RNA–Protein interactions for RNA: ENST00000526480.1

CSTF3-207, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 479 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-207ENST00000526480 ZBTB12Q9Y330 459 aaPredicted RBP12.71□□□□□ -0.37
CSTF3-207ENST00000526480 URB2Q14146 1524 aaKnown RBP12.68□□□□□ -0.38
CSTF3-207ENST00000526480 ZNF608Q9ULD9 1512 aaPredicted RBP12.67□□□□□ -0.38
CSTF3-207ENST00000526480 FANCD2Q9BXW9 1451 aa12.65□□□□□ -0.38
CSTF3-207ENST00000526480 FBLN2P98095 1184 aa12.64□□□□□ -0.39
CSTF3-207ENST00000526480 EIF4G3O43432 1585 aaKnown RBP12.61□□□□□ -0.39
CSTF3-207ENST00000526480 RSF1Q96T23 1441 aaPredicted RBP12.59□□□□□ -0.39
CSTF3-207ENST00000526480 HAX1O00165 279 aa12.55□□□□□ -0.4
CSTF3-207ENST00000526480 MROH2BQ7Z745 1585 aa12.55□□□□□ -0.4
CSTF3-207ENST00000526480 KIF13AQ9H1H9 1805 aa12.53□□□□□ -0.4
CSTF3-207ENST00000526480 MKRN4PQ13434 485 aaPredicted RBP12.5□□□□□ -0.41
CSTF3-207ENST00000526480 PRDM2Q13029 1718 aa12.49□□□□□ -0.41
CSTF3-207ENST00000526480 CLASP1Q7Z460 1538 aa12.49□□□□□ -0.41
CSTF3-207ENST00000526480 IFT140Q96RY7 1462 aa12.49□□□□□ -0.41
CSTF3-207ENST00000526480 PLSCR2Q9NRY7 297 aa12.47□□□□□ -0.41
CSTF3-207ENST00000526480 KDM4FA0A1W2PPD8 638 aa12.44□□□□□ -0.42
CSTF3-207ENST00000526480 CFTRP13569 1480 aa12.44□□□□□ -0.42
CSTF3-207ENST00000526480 WIZO95785 1651 aa12.43□□□□□ -0.42
CSTF3-207ENST00000526480 PIP4P2Q8N4L2 257 aa12.42□□□□□ -0.42
CSTF3-207ENST00000526480 TARBP1Q13395 1621 aaKnown RBP12.39□□□□□ -0.43
CSTF3-207ENST00000526480 AQRO60306 1485 aaKnown RBP eCLIP12.38□□□□□ -0.43
CSTF3-207ENST00000526480 ERCC6L2Q5T890 1561 aa12.38□□□□□ -0.43
CSTF3-207ENST00000526480 SPDYE4A6NLX3 237 aa12.37□□□□□ -0.43
CSTF3-207ENST00000526480 HECW2Q9P2P5 1572 aa12.36□□□□□ -0.43
CSTF3-207ENST00000526480 TOPBP1Q92547 1522 aa12.35□□□□□ -0.43
CSTF3-207ENST00000526480 GAPVD1Q14C86 1478 aa12.34□□□□□ -0.43
CSTF3-207ENST00000526480 SPDYE2BA6NHP3 402 aa12.33□□□□□ -0.44
CSTF3-207ENST00000526480 SPDYE6P0CI01 402 aa12.33□□□□□ -0.44
CSTF3-207ENST00000526480 SPDYE2Q495Y8 402 aa12.33□□□□□ -0.44
CSTF3-207ENST00000526480 SYNJ1O43426 1573 aa12.32□□□□□ -0.44
CSTF3-207ENST00000526480 ZNF692Q9BU19 519 aaPredicted RBP12.31□□□□□ -0.44
CSTF3-207ENST00000526480 EVX2Q03828 476 aa12.28□□□□□ -0.44
CSTF3-207ENST00000526480 LHX8Q68G74 356 aa12.28□□□□□ -0.44
CSTF3-207ENST00000526480 AKT1S1Q96B36 256 aa12.28□□□□□ -0.44
CSTF3-207ENST00000526480 LMTK3Q96Q04 1460 aa12.27□□□□□ -0.45
CSTF3-207ENST00000526480 PROM2Q8N271 834 aa12.25□□□□□ -0.45
CSTF3-207ENST00000526480 SNAPC4Q5SXM2 1469 aa12.25□□□□□ -0.45
CSTF3-207ENST00000526480 KDM6BO15054 1643 aa12.24□□□□□ -0.45
CSTF3-207ENST00000526480 AMER1Q5JTC6 1135 aaPredicted RBP12.24□□□□□ -0.45
CSTF3-207ENST00000526480 DNMBPQ6XZF7 1577 aa12.23□□□□□ -0.45
CSTF3-207ENST00000526480 FBXO41Q8TF61 875 aa12.23□□□□□ -0.45
CSTF3-207ENST00000526480 TSPOAP1O95153 1857 aa12.22□□□□□ -0.45
CSTF3-207ENST00000526480 RTN4Q9NQC3 1192 aaKnown RBP12.21□□□□□ -0.45
CSTF3-207ENST00000526480 REM2Q8IYK8 340 aaPredicted RBP12.18□□□□□ -0.46
CSTF3-207ENST00000526480 SSUH2Q9Y2M2 353 aa12.18□□□□□ -0.46
CSTF3-207ENST00000526480 ADGRL1O94910 1474 aa12.18□□□□□ -0.46
CSTF3-207ENST00000526480 ILDR2Q71H61 639 aa12.17□□□□□ -0.46
CSTF3-207ENST00000526480 FBXO3Q9UK99 471 aa12.17□□□□□ -0.46
CSTF3-207ENST00000526480 POLA1P09884 1462 aaPredicted RBP12.16□□□□□ -0.46
CSTF3-207ENST00000526480 DIP2BQ9P265 1576 aa12.15□□□□□ -0.46
CSTF3-207ENST00000526480 FXR2P51116 673 aaKnown RBP eCLIP12.15□□□□□ -0.46
CSTF3-207ENST00000526480 RAD54L2Q9Y4B4 1467 aa12.14□□□□□ -0.47
CSTF3-207ENST00000526480 PBRM1Q86U86 1689 aa12.13□□□□□ -0.47
CSTF3-207ENST00000526480 SOCS7O14512 581 aa12.13□□□□□ -0.47
CSTF3-207ENST00000526480 TDRD9Q8NDG6 1382 aaKnown RBP12.13□□□□□ -0.47
CSTF3-207ENST00000526480 ABCC8Q09428 1581 aa12.13□□□□□ -0.47
CSTF3-207ENST00000526480 MAGI1Q96QZ7 1491 aaPredicted RBP12.12□□□□□ -0.47
CSTF3-207ENST00000526480 TOP2AP11388 1531 aaKnown RBP12.11□□□□□ -0.47
CSTF3-207ENST00000526480 SYNJ2O15056 1496 aa12.11□□□□□ -0.47
CSTF3-207ENST00000526480 CEP170Q5SW79 1584 aa12.09□□□□□ -0.47
CSTF3-207ENST00000526480 ABCC10Q5T3U5 1492 aa12.09□□□□□ -0.47
CSTF3-207ENST00000526480 WDR97A6NE52 1622 aa12.09□□□□□ -0.47
CSTF3-207ENST00000526480 CHMP7Q8WUX9 453 aaPredicted RBP12.09□□□□□ -0.47
CSTF3-207ENST00000526480 PITPNM1O00562 1244 aa12.06□□□□□ -0.48
CSTF3-207ENST00000526480 SHROOM2Q13796 1616 aa12.06□□□□□ -0.48
CSTF3-207ENST00000526480 FAM69CQ0P6D2 419 aa12.04□□□□□ -0.48
CSTF3-207ENST00000526480 GRIN2BQ13224 1484 aa12.02□□□□□ -0.48
CSTF3-207ENST00000526480 SPDYE1Q8NFV5 336 aaPredicted RBP12.02□□□□□ -0.49
CSTF3-207ENST00000526480 PPRC1Q5VV67 1664 aaKnown RBP12.02□□□□□ -0.49
CSTF3-207ENST00000526480 VASPP50552 380 aaPredicted RBP12.01□□□□□ -0.49
CSTF3-207ENST00000526480 CLEC11AQ9Y240 323 aa12.01□□□□□ -0.49
CSTF3-207ENST00000526480 MAPKBP1O60336 1514 aa12.01□□□□□ -0.49
CSTF3-207ENST00000526480 SOGA1O94964 1423 aa12□□□□□ -0.49
CSTF3-207ENST00000526480 DISP3Q9P2K9 1392 aa11.97□□□□□ -0.49
CSTF3-207ENST00000526480 ADCY10Q96PN6 1610 aa11.97□□□□□ -0.49
CSTF3-207ENST00000526480 FGD5Q6ZNL6 1462 aa11.96□□□□□ -0.49
CSTF3-207ENST00000526480 CCDC88BA6NC98 1476 aa11.95□□□□□ -0.5
CSTF3-207ENST00000526480 SPATA31D1Q6ZQQ2 1576 aa11.93□□□□□ -0.5
CSTF3-207ENST00000526480 GABBR2O75899 941 aa11.93□□□□□ -0.5
CSTF3-207ENST00000526480 STAG3Q9UJ98 1225 aa11.93□□□□□ -0.5
CSTF3-207ENST00000526480 ABCA5Q8WWZ7 1642 aa11.92□□□□□ -0.5
CSTF3-207ENST00000526480 GRIN2AQ12879 1464 aa11.91□□□□□ -0.5
CSTF3-207ENST00000526480 NUP160Q12769 1436 aa11.89□□□□□ -0.51
CSTF3-207ENST00000526480 ADAMTS12P58397 1594 aa11.88□□□□□ -0.51
CSTF3-207ENST00000526480 PRR29P0C7W0 189 aa11.87□□□□□ -0.51
CSTF3-207ENST00000526480 COL17A1Q9UMD9 1497 aaPredicted RBP11.87□□□□□ -0.51
CSTF3-207ENST00000526480 IFNLR1Q8IU57 520 aaPredicted RBP11.86□□□□□ -0.51
CSTF3-207ENST00000526480 TOP2BQ02880 1626 aa11.85□□□□□ -0.51
CSTF3-207ENST00000526480 CUX1P39880 1505 aa11.85□□□□□ -0.51
CSTF3-207ENST00000526480 PRG4Q92954 1404 aaPredicted RBP11.82□□□□□ -0.52
CSTF3-207ENST00000526480 KIF21BO75037 1637 aa11.8□□□□□ -0.52
CSTF3-207ENST00000526480 C19orf67A6NJJ6 358 aa11.8□□□□□ -0.52
CSTF3-207ENST00000526480 PRKAR2AP13861 404 aaKnown RBP11.76□□□□□ -0.53
CSTF3-207ENST00000526480 GLI2P10070 1586 aa11.75□□□□□ -0.53
CSTF3-207ENST00000526480 RUSC2Q8N2Y8 1516 aa11.75□□□□□ -0.53
CSTF3-207ENST00000526480 MAP3K4Q9Y6R4 1608 aa11.75□□□□□ -0.53
CSTF3-207ENST00000526480 NPM1P06748 294 aaKnown RBP eCLIP11.74□□□□□ -0.53
CSTF3-207ENST00000526480 ABCA10Q8WWZ4 1543 aa11.74□□□□□ -0.53
CSTF3-207ENST00000526480 PCF11O94913 1555 aaKnown RBP11.74□□□□□ -0.53
CSTF3-207ENST00000526480 CUL7Q14999 1698 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms