Q8IZL8 1130 aaKnown RBP15.75■□□□□ 0.11
TRIM3-211ENST00000532542 CCDC18Q5T9S5 1454 aa15.74■□□□□ 0.11
TRIM3-211ENST00000532542 TIAM1Q13009 1591 aa15.74■□□□□ 0.11
TRIM3-211ENST00000532542 PHLDB1Q86UU1 1377 aa15.72■□□□□ 0.11
TRIM3-211ENST00000532542 MAP3K1Q13233 1512 aa15.72■□□□□ 0.11
TRIM3-211ENST00000532542 SNAPC4Q5SXM2 1469 aa15.72■□□□□ 0.11
TRIM3-211ENST00000532542 NPM1P06748 294 aaKnown RBP eCLIP15.71■□□□□ 0.11
TRIM3-211ENST00000532542 TIMELESSQ9UNS1 1208 aa15.69■□□□□ 0.1
TRIM3-211ENST00000532542 KIF21AQ7Z4S6 1674 aa15.69■□□□□ 0.1
TRIM3-211ENST00000532542 DHX57Q6P158 1386 aaKnown RBP15.69■□□□□ 0.1
TRIM3-211ENST00000532542 KIAA0586Q9BVV6 1533 aa15.67■□□□□ 0.1
TRIM3-211ENST00000532542 FGD6Q6ZV73 1430 aa15.67■□□□□ 0.1
TRIM3-211ENST00000532542 IQGAP2Q13576 1575 aa15.66■□□□□ 0.1
TRIM3-211ENST00000532542 SLC4A1APQ9BWU0 796 aaKnown RBP15.66■□□□□ 0.1
TRIM3-211ENST00000532542 KCNH8Q96L42 1107 aa15.65■□□□□ 0.1
TRIM3-211ENST00000532542 MYOM3Q5VTT5 1437 aa15.65■□□□□ 0.1
TRIM3-211ENST00000532542 ZNF608Q9ULD9 1512 aaPredicted RBP15.65■□□□□ 0.1
TRIM3-211ENST00000532542 PCF11O94913 1555 aaKnown RBP15.64■□□□□ 0.09
TRIM3-211ENST00000532542 SIN3AQ96ST3 1273 aa15.64■□□□□ 0.09
TRIM3-211ENST00000532542 POLR3GLQ9BT43 218 aa15.64■□□□□ 0.09
TRIM3-211ENST00000532542 ZNF326Q5BKZ1 582 aaKnown RBP15.63■□□□□ 0.09
TRIM3-211ENST00000532542 MAGI1Q96QZ7 1491 aaPredicted RBP15.63■□□□□ 0.09
TRIM3-211ENST00000532542 ANP32CO43423 234 aa15.62■□□□□ 0.09
TRIM3-211ENST00000532542 NCOA2Q15596 1464 aa15.62■□□□□ 0.09
TRIM3-211ENST00000532542 PTPRGP23470 1445 aa15.62■□□□□ 0.09
TRIM3-211ENST00000532542 SYNJ2O15056 1496 aa15.6■□□□□ 0.09
TRIM3-211ENST00000532542 GRIN2AQ12879 1464 aa15.6■□□□□ 0.09
TRIM3-211ENST00000532542 EHBP1L1Q8N3D4 1523 aa15.59■□□□□ 0.09
TRIM3-211ENST00000532542 ABCA5Q8WWZ7 1642 aa15.59■□□□□ 0.09
TRIM3-211ENST00000532542 HECW1Q76N89 1606 aa15.59■□□□□ 0.09
TRIM3-211ENST00000532542 CTTNBP2Q8WZ74 1663 aa15.57■□□□□ 0.08
TRIM3-211ENST00000532542 WDR62O43379 1518 aa15.57■□□□□ 0.08
TRIM3-211ENST00000532542 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.57■□□□□ 0.08
TRIM3-211ENST00000532542 NEFLP07196 543 aa15.54■□□□□ 0.08
TRIM3-211ENST00000532542 DDX10Q13206 875 aaKnown RBP15.54■□□□□ 0.08
TRIM3-211ENST00000532542 MIER1Q8N108 512 aa15.54■□□□□ 0.08
TRIM3-211ENST00000532542 ADAMTS12P58397 1594 aa15.53■□□□□ 0.08
TRIM3-211ENST00000532542 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.53■□□□□ 0.08
TRIM3-211ENST00000532542 EPRSP07814 1512 aaKnown RBP15.53■□□□□ 0.08
TRIM3-211ENST00000532542 ANKRD30AQ9BXX3 1397 aa15.52■□□□□ 0.07
TRIM3-211ENST00000532542 TARBP1Q13395 1621 aaKnown RBP15.51■□□□□ 0.07
TRIM3-211ENST00000532542 SUPT6HQ7KZ85 1726 aaKnown RBP15.5■□□□□ 0.07
TRIM3-211ENST00000532542 PRG4Q92954 1404 aaPredicted RBP15.5■□□□□ 0.07
TRIM3-211ENST00000532542 MIA2Q96PC5 1412 aa15.5■□□□□ 0.07
TRIM3-211ENST00000532542 MPHOSPH9Q99550 1183 aa15.5■□□□□ 0.07
TRIM3-211ENST00000532542 EIF4G2P78344 907 aaKnown RBP eCLIP15.49■□□□□ 0.07
TRIM3-211ENST00000532542 RSPH4AQ5TD94 716 aa15.49■□□□□ 0.07
TRIM3-211ENST00000532542 THOC2Q8NI27 1593 aaKnown RBP15.49■□□□□ 0.07
TRIM3-211ENST00000532542 WDR97A6NE52 1622 aa15.48■□□□□ 0.07
TRIM3-211ENST00000532542 TROQ12816 1431 aaPredicted RBP15.46■□□□□ 0.07
TRIM3-211ENST00000532542 PBRM1Q86U86 1689 aa15.46■□□□□ 0.06
TRIM3-211ENST00000532542 PPP1R15AO75807 674 aaPredicted RBP15.45■□□□□ 0.06
TRIM3-211ENST00000532542 EFCAB2Q5VUJ9 269 aa15.45■□□□□ 0.06
TRIM3-211ENST00000532542 HIRIP3Q9BW71 556 aaPredicted RBP15.45■□□□□ 0.06
TRIM3-211ENST00000532542 CDK13Q14004 1512 aaKnown RBP15.45■□□□□ 0.06
TRIM3-211ENST00000532542 UACAQ9BZF9 1416 aa15.45■□□□□ 0.06
TRIM3-211ENST00000532542 UGGT2Q9NYU1 1516 aa15.44■□□□□ 0.06
TRIM3-211ENST00000532542 EIF4G3O43432 1585 aaKnown RBP15.44■□□□□ 0.06
TRIM3-211ENST00000532542 CNGB1Q14028 1251 aaPredicted RBP15.43■□□□□ 0.06
TRIM3-211ENST00000532542 HFM1A2PYH4 1435 aa15.42■□□□□ 0.06
TRIM3-211ENST00000532542 ZNF644Q9H582 1327 aaPredicted RBP15.42■□□□□ 0.06
TRIM3-211ENST00000532542 HNRNPMP52272 730 aaKnown RBP eCLIP15.42■□□□□ 0.06
TRIM3-211ENST00000532542 GTF3C3Q9Y5Q9 886 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms