RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 LRRC9Q6ZRR7 1453 aa13.57□□□□□ -0.24
PDGFRA-208ENST00000509490 DNMBPQ6XZF7 1577 aa13.56□□□□□ -0.24
PDGFRA-208ENST00000509490 CUL7Q14999 1698 aa13.56□□□□□ -0.24
PDGFRA-208ENST00000509490 ABCA10Q8WWZ4 1543 aa13.56□□□□□ -0.24
PDGFRA-208ENST00000509490 MAPKBP1O60336 1514 aa13.55□□□□□ -0.24
PDGFRA-208ENST00000509490 CARMIL1Q5VZK9 1371 aa13.55□□□□□ -0.24
PDGFRA-208ENST00000509490 FYCO1Q9BQS8 1478 aa13.52□□□□□ -0.24
PDGFRA-208ENST00000509490 WDR97A6NE52 1622 aa13.51□□□□□ -0.25
PDGFRA-208ENST00000509490 PCF11O94913 1555 aaKnown RBP13.5□□□□□ -0.25
PDGFRA-208ENST00000509490 CTTNBP2Q8WZ74 1663 aa13.5□□□□□ -0.25
PDGFRA-208ENST00000509490 SETD5Q9C0A6 1442 aa13.48□□□□□ -0.25
PDGFRA-208ENST00000509490 TIMELESSQ9UNS1 1208 aa13.48□□□□□ -0.25
PDGFRA-208ENST00000509490 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
PDGFRA-208ENST00000509490 CASKIN1Q8WXD9 1431 aa13.47□□□□□ -0.25
PDGFRA-208ENST00000509490 MYT1Q01538 1121 aa13.47□□□□□ -0.25
PDGFRA-208ENST00000509490 RAB3GAP2Q9H2M9 1393 aa13.46□□□□□ -0.25
PDGFRA-208ENST00000509490 THOC2Q8NI27 1593 aaKnown RBP13.45□□□□□ -0.26
PDGFRA-208ENST00000509490 TOPBP1Q92547 1522 aa13.45□□□□□ -0.26
PDGFRA-208ENST00000509490 SAMD9Q5K651 1589 aa13.44□□□□□ -0.26
PDGFRA-208ENST00000509490 PHLDB1Q86UU1 1377 aa13.43□□□□□ -0.26
PDGFRA-208ENST00000509490 POLA1P09884 1462 aaPredicted RBP13.43□□□□□ -0.26
PDGFRA-208ENST00000509490 KIF21AQ7Z4S6 1674 aa13.42□□□□□ -0.26
PDGFRA-208ENST00000509490 LAMC3Q9Y6N6 1575 aa13.42□□□□□ -0.26
PDGFRA-208ENST00000509490 ABCA5Q8WWZ7 1642 aa13.41□□□□□ -0.26
PDGFRA-208ENST00000509490 SNAPC4Q5SXM2 1469 aa13.4□□□□□ -0.26
PDGFRA-208ENST00000509490 FMN1Q68DA7 1419 aa13.38□□□□□ -0.27
PDGFRA-208ENST00000509490 RANGAP1P46060 587 aaPredicted RBP13.38□□□□□ -0.27
PDGFRA-208ENST00000509490 ARHGEF11O15085 1522 aa13.34□□□□□ -0.27
PDGFRA-208ENST00000509490 YTHDC1Q96MU7 727 aaKnown RBP13.33□□□□□ -0.28
PDGFRA-208ENST00000509490 GRIN2BQ13224 1484 aa13.33□□□□□ -0.28
PDGFRA-208ENST00000509490 RAD54L2Q9Y4B4 1467 aa13.33□□□□□ -0.28
PDGFRA-208ENST00000509490 FGD6Q6ZV73 1430 aa13.32□□□□□ -0.28
PDGFRA-208ENST00000509490 LRRIQ1Q96JM4 1722 aa13.32□□□□□ -0.28
PDGFRA-208ENST00000509490 HFM1A2PYH4 1435 aa13.31□□□□□ -0.28
PDGFRA-208ENST00000509490 FHOD3Q2V2M9 1422 aa13.31□□□□□ -0.28
PDGFRA-208ENST00000509490 URB2Q14146 1524 aaKnown RBP13.3□□□□□ -0.28
PDGFRA-208ENST00000509490 EHBP1L1Q8N3D4 1523 aa13.3□□□□□ -0.28
PDGFRA-208ENST00000509490 PTPN23Q9H3S7 1636 aa13.29□□□□□ -0.28
PDGFRA-208ENST00000509490 AKNAQ7Z591 1439 aa13.28□□□□□ -0.28
PDGFRA-208ENST00000509490 SUPT6HQ7KZ85 1726 aaKnown RBP13.28□□□□□ -0.28
PDGFRA-208ENST00000509490 TCOF1Q13428 1488 aaKnown RBP13.27□□□□□ -0.28
PDGFRA-208ENST00000509490 SENP3Q9H4L4 574 aaPredicted RBP13.27□□□□□ -0.28
PDGFRA-208ENST00000509490 UACAQ9BZF9 1416 aa13.27□□□□□ -0.28
PDGFRA-208ENST00000509490 UGGT2Q9NYU1 1516 aa13.26□□□□□ -0.29
PDGFRA-208ENST00000509490 TARBP1Q13395 1621 aaKnown RBP13.25□□□□□ -0.29
PDGFRA-208ENST00000509490 CCDC18Q5T9S5 1454 aa13.25□□□□□ -0.29
PDGFRA-208ENST00000509490 GCC2Q8IWJ2 1684 aa13.25□□□□□ -0.29
PDGFRA-208ENST00000509490 MYOM3Q5VTT5 1437 aa13.24□□□□□ -0.29
PDGFRA-208ENST00000509490 PPP1R15AO75807 674 aaPredicted RBP13.24□□□□□ -0.29
PDGFRA-208ENST00000509490 SUPT16HQ9Y5B9 1047 aaKnown RBP13.23□□□□□ -0.29
PDGFRA-208ENST00000509490 GAPVD1Q14C86 1478 aa13.23□□□□□ -0.29
PDGFRA-208ENST00000509490 KDM5BQ9UGL1 1544 aa13.23□□□□□ -0.29
PDGFRA-208ENST00000509490 NESP48681 1621 aa13.22□□□□□ -0.29
PDGFRA-208ENST00000509490 CCER2I3L3R5 266 aa13.22□□□□□ -0.29
PDGFRA-208ENST00000509490 HECW1Q76N89 1606 aa13.22□□□□□ -0.29
PDGFRA-208ENST00000509490 NCOA2Q15596 1464 aa13.22□□□□□ -0.29
PDGFRA-208ENST00000509490 NAIPQ13075 1403 aa13.21□□□□□ -0.29
PDGFRA-208ENST00000509490 PDS5BQ9NTI5 1447 aa13.21□□□□□ -0.3
PDGFRA-208ENST00000509490 PTPRKQ15262 1439 aa13.2□□□□□ -0.3
PDGFRA-208ENST00000509490 PBRM1Q86U86 1689 aa13.18□□□□□ -0.3
PDGFRA-208ENST00000509490 FAM50AQ14320 339 aaKnown RBP13.17□□□□□ -0.3
PDGFRA-208ENST00000509490 MIA2Q96PC5 1412 aa13.16□□□□□ -0.3
PDGFRA-208ENST00000509490 MTUS2Q5JR59 1369 aa13.16□□□□□ -0.3
PDGFRA-208ENST00000509490 ITGAEP38570 1179 aa13.16□□□□□ -0.3
PDGFRA-208ENST00000509490 ADAMTS12P58397 1594 aa13.15□□□□□ -0.3
PDGFRA-208ENST00000509490 MAGI3Q5TCQ9 1506 aa13.15□□□□□ -0.3
PDGFRA-208ENST00000509490 SIN3AQ96ST3 1273 aa13.14□□□□□ -0.31
PDGFRA-208ENST00000509490 IQGAP2Q13576 1575 aa13.13□□□□□ -0.31
PDGFRA-208ENST00000509490 WDR62O43379 1518 aa13.13□□□□□ -0.31
PDGFRA-208ENST00000509490 DENND4BO75064 1496 aaPredicted RBP13.11□□□□□ -0.31
PDGFRA-208ENST00000509490 TONSLQ96HA7 1378 aa13.09□□□□□ -0.31
PDGFRA-208ENST00000509490 EPRSP07814 1512 aaKnown RBP13.09□□□□□ -0.31
PDGFRA-208ENST00000509490 P3H3Q8IVL6 736 aa13.09□□□□□ -0.31
PDGFRA-208ENST00000509490 ROCK1Q13464 1354 aa13.08□□□□□ -0.32
PDGFRA-208ENST00000509490 TDRD9Q8NDG6 1382 aaKnown RBP13.08□□□□□ -0.32
PDGFRA-208ENST00000509490 POLR1AO95602 1720 aaPredicted RBP13.05□□□□□ -0.32
PDGFRA-208ENST00000509490 DDX10Q13206 875 aaKnown RBP13.05□□□□□ -0.32
PDGFRA-208ENST00000509490 DNMT1P26358 1616 aaKnown RBP13.05□□□□□ -0.32
PDGFRA-208ENST00000509490 KCNH8Q96L42 1107 aa13.04□□□□□ -0.32
PDGFRA-208ENST00000509490 TSHZ2Q9NRE2 1034 aa13.03□□□□□ -0.32
PDGFRA-208ENST00000509490 MRC2Q9UBG0 1479 aa13.03□□□□□ -0.32
PDGFRA-208ENST00000509490 ANP32CO43423 234 aa13.02□□□□□ -0.32
PDGFRA-208ENST00000509490 KIAA0556O60303 1618 aa13.01□□□□□ -0.33
PDGFRA-208ENST00000509490 KDM6BO15054 1643 aa13.01□□□□□ -0.33
PDGFRA-208ENST00000509490 IFT140Q96RY7 1462 aa13□□□□□ -0.33
PDGFRA-208ENST00000509490 ADCY10Q96PN6 1610 aa13□□□□□ -0.33
PDGFRA-208ENST00000509490 KIAA0586Q9BVV6 1533 aa13□□□□□ -0.33
PDGFRA-208ENST00000509490 RPRD2Q5VT52 1461 aaKnown RBP12.98□□□□□ -0.33
PDGFRA-208ENST00000509490 DISP1Q96F81 1524 aa12.98□□□□□ -0.33
PDGFRA-208ENST00000509490 ATP1B4Q9UN42 357 aaPredicted RBP12.98□□□□□ -0.33
PDGFRA-208ENST00000509490 TEX14Q8IWB6 1497 aa12.97□□□□□ -0.33
PDGFRA-208ENST00000509490 RAPGEF6Q8TEU7 1601 aa12.97□□□□□ -0.33
PDGFRA-208ENST00000509490 DAPK1P53355 1430 aa12.96□□□□□ -0.33
PDGFRA-208ENST00000509490 NCOA1Q15788 1441 aa12.96□□□□□ -0.33
PDGFRA-208ENST00000509490 ADGBQ8N7X0 1667 aa12.96□□□□□ -0.33
PDGFRA-208ENST00000509490 CDK13Q14004 1512 aaKnown RBP12.96□□□□□ -0.33
PDGFRA-208ENST00000509490 ITSN2Q9NZM3 1697 aa12.95□□□□□ -0.34
PDGFRA-208ENST00000509490 ADGRL2O95490 1459 aa12.95□□□□□ -0.34
PDGFRA-208ENST00000509490 CNTLNQ9NXG0 1405 aa12.95□□□□□ -0.34
PDGFRA-208ENST00000509490 ANKRD30BQ9BXX2 1392 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms