RNA–Protein interactions for RNA: ENST00000524454.1

VPS11-201, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 626 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-201ENST00000524454 RIMBP3CA6NJZ7 1639 aa11.89□□□□□ -0.51
VPS11-201ENST00000524454 RIMBP3BA6NNM3 1639 aa11.89□□□□□ -0.51
VPS11-201ENST00000524454 RIMBP3Q9UFD9 1639 aa11.89□□□□□ -0.51
VPS11-201ENST00000524454 MAGI1Q96QZ7 1491 aaPredicted RBP11.89□□□□□ -0.51
VPS11-201ENST00000524454 TRIM41Q8WV44 630 aa11.87□□□□□ -0.51
VPS11-201ENST00000524454 ADAMTS12P58397 1594 aa11.85□□□□□ -0.51
VPS11-201ENST00000524454 SYNJ2O15056 1496 aa11.85□□□□□ -0.51
VPS11-201ENST00000524454 ZBTB22O15209 634 aa11.85□□□□□ -0.51
VPS11-201ENST00000524454 CHMP7Q8WUX9 453 aaPredicted RBP11.85□□□□□ -0.51
VPS11-201ENST00000524454 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS11-201ENST00000524454 ARHGEF11O15085 1522 aa11.83□□□□□ -0.52
VPS11-201ENST00000524454 CLASP1Q7Z460 1538 aa11.82□□□□□ -0.52
VPS11-201ENST00000524454 ERICH3Q5RHP9 1530 aa11.8□□□□□ -0.52
VPS11-201ENST00000524454 GRIN2AQ12879 1464 aa11.79□□□□□ -0.52
VPS11-201ENST00000524454 CEP170Q5SW79 1584 aa11.79□□□□□ -0.52
VPS11-201ENST00000524454 RNF39Q9H2S5 420 aa11.77□□□□□ -0.53
VPS11-201ENST00000524454 EHMT2Q96KQ7 1210 aa11.76□□□□□ -0.53
VPS11-201ENST00000524454 FHAD1B1AJZ9 1412 aa11.76□□□□□ -0.53
VPS11-201ENST00000524454 FOXD4L1Q9NU39 408 aa11.75□□□□□ -0.53
VPS11-201ENST00000524454 ARAP1Q96P48 1450 aa11.75□□□□□ -0.53
VPS11-201ENST00000524454 U3KPZ7 1027 aaPredicted RBP11.74□□□□□ -0.53
VPS11-201ENST00000524454 KIF27Q86VH2 1401 aa11.73□□□□□ -0.53
VPS11-201ENST00000524454 ERCC6L2Q5T890 1561 aa11.72□□□□□ -0.53
VPS11-201ENST00000524454 CYB5RLQ6IPT4 315 aa11.72□□□□□ -0.53
VPS11-201ENST00000524454 NUP160Q12769 1436 aa11.71□□□□□ -0.53
VPS11-201ENST00000524454 CUL7Q14999 1698 aa11.71□□□□□ -0.54
VPS11-201ENST00000524454 RUSC2Q8N2Y8 1516 aa11.7□□□□□ -0.54
VPS11-201ENST00000524454 IGF1RP08069 1367 aa11.69□□□□□ -0.54
VPS11-201ENST00000524454 CSRNP3Q8WYN3 585 aa11.69□□□□□ -0.54
VPS11-201ENST00000524454 SHROOM2Q13796 1616 aa11.68□□□□□ -0.54
VPS11-201ENST00000524454 CARMIL1Q5VZK9 1371 aa11.63□□□□□ -0.55
VPS11-201ENST00000524454 PRG4Q92954 1404 aaPredicted RBP11.6□□□□□ -0.55
VPS11-201ENST00000524454 MYCNP04198 464 aaPredicted RBP11.6□□□□□ -0.55
VPS11-201ENST00000524454 JPH4Q96JJ6 628 aa11.58□□□□□ -0.56
VPS11-201ENST00000524454 KIAA0586Q9BVV6 1533 aa11.57□□□□□ -0.56
VPS11-201ENST00000524454 C1QBPQ07021 282 aaKnown RBP11.57□□□□□ -0.56
VPS11-201ENST00000524454 EEA1Q15075 1411 aa11.56□□□□□ -0.56
VPS11-201ENST00000524454 RAPGEF2Q9Y4G8 1499 aa11.56□□□□□ -0.56
VPS11-201ENST00000524454 CTTNBP2Q8WZ74 1663 aa11.55□□□□□ -0.56
VPS11-201ENST00000524454 IQGAP2Q13576 1575 aa11.54□□□□□ -0.56
VPS11-201ENST00000524454 TTBK1Q5TCY1 1321 aaPredicted RBP11.53□□□□□ -0.56
VPS11-201ENST00000524454 TRHP20396 242 aaPredicted RBP11.52□□□□□ -0.57
VPS11-201ENST00000524454 FAM9AQ8IZU1 332 aaPredicted RBP11.52□□□□□ -0.57
VPS11-201ENST00000524454 PRXQ9BXM0 1461 aa11.5□□□□□ -0.57
VPS11-201ENST00000524454 ADCY10Q96PN6 1610 aa11.49□□□□□ -0.57
VPS11-201ENST00000524454 DISP1Q96F81 1524 aa11.46□□□□□ -0.57
VPS11-201ENST00000524454 KIAA0556O60303 1618 aa11.46□□□□□ -0.58
VPS11-201ENST00000524454 UGGT2Q9NYU1 1516 aa11.45□□□□□ -0.58
VPS11-201ENST00000524454 CARMIL2Q6F5E8 1435 aa11.44□□□□□ -0.58
VPS11-201ENST00000524454 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.44□□□□□ -0.58
VPS11-201ENST00000524454 HNRNPUL2Q1KMD3 747 aaKnown RBP11.44□□□□□ -0.58
VPS11-201ENST00000524454 SAMD1Q6SPF0 538 aaPredicted RBP11.44□□□□□ -0.58
VPS11-201ENST00000524454 KIF13AQ9H1H9 1805 aa11.43□□□□□ -0.58
VPS11-201ENST00000524454 PTPRGP23470 1445 aa11.43□□□□□ -0.58
VPS11-201ENST00000524454 TNIKQ9UKE5 1360 aa11.42□□□□□ -0.58
VPS11-201ENST00000524454 CACNB1Q02641 598 aaPredicted RBP11.42□□□□□ -0.58
VPS11-201ENST00000524454 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
VPS11-201ENST00000524454 RANGAP1P46060 587 aaPredicted RBP11.39□□□□□ -0.59
VPS11-201ENST00000524454 KIF21BO75037 1637 aa11.38□□□□□ -0.59
VPS11-201ENST00000524454 ATF5Q9Y2D1 282 aaPredicted RBP11.38□□□□□ -0.59
VPS11-201ENST00000524454 P3H3Q8IVL6 736 aa11.37□□□□□ -0.59
VPS11-201ENST00000524454 NPM1P06748 294 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS11-201ENST00000524454 MAPKBP1O60336 1514 aa11.35□□□□□ -0.59
VPS11-201ENST00000524454 ABCC2Q92887 1545 aa11.35□□□□□ -0.59
VPS11-201ENST00000524454 ZCCHC11Q5TAX3 1644 aaKnown RBP11.35□□□□□ -0.59
VPS11-201ENST00000524454 GOLGA3Q08378 1498 aa11.35□□□□□ -0.59
VPS11-201ENST00000524454 PLB1Q6P1J6 1458 aa11.35□□□□□ -0.59
VPS11-201ENST00000524454 SAMD9Q5K651 1589 aa11.35□□□□□ -0.59
VPS11-201ENST00000524454 DIP2BQ9P265 1576 aa11.35□□□□□ -0.59
VPS11-201ENST00000524454 UACAQ9BZF9 1416 aa11.35□□□□□ -0.59
VPS11-201ENST00000524454 TSPOAP1O95153 1857 aa11.34□□□□□ -0.59
VPS11-201ENST00000524454 UHRF1BP1LA0JNW5 1464 aa11.32□□□□□ -0.6
VPS11-201ENST00000524454 ATXN8OSP0DMR3 200 aa11.32□□□□□ -0.6
VPS11-201ENST00000524454 ABCA8O94911 1581 aa11.32□□□□□ -0.6
VPS11-201ENST00000524454 ABCC10Q5T3U5 1492 aa11.32□□□□□ -0.6
VPS11-201ENST00000524454 FAM69CQ0P6D2 419 aa11.31□□□□□ -0.6
VPS11-201ENST00000524454 ASXL2Q76L83 1435 aa11.3□□□□□ -0.6
VPS11-201ENST00000524454 ARID3CA6NKF2 412 aa11.3□□□□□ -0.6
VPS11-201ENST00000524454 CAPN15O75808 1086 aa11.3□□□□□ -0.6
VPS11-201ENST00000524454 APLP2Q06481 763 aa11.3□□□□□ -0.6
VPS11-201ENST00000524454 FHOD3Q2V2M9 1422 aa11.29□□□□□ -0.6
VPS11-201ENST00000524454 KDM5BQ9UGL1 1544 aa11.29□□□□□ -0.6
VPS11-201ENST00000524454 UBTFP17480 764 aaKnown RBP11.28□□□□□ -0.6
VPS11-201ENST00000524454 RAPGEF6Q8TEU7 1601 aa11.27□□□□□ -0.61
VPS11-201ENST00000524454 LOC105371045A0A1W2PR82 267 aa11.26□□□□□ -0.61
VPS11-201ENST00000524454 PPRC1Q5VV67 1664 aaKnown RBP11.25□□□□□ -0.61
VPS11-201ENST00000524454 EFCAB5A4FU69 1503 aa11.24□□□□□ -0.61
VPS11-201ENST00000524454 ZNF219Q9P2Y4 722 aaPredicted RBP11.23□□□□□ -0.61
VPS11-201ENST00000524454 EPRSP07814 1512 aaKnown RBP11.23□□□□□ -0.61
VPS11-201ENST00000524454 GLI2P10070 1586 aa11.22□□□□□ -0.61
VPS11-201ENST00000524454 WDR7Q9Y4E6 1490 aa11.22□□□□□ -0.61
VPS11-201ENST00000524454 MAP3K4Q9Y6R4 1608 aa11.22□□□□□ -0.61
VPS11-201ENST00000524454 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.61
VPS11-201ENST00000524454 ATP10BO94823 1461 aa11.2□□□□□ -0.62
VPS11-201ENST00000524454 NUP153P49790 1475 aaKnown RBP11.2□□□□□ -0.62
VPS11-201ENST00000524454 KDM6BO15054 1643 aa11.2□□□□□ -0.62
VPS11-201ENST00000524454 KCNH8Q96L42 1107 aa11.19□□□□□ -0.62
VPS11-201ENST00000524454 DSG3P32926 999 aa11.18□□□□□ -0.62
VPS11-201ENST00000524454 LRRIQ1Q96JM4 1722 aa11.17□□□□□ -0.62
VPS11-201ENST00000524454 CEP162Q5TB80 1403 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms