RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 ITGAEP38570 1179 aa16.2■□□□□ 0.18
HDAC9-228ENST00000524023 CFAP43Q8NDM7 1665 aa16.19■□□□□ 0.18
HDAC9-228ENST00000524023 RAD54L2Q9Y4B4 1467 aa16.19■□□□□ 0.18
HDAC9-228ENST00000524023 TOPBP1Q92547 1522 aa16.19■□□□□ 0.18
HDAC9-228ENST00000524023 POLA1P09884 1462 aaPredicted RBP16.18■□□□□ 0.18
HDAC9-228ENST00000524023 RAB3GAP2Q9H2M9 1393 aa16.18■□□□□ 0.18
HDAC9-228ENST00000524023 PCF11O94913 1555 aaKnown RBP16.17■□□□□ 0.18
HDAC9-228ENST00000524023 PHLDB1Q86UU1 1377 aa16.16■□□□□ 0.18
HDAC9-228ENST00000524023 CUL7Q14999 1698 aa16.14■□□□□ 0.17
HDAC9-228ENST00000524023 NESP48681 1621 aa16.14■□□□□ 0.17
HDAC9-228ENST00000524023 EFCAB5A4FU69 1503 aa16.13■□□□□ 0.17
HDAC9-228ENST00000524023 MAPKBP1O60336 1514 aa16.13■□□□□ 0.17
HDAC9-228ENST00000524023 P3H3Q8IVL6 736 aa16.13■□□□□ 0.17
HDAC9-228ENST00000524023 SETD5Q9C0A6 1442 aa16.12■□□□□ 0.17
HDAC9-228ENST00000524023 FHOD3Q2V2M9 1422 aa16.12■□□□□ 0.17
HDAC9-228ENST00000524023 CTTNBP2Q8WZ74 1663 aa16.11■□□□□ 0.17
HDAC9-228ENST00000524023 FYCO1Q9BQS8 1478 aa16.11■□□□□ 0.17
HDAC9-228ENST00000524023 CASKIN1Q8WXD9 1431 aa16.09■□□□□ 0.17
HDAC9-228ENST00000524023 AQRO60306 1485 aaKnown RBP eCLIP16.08■□□□□ 0.17
HDAC9-228ENST00000524023 WDR97A6NE52 1622 aa16.08■□□□□ 0.16
HDAC9-228ENST00000524023 LAMC3Q9Y6N6 1575 aa16.07■□□□□ 0.16
HDAC9-228ENST00000524023 FAM50AQ14320 339 aaKnown RBP16.07■□□□□ 0.16
HDAC9-228ENST00000524023 ATP1B4Q9UN42 357 aaPredicted RBP16.06■□□□□ 0.16
HDAC9-228ENST00000524023 URB2Q14146 1524 aaKnown RBP16.05■□□□□ 0.16
HDAC9-228ENST00000524023 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.02■□□□□ 0.16
HDAC9-228ENST00000524023 FMN1Q68DA7 1419 aa16.02■□□□□ 0.15
HDAC9-228ENST00000524023 ABCA5Q8WWZ7 1642 aa16.01■□□□□ 0.15
HDAC9-228ENST00000524023 SNAPC4Q5SXM2 1469 aa16■□□□□ 0.15
HDAC9-228ENST00000524023 SAMD9Q5K651 1589 aa15.98■□□□□ 0.15
HDAC9-228ENST00000524023 TDRD9Q8NDG6 1382 aaKnown RBP15.96■□□□□ 0.15
HDAC9-228ENST00000524023 SIN3AQ96ST3 1273 aa15.96■□□□□ 0.15
HDAC9-228ENST00000524023 GAPVD1Q14C86 1478 aa15.96■□□□□ 0.15
HDAC9-228ENST00000524023 FGD6Q6ZV73 1430 aa15.96■□□□□ 0.14
HDAC9-228ENST00000524023 PDS5BQ9NTI5 1447 aa15.94■□□□□ 0.14
HDAC9-228ENST00000524023 LRRIQ1Q96JM4 1722 aa15.94■□□□□ 0.14
HDAC9-228ENST00000524023 TIMELESSQ9UNS1 1208 aa15.94■□□□□ 0.14
HDAC9-228ENST00000524023 MTUS2Q5JR59 1369 aa15.92■□□□□ 0.14
HDAC9-228ENST00000524023 GRIN2BQ13224 1484 aa15.91■□□□□ 0.14
HDAC9-228ENST00000524023 KIF21AQ7Z4S6 1674 aa15.9■□□□□ 0.14
HDAC9-228ENST00000524023 THOC2Q8NI27 1593 aaKnown RBP15.9■□□□□ 0.14
HDAC9-228ENST00000524023 TARBP1Q13395 1621 aaKnown RBP15.87■□□□□ 0.13
HDAC9-228ENST00000524023 NCOA2Q15596 1464 aa15.87■□□□□ 0.13
HDAC9-228ENST00000524023 PTPRKQ15262 1439 aa15.86■□□□□ 0.13
HDAC9-228ENST00000524023 CCDC18Q5T9S5 1454 aa15.86■□□□□ 0.13
HDAC9-228ENST00000524023 SUPT6HQ7KZ85 1726 aaKnown RBP15.86■□□□□ 0.13
HDAC9-228ENST00000524023 HFM1A2PYH4 1435 aa15.86■□□□□ 0.13
HDAC9-228ENST00000524023 PPP1R15AO75807 674 aaPredicted RBP15.85■□□□□ 0.13
HDAC9-228ENST00000524023 DNAJC5BQ9UF47 199 aa15.85■□□□□ 0.13
HDAC9-228ENST00000524023 MYOM3Q5VTT5 1437 aa15.85■□□□□ 0.13
HDAC9-228ENST00000524023 EHBP1L1Q8N3D4 1523 aa15.85■□□□□ 0.13
HDAC9-228ENST00000524023 PTPN23Q9H3S7 1636 aa15.85■□□□□ 0.13
HDAC9-228ENST00000524023 UACAQ9BZF9 1416 aa15.82■□□□□ 0.12
HDAC9-228ENST00000524023 DDX10Q13206 875 aaKnown RBP15.82■□□□□ 0.12
HDAC9-228ENST00000524023 PBRM1Q86U86 1689 aa15.81■□□□□ 0.12
HDAC9-228ENST00000524023 NAIPQ13075 1403 aa15.81■□□□□ 0.12
HDAC9-228ENST00000524023 UGGT2Q9NYU1 1516 aa15.81■□□□□ 0.12
HDAC9-228ENST00000524023 KCNH8Q96L42 1107 aa15.8■□□□□ 0.12
HDAC9-228ENST00000524023 ARHGEF11O15085 1522 aa15.8■□□□□ 0.12
HDAC9-228ENST00000524023 SUPT16HQ9Y5B9 1047 aaKnown RBP15.79■□□□□ 0.12
HDAC9-228ENST00000524023 MAGI3Q5TCQ9 1506 aa15.79■□□□□ 0.12
HDAC9-228ENST00000524023 TONSLQ96HA7 1378 aa15.77■□□□□ 0.12
HDAC9-228ENST00000524023 HECW1Q76N89 1606 aa15.76■□□□□ 0.11
HDAC9-228ENST00000524023 IQGAP2Q13576 1575 aa15.76■□□□□ 0.11
HDAC9-228ENST00000524023 ADAMTS12P58397 1594 aa15.75■□□□□ 0.11
HDAC9-228ENST00000524023 HIRIP3Q9BW71 556 aaPredicted RBP15.74■□□□□ 0.11
HDAC9-228ENST00000524023 TCOF1Q13428 1488 aaKnown RBP15.74■□□□□ 0.11
HDAC9-228ENST00000524023 EPRSP07814 1512 aaKnown RBP15.72■□□□□ 0.11
HDAC9-228ENST00000524023 GCC2Q8IWJ2 1684 aa15.71■□□□□ 0.11
HDAC9-228ENST00000524023 MRC2Q9UBG0 1479 aa15.7■□□□□ 0.1
HDAC9-228ENST00000524023 KDM5BQ9UGL1 1544 aa15.69■□□□□ 0.1
HDAC9-228ENST00000524023 WDR62O43379 1518 aa15.68■□□□□ 0.1
HDAC9-228ENST00000524023 CCER2I3L3R5 266 aa15.68■□□□□ 0.1
HDAC9-228ENST00000524023 CDK13Q14004 1512 aaKnown RBP15.67■□□□□ 0.1
HDAC9-228ENST00000524023 AKNAQ7Z591 1439 aa15.67■□□□□ 0.1
HDAC9-228ENST00000524023 RRP7BPQ9NSQ0 103 aa15.67■□□□□ 0.1
HDAC9-228ENST00000524023 MIA2Q96PC5 1412 aa15.67■□□□□ 0.1
HDAC9-228ENST00000524023 ANP32CO43423 234 aa15.66■□□□□ 0.1
HDAC9-228ENST00000524023 CHIC2Q9UKJ5 165 aa15.66■□□□□ 0.1
HDAC9-228ENST00000524023 DENND4BO75064 1496 aaPredicted RBP15.64■□□□□ 0.09
HDAC9-228ENST00000524023 KDM6BO15054 1643 aa15.64■□□□□ 0.09
HDAC9-228ENST00000524023 IFT140Q96RY7 1462 aa15.62■□□□□ 0.09
HDAC9-228ENST00000524023 ZNF608Q9ULD9 1512 aaPredicted RBP15.61■□□□□ 0.09
HDAC9-228ENST00000524023 TRIM52Q96A61 297 aa15.6■□□□□ 0.09
HDAC9-228ENST00000524023 KIAA0556O60303 1618 aa15.59■□□□□ 0.09
HDAC9-228ENST00000524023 KIAA0586Q9BVV6 1533 aa15.59■□□□□ 0.09
HDAC9-228ENST00000524023 ARID3CA6NKF2 412 aa15.59■□□□□ 0.09
HDAC9-228ENST00000524023 DISP1Q96F81 1524 aa15.59■□□□□ 0.09
HDAC9-228ENST00000524023 MPHOSPH9Q99550 1183 aa15.57■□□□□ 0.08
HDAC9-228ENST00000524023 NUP153P49790 1475 aaKnown RBP15.55■□□□□ 0.08
HDAC9-228ENST00000524023 DAPK1P53355 1430 aa15.55■□□□□ 0.08
HDAC9-228ENST00000524023 ROCK1Q13464 1354 aa15.55■□□□□ 0.08
HDAC9-228ENST00000524023 DNMT1P26358 1616 aaKnown RBP15.54■□□□□ 0.08
HDAC9-228ENST00000524023 RAPGEF6Q8TEU7 1601 aa15.54■□□□□ 0.08
HDAC9-228ENST00000524023 GRIN2AQ12879 1464 aa15.53■□□□□ 0.08
HDAC9-228ENST00000524023 HSPA5P11021 654 aaKnown RBP15.53■□□□□ 0.08
HDAC9-228ENST00000524023 MYT1Q01538 1121 aa15.53■□□□□ 0.08
HDAC9-228ENST00000524023 FKBP8Q14318 412 aa15.52■□□□□ 0.08
HDAC9-228ENST00000524023 ABCC5O15440 1437 aa15.52■□□□□ 0.08
HDAC9-228ENST00000524023 EIF4G3O43432 1585 aaKnown RBP15.52■□□□□ 0.07
HDAC9-228ENST00000524023 WASHC2AQ641Q2 1341 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms