RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, human

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4-208	ENST00000508342	FAM50A	Q14320	339 aa	Known RBP	4.37	□□□□□ -1.71
NEDD4-208	ENST00000508342	SNAPC4	Q5SXM2	1469 aa		4.36	□□□□□ -1.71
NEDD4-208	ENST00000508342	DNMBP	Q6XZF7	1577 aa		4.36	□□□□□ -1.71
NEDD4-208	ENST00000508342	RSF1	Q96T23	1441 aa	Predicted RBP	4.36	□□□□□ -1.71
NEDD4-208	ENST00000508342	HAP1	P54257	671 aa	Predicted RBP	4.36	□□□□□ -1.71
NEDD4-208	ENST00000508342	CHGA	P10645	457 aa	Known RBP	4.35	□□□□□ -1.71
NEDD4-208	ENST00000508342	TDRD9	Q8NDG6	1382 aa	Known RBP	4.35	□□□□□ -1.71
NEDD4-208	ENST00000508342	AQR	O60306	1485 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
NEDD4-208	ENST00000508342	MEX3C	Q5U5Q3	659 aa	Known RBP	4.34	□□□□□ -1.71
NEDD4-208	ENST00000508342	KIF27	Q86VH2	1401 aa		4.34	□□□□□ -1.71
NEDD4-208	ENST00000508342	GAPVD1	Q14C86	1478 aa		4.34	□□□□□ -1.72
NEDD4-208	ENST00000508342	PLEKHD1	A6NEE1	506 aa		4.33	□□□□□ -1.72
NEDD4-208	ENST00000508342	TRIM52	Q96A61	297 aa		4.33	□□□□□ -1.72
NEDD4-208	ENST00000508342	CLIP1	P30622	1438 aa		4.33	□□□□□ -1.72
NEDD4-208	ENST00000508342	RAD54L2	Q9Y4B4	1467 aa		4.33	□□□□□ -1.72
NEDD4-208	ENST00000508342	EIF4G3	O43432	1585 aa	Known RBP	4.33	□□□□□ -1.72
NEDD4-208	ENST00000508342	FGD5	Q6ZNL6	1462 aa		4.32	□□□□□ -1.72
NEDD4-208	ENST00000508342	WDR62	O43379	1518 aa		4.32	□□□□□ -1.72
NEDD4-208	ENST00000508342	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	4.32	□□□□□ -1.72	2e-6	■■□□□ 14.1
NEDD4-208	ENST00000508342	THOC2	Q8NI27	1593 aa	Known RBP	4.32	□□□□□ -1.72
NEDD4-208	ENST00000508342	GRIN2B	Q13224	1484 aa		4.32	□□□□□ -1.72
NEDD4-208	ENST00000508342	PPP1R15A	O75807	674 aa	Predicted RBP	4.32	□□□□□ -1.72
NEDD4-208	ENST00000508342	DNAJC5	Q9H3Z4	198 aa		4.32	□□□□□ -1.72
NEDD4-208	ENST00000508342	ZBTB22	O15209	634 aa		4.31	□□□□□ -1.72
NEDD4-208	ENST00000508342	TOPBP1	Q92547	1522 aa		4.31	□□□□□ -1.72
NEDD4-208	ENST00000508342	PLEKHG5	O94827	1062 aa		4.3	□□□□□ -1.72
NEDD4-208	ENST00000508342	ZNF326	Q5BKZ1	582 aa	Known RBP	4.3	□□□□□ -1.72
NEDD4-208	ENST00000508342		A0A0G2JS52	829 aa		4.3	□□□□□ -1.72
NEDD4-208	ENST00000508342	RIMBP3C	A6NJZ7	1639 aa		4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	RIMBP3B	A6NNM3	1639 aa		4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	RIMBP3	Q9UFD9	1639 aa		4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	PPARGC1B	Q86YN6	1023 aa	Known RBP	4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	FBXO3	Q9UK99	471 aa		4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	CUL7	Q14999	1698 aa		4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	GOLGA3	Q08378	1498 aa		4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	ZBTB7C	A1YPR0	619 aa		4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	CTTNBP2	Q8WZ74	1663 aa		4.29	□□□□□ -1.72
NEDD4-208	ENST00000508342	FOXD1	Q16676	465 aa		4.28	□□□□□ -1.72
NEDD4-208	ENST00000508342	PRG4	Q92954	1404 aa	Predicted RBP	4.27	□□□□□ -1.73
NEDD4-208	ENST00000508342	POLR3GL	Q9BT43	218 aa		4.27	□□□□□ -1.73
NEDD4-208	ENST00000508342	JPH4	Q96JJ6	628 aa		4.27	□□□□□ -1.73
NEDD4-208	ENST00000508342	SUPT6H	Q7KZ85	1726 aa	Known RBP	4.27	□□□□□ -1.73
NEDD4-208	ENST00000508342	PRKCSH	P14314	528 aa	Predicted RBP	4.27	□□□□□ -1.73
NEDD4-208	ENST00000508342	SYNJ2	O15056	1496 aa		4.27	□□□□□ -1.73
NEDD4-208	ENST00000508342	CARMIL1	Q5VZK9	1371 aa		4.27	□□□□□ -1.73
NEDD4-208	ENST00000508342	HOMEZ	Q8IX15	550 aa		4.26	□□□□□ -1.73
NEDD4-208	ENST00000508342	URB2	Q14146	1524 aa	Known RBP	4.26	□□□□□ -1.73
NEDD4-208	ENST00000508342	TPRN	Q4KMQ1	711 aa		4.26	□□□□□ -1.73
NEDD4-208	ENST00000508342	MAGI1	Q96QZ7	1491 aa	Predicted RBP	4.26	□□□□□ -1.73
NEDD4-208	ENST00000508342	PTPRG	P23470	1445 aa		4.26	□□□□□ -1.73
NEDD4-208	ENST00000508342	CFTR	P13569	1480 aa		4.26	□□□□□ -1.73
NEDD4-208	ENST00000508342	HMGB1	P09429	215 aa	Known RBP	4.25	□□□□□ -1.73
NEDD4-208	ENST00000508342	CCER1	Q8TC90	406 aa	Predicted RBP	4.25	□□□□□ -1.73
NEDD4-208	ENST00000508342	DCAF8L1	A6NGE4	600 aa		4.25	□□□□□ -1.73
NEDD4-208	ENST00000508342	PIP4K2B	P78356	416 aa		4.25	□□□□□ -1.73
NEDD4-208	ENST00000508342	KANK1	Q14678	1352 aa		4.24	□□□□□ -1.73
NEDD4-208	ENST00000508342	FHAD1	B1AJZ9	1412 aa		4.24	□□□□□ -1.73
NEDD4-208	ENST00000508342	FKBP8	Q14318	412 aa		4.24	□□□□□ -1.73
NEDD4-208	ENST00000508342	PEG3	Q9GZU2	1588 aa		4.24	□□□□□ -1.73
NEDD4-208	ENST00000508342	TSPY4	P0CV99	314 aa		4.24	□□□□□ -1.73
NEDD4-208	ENST00000508342	TSPY10	P0CW01	314 aa		4.24	□□□□□ -1.73
NEDD4-208	ENST00000508342	MTUS2	Q5JR59	1369 aa		4.23	□□□□□ -1.73
NEDD4-208	ENST00000508342	CFAP74	Q9C0B2	1584 aa		4.23	□□□□□ -1.73
NEDD4-208	ENST00000508342	WDR97	A6NE52	1622 aa		4.23	□□□□□ -1.73
NEDD4-208	ENST00000508342	POGZ	Q7Z3K3	1410 aa		4.23	□□□□□ -1.73
NEDD4-208	ENST00000508342	ARHGAP5	Q13017	1502 aa		4.23	□□□□□ -1.73
NEDD4-208	ENST00000508342	HDGF	P51858	240 aa	Known RBP	4.23	□□□□□ -1.73
NEDD4-208	ENST00000508342	POLA1	P09884	1462 aa	Predicted RBP	4.23	□□□□□ -1.73
NEDD4-208	ENST00000508342	TNIK	Q9UKE5	1360 aa		4.23	□□□□□ -1.73
NEDD4-208	ENST00000508342	TULP1	O00294	542 aa	Predicted RBP	4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	CCDC9	Q9Y3X0	531 aa	Known RBP	4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	CUX1	P39880	1505 aa		4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	TAOK2	Q9UL54	1235 aa		4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	TEX14	Q8IWB6	1497 aa		4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	KDM6B	O15054	1643 aa		4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	ZNF608	Q9ULD9	1512 aa	Predicted RBP	4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	RAPGEF2	Q9Y4G8	1499 aa		4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	TOP2B	Q02880	1626 aa		4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	EID1	Q9Y6B2	187 aa		4.22	□□□□□ -1.73
NEDD4-208	ENST00000508342	GGT6	Q6P531	493 aa		4.21	□□□□□ -1.74
NEDD4-208	ENST00000508342	IQGAP2	Q13576	1575 aa		4.21	□□□□□ -1.74
NEDD4-208	ENST00000508342	LMOD2	Q6P5Q4	547 aa		4.2	□□□□□ -1.74
NEDD4-208	ENST00000508342	BIVM-ERCC5	R4GMW8	1640 aa		4.2	□□□□□ -1.74
NEDD4-208	ENST00000508342	CFDP1	Q9UEE9	299 aa	Predicted RBP	4.2	□□□□□ -1.74
NEDD4-208	ENST00000508342	GRIN2A	Q12879	1464 aa		4.2	□□□□□ -1.74
NEDD4-208	ENST00000508342	PCGF6	Q9BYE7	350 aa		4.2	□□□□□ -1.74
NEDD4-208	ENST00000508342	CCNB3	Q8WWL7	1395 aa		4.2	□□□□□ -1.74
NEDD4-208	ENST00000508342	ADAMTS12	P58397	1594 aa		4.19	□□□□□ -1.74
NEDD4-208	ENST00000508342	PPP4R3CP	Q6ZMV5	832 aa		4.19	□□□□□ -1.74
NEDD4-208	ENST00000508342	CHIC2	Q9UKJ5	165 aa		4.19	□□□□□ -1.74
NEDD4-208	ENST00000508342	HECW1	Q76N89	1606 aa		4.19	□□□□□ -1.74
NEDD4-208	ENST00000508342	PLCB2	Q00722	1185 aa		4.19	□□□□□ -1.74
NEDD4-208	ENST00000508342	KIF14	Q15058	1648 aa		4.19	□□□□□ -1.74
NEDD4-208	ENST00000508342	ARHGEF11	O15085	1522 aa		4.18	□□□□□ -1.74
NEDD4-208	ENST00000508342	ERICH3	Q5RHP9	1530 aa		4.18	□□□□□ -1.74
NEDD4-208	ENST00000508342	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	4.18	□□□□□ -1.74
NEDD4-208	ENST00000508342	EFCAB2	Q5VUJ9	269 aa		4.18	□□□□□ -1.74
NEDD4-208	ENST00000508342	DMRT2	Q9Y5R5	561 aa		4.17	□□□□□ -1.74
NEDD4-208	ENST00000508342	SF3B2	Q13435	895 aa	Known RBP	4.16	□□□□□ -1.74
NEDD4-208	ENST00000508342	ABCA5	Q8WWZ7	1642 aa		4.16	□□□□□ -1.74

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