RNA–Protein interactions for RNA: ENST00000510377.5

USP38-202, Transcript of ubiquitin specific peptidase 38, humanhuman

TSL 1 (best) BASIC

Gene USP38, Length 4,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-202ENST00000510377 RBM19Q9Y4C8 960 aaKnown RBP20.55■□□□□ 0.88
USP38-202ENST00000510377 RRP7BPQ9NSQ0 103 aa20.53■□□□□ 0.88
USP38-202ENST00000510377 RTL5Q5HYW3 569 aaPredicted RBP20.5■□□□□ 0.87
USP38-202ENST00000510377 MRS2Q9HD23 443 aa20.49■□□□□ 0.87
USP38-202ENST00000510377 MTUS2Q5JR59 1369 aa20.48■□□□□ 0.87
USP38-202ENST00000510377 NBR1Q14596 966 aa20.46■□□□□ 0.87
USP38-202ENST00000510377 SETD5Q9C0A6 1442 aa20.45■□□□□ 0.86
USP38-202ENST00000510377 BCL11AQ9H165 835 aa20.43■□□□□ 0.86
USP38-202ENST00000510377 KIF21BO75037 1637 aa20.42■□□□□ 0.86
USP38-202ENST00000510377 NPM2Q86SE8 214 aaKnown RBP20.41■□□□□ 0.86
USP38-202ENST00000510377 SALL2Q9Y467 1007 aaPredicted RBP20.4■□□□□ 0.86
USP38-202ENST00000510377 CUX2O14529 1486 aa20.38■□□□□ 0.85
USP38-202ENST00000510377 EIF4G2P78344 907 aaKnown RBP eCLIP20.38■□□□□ 0.85
USP38-202ENST00000510377 SYNJ1O43426 1573 aa20.38■□□□□ 0.85
USP38-202ENST00000510377 PPP1R15AO75807 674 aaPredicted RBP20.36■□□□□ 0.85
USP38-202ENST00000510377 B4GALNT3Q6L9W6 998 aa20.36■□□□□ 0.85
USP38-202ENST00000510377 CARMIL1Q5VZK9 1371 aa20.35■□□□□ 0.85
USP38-202ENST00000510377 ZNF777Q9ULD5 760 aaPredicted RBP20.35■□□□□ 0.85
USP38-202ENST00000510377 ATAD2BQ9ULI0 1458 aa20.34■□□□□ 0.85
USP38-202ENST00000510377 CCER2I3L3R5 266 aa20.34■□□□□ 0.85
USP38-202ENST00000510377 ERCC6Q03468 1493 aa20.34■□□□□ 0.85
USP38-202ENST00000510377 DAXXQ9UER7 740 aaPredicted RBP20.33■□□□□ 0.84
USP38-202ENST00000510377 ANP32AP39687 249 aaKnown RBP20.32■□□□□ 0.84
USP38-202ENST00000510377 CCDC136Q96JN2 1154 aa20.31■□□□□ 0.84
USP38-202ENST00000510377 CHMP7Q8WUX9 453 aaPredicted RBP20.3■□□□□ 0.84
USP38-202ENST00000510377 ARAP1Q96P48 1450 aa20.27■□□□□ 0.84
USP38-202ENST00000510377 FOXD1Q16676 465 aa20.25■□□□□ 0.83
USP38-202ENST00000510377 HSPA5P11021 654 aaKnown RBP20.25■□□□□ 0.83
USP38-202ENST00000510377 TIMELESSQ9UNS1 1208 aa20.23■□□□□ 0.83
USP38-202ENST00000510377 PPP4R2Q9NY27 417 aa20.22■□□□□ 0.83
USP38-202ENST00000510377 TMC1Q8TDI8 760 aa20.21■□□□□ 0.83
USP38-202ENST00000510377 FHAD1B1AJZ9 1412 aa20.21■□□□□ 0.83
USP38-202ENST00000510377 SLC4A1APQ9BWU0 796 aaKnown RBP20.2■□□□□ 0.82
USP38-202ENST00000510377 KDM2AQ9Y2K7 1162 aa20.17■□□□□ 0.82
USP38-202ENST00000510377 FHOD3Q2V2M9 1422 aa20.17■□□□□ 0.82
USP38-202ENST00000510377 ARHGAP35Q9NRY4 1499 aa20.17■□□□□ 0.82
USP38-202ENST00000510377 EIF4G1Q04637 1599 aaKnown RBP20.16■□□□□ 0.82
USP38-202ENST00000510377 PHLDB1Q86UU1 1377 aa20.16■□□□□ 0.82
USP38-202ENST00000510377 ZBTB47Q9UFB7 747 aaPredicted RBP20.15■□□□□ 0.82
USP38-202ENST00000510377 RRBP1Q9P2E9 1410 aaKnown RBP20.13■□□□□ 0.81
USP38-202ENST00000510377 PRXQ9BXM0 1461 aa20.06■□□□□ 0.8
USP38-202ENST00000510377 IGF1RP08069 1367 aa20.05■□□□□ 0.8
USP38-202ENST00000510377 NOP58Q9Y2X3 529 aaKnown RBP20.04■□□□□ 0.8
USP38-202ENST00000510377 L3MBTL2Q969R5 705 aa20.04■□□□□ 0.8
USP38-202ENST00000510377 DEKP35659 375 aaKnown RBP20.03■□□□□ 0.8
USP38-202ENST00000510377 DNAJC5BQ9UF47 199 aa20.03■□□□□ 0.8
USP38-202ENST00000510377 WDR97A6NE52 1622 aa20.02■□□□□ 0.8
USP38-202ENST00000510377 CADPSQ9ULU8 1353 aa20.01■□□□□ 0.79
USP38-202ENST00000510377 PDS5BQ9NTI5 1447 aa19.99■□□□□ 0.79
USP38-202ENST00000510377 MPHOSPH9Q99550 1183 aa19.99■□□□□ 0.79
USP38-202ENST00000510377 NPM1P06748 294 aaKnown RBP eCLIP19.97■□□□□ 0.79
USP38-202ENST00000510377 LRRC9Q6ZRR7 1453 aa19.97■□□□□ 0.79
USP38-202ENST00000510377 LAS1LQ9Y4W2 734 aaKnown RBP19.96■□□□□ 0.79
USP38-202ENST00000510377 TDRD9Q8NDG6 1382 aaKnown RBP19.95■□□□□ 0.78
USP38-202ENST00000510377 ERICH3Q5RHP9 1530 aa19.95■□□□□ 0.78
USP38-202ENST00000510377 RTN4Q9NQC3 1192 aaKnown RBP19.94■□□□□ 0.78
USP38-202ENST00000510377 CCDC18Q5T9S5 1454 aa19.93■□□□□ 0.78
USP38-202ENST00000510377 TOP2BQ02880 1626 aa19.92■□□□□ 0.78
USP38-202ENST00000510377 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.92■□□□□ 0.78
USP38-202ENST00000510377 CCDC184Q52MB2 194 aa19.91■□□□□ 0.78
USP38-202ENST00000510377 PRKRIP1Q9H875 184 aaPredicted RBP19.91■□□□□ 0.78
USP38-202ENST00000510377 CARD11Q9BXL7 1154 aa19.91■□□□□ 0.78
USP38-202ENST00000510377 RGL3Q3MIN7 710 aa19.91■□□□□ 0.78
USP38-202ENST00000510377 FMN1Q68DA7 1419 aa19.9■□□□□ 0.78
USP38-202ENST00000510377 WASHC2AQ641Q2 1341 aa19.9■□□□□ 0.78
USP38-202ENST00000510377 MSH5O43196 834 aa19.88■□□□□ 0.77
USP38-202ENST00000510377 CUX1P39880 1505 aa19.88■□□□□ 0.77
USP38-202ENST00000510377 CFDP1Q9UEE9 299 aaPredicted RBP19.87■□□□□ 0.77
USP38-202ENST00000510377 FANCIQ9NVI1 1328 aa19.85■□□□□ 0.77
USP38-202ENST00000510377 ERICH6BQ5W0A0 696 aa19.84■□□□□ 0.77
USP38-202ENST00000510377 FGD5Q6ZNL6 1462 aa19.84■□□□□ 0.77
USP38-202ENST00000510377 FGD6Q6ZV73 1430 aa19.83■□□□□ 0.76
USP38-202ENST00000510377 TSPY4P0CV99 314 aa19.81■□□□□ 0.76
USP38-202ENST00000510377 TSPY10P0CW01 314 aa19.81■□□□□ 0.76
USP38-202ENST00000510377 EIF5BO60841 1220 aaKnown RBP19.81■□□□□ 0.76
USP38-202ENST00000510377 CANXP27824 592 aaKnown RBP19.81■□□□□ 0.76
USP38-202ENST00000510377 NEFMP07197 916 aa19.8■□□□□ 0.76
USP38-202ENST00000510377 RAD54L2Q9Y4B4 1467 aa19.8■□□□□ 0.76
USP38-202ENST00000510377 NCAPD3P42695 1498 aa19.79■□□□□ 0.76
USP38-202ENST00000510377 TIAM1Q13009 1591 aa19.79■□□□□ 0.76
USP38-202ENST00000510377 PKD2Q13563 968 aa19.78■□□□□ 0.76
USP38-202ENST00000510377 BICRAQ9NZM4 1560 aa19.78■□□□□ 0.76
USP38-202ENST00000510377 NUDCQ9Y266 331 aa19.78■□□□□ 0.76
USP38-202ENST00000510377 CC2D1BQ5T0F9 858 aaKnown RBP19.77■□□□□ 0.76
USP38-202ENST00000510377 MAPKBP1O60336 1514 aa19.77■□□□□ 0.75
USP38-202ENST00000510377 UACAQ9BZF9 1416 aa19.77■□□□□ 0.75
USP38-202ENST00000510377 DCAF11Q8TEB1 546 aa19.76■□□□□ 0.75
USP38-202ENST00000510377 ZBED9Q6R2W3 1325 aa19.76■□□□□ 0.75
USP38-202ENST00000510377 FANCD2Q9BXW9 1451 aa19.74■□□□□ 0.75
USP38-202ENST00000510377 ARXQ96QS3 562 aa19.73■□□□□ 0.75
USP38-202ENST00000510377 PLPPR3Q6T4P5 718 aa19.73■□□□□ 0.75
USP38-202ENST00000510377 CC2D2AQ9P2K1 1620 aa19.72■□□□□ 0.75
USP38-202ENST00000510377 IPO9Q96P70 1041 aaKnown RBP19.71■□□□□ 0.75
USP38-202ENST00000510377 WDR43Q15061 677 aaKnown RBP eCLIP19.7■□□□□ 0.74
USP38-202ENST00000510377 KIF7Q2M1P5 1343 aa19.7■□□□□ 0.74
USP38-202ENST00000510377 CCDC7Q96M83 1385 aa19.7■□□□□ 0.74
USP38-202ENST00000510377 PAK3O75914 559 aaPredicted RBP19.69■□□□□ 0.74
USP38-202ENST00000510377 C11orf95C9JLR9 678 aaPredicted RBP19.69■□□□□ 0.74
USP38-202ENST00000510377 CFTRP13569 1480 aa19.69■□□□□ 0.74
USP38-202ENST00000510377 ZNF644Q9H582 1327 aaPredicted RBP19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms