RNA–Protein interactions for RNA: ENST00000506233.5

SCLT1-207, Transcript of sodium channel and clathrin linker 1, humanhuman

TSL 2

Gene SCLT1, Length 3,673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-207ENST00000506233 TRIM41Q8WV44 630 aa9.81□□□□□ -0.84
SCLT1-207ENST00000506233 LAMC3Q9Y6N6 1575 aa9.81□□□□□ -0.84
SCLT1-207ENST00000506233 CADPSQ9ULU8 1353 aa9.8□□□□□ -0.84
SCLT1-207ENST00000506233 PAXIP1Q6ZW49 1069 aaPredicted RBP9.79□□□□□ -0.84
SCLT1-207ENST00000506233 HOMEZQ8IX15 550 aa9.79□□□□□ -0.84
SCLT1-207ENST00000506233 ERICH3Q5RHP9 1530 aa9.79□□□□□ -0.84
SCLT1-207ENST00000506233 DNMBPQ6XZF7 1577 aa9.79□□□□□ -0.84
SCLT1-207ENST00000506233 TMEM132AQ24JP5 1023 aa9.78□□□□□ -0.84
SCLT1-207ENST00000506233 TSHZ2Q9NRE2 1034 aa9.78□□□□□ -0.84
SCLT1-207ENST00000506233 CFAP44Q96MT7 982 aa9.77□□□□□ -0.85
SCLT1-207ENST00000506233 TOPBP1Q92547 1522 aa9.75□□□□□ -0.85
SCLT1-207ENST00000506233 FGD5Q6ZNL6 1462 aa9.75□□□□□ -0.85
SCLT1-207ENST00000506233 ARAP1Q96P48 1450 aa9.75□□□□□ -0.85
SCLT1-207ENST00000506233 THOC2Q8NI27 1593 aaKnown RBP9.74□□□□□ -0.85
SCLT1-207ENST00000506233 EEA1Q15075 1411 aa9.74□□□□□ -0.85
SCLT1-207ENST00000506233 TNIKQ9UKE5 1360 aa9.74□□□□□ -0.85
SCLT1-207ENST00000506233 FANCD2Q9BXW9 1451 aa9.74□□□□□ -0.85
SCLT1-207ENST00000506233 POLA1P09884 1462 aaPredicted RBP9.73□□□□□ -0.85
SCLT1-207ENST00000506233 VASPP50552 380 aaPredicted RBP9.73□□□□□ -0.85
SCLT1-207ENST00000506233 ABCA10Q8WWZ4 1543 aa9.72□□□□□ -0.85
SCLT1-207ENST00000506233 CEP162Q5TB80 1403 aa9.72□□□□□ -0.85
SCLT1-207ENST00000506233 CUX2O14529 1486 aa9.7□□□□□ -0.86
SCLT1-207ENST00000506233 PBRM1Q86U86 1689 aa9.7□□□□□ -0.86
SCLT1-207ENST00000506233 RAD54L2Q9Y4B4 1467 aa9.69□□□□□ -0.86
SCLT1-207ENST00000506233 GOLGA3Q08378 1498 aa9.68□□□□□ -0.86
SCLT1-207ENST00000506233 IGF1RP08069 1367 aa9.68□□□□□ -0.86
SCLT1-207ENST00000506233 CTTNBP2Q8WZ74 1663 aa9.68□□□□□ -0.86
SCLT1-207ENST00000506233 CEP164Q9UPV0 1460 aa9.67□□□□□ -0.86
SCLT1-207ENST00000506233 BBXQ8WY36 941 aaPredicted RBP9.67□□□□□ -0.86
SCLT1-207ENST00000506233 WDR62O43379 1518 aa9.66□□□□□ -0.86
SCLT1-207ENST00000506233 SAMD9Q5K651 1589 aa9.65□□□□□ -0.86
SCLT1-207ENST00000506233 ARHGAP35Q9NRY4 1499 aa9.64□□□□□ -0.87
SCLT1-207ENST00000506233 FAM9AQ8IZU1 332 aaPredicted RBP9.63□□□□□ -0.87
SCLT1-207ENST00000506233 FBXO3Q9UK99 471 aa9.63□□□□□ -0.87
SCLT1-207ENST00000506233 C14orf37Q86TY3 774 aa9.62□□□□□ -0.87
SCLT1-207ENST00000506233 PODXL2Q9NZ53 605 aa9.62□□□□□ -0.87
SCLT1-207ENST00000506233 CUL7Q14999 1698 aa9.62□□□□□ -0.87
SCLT1-207ENST00000506233 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.61□□□□□ -0.87
SCLT1-207ENST00000506233 CLIP1P30622 1438 aa9.61□□□□□ -0.87
SCLT1-207ENST00000506233 HOXD11P31277 338 aaPredicted RBP9.6□□□□□ -0.87
SCLT1-207ENST00000506233 CFAP43Q8NDM7 1665 aa9.6□□□□□ -0.87
SCLT1-207ENST00000506233 ADAMTS12P58397 1594 aa9.57□□□□□ -0.88
SCLT1-207ENST00000506233 PROM2Q8N271 834 aa9.56□□□□□ -0.88
SCLT1-207ENST00000506233 SNAPC4Q5SXM2 1469 aa9.55□□□□□ -0.88
SCLT1-207ENST00000506233 DNAJC5Q9H3Z4 198 aa9.54□□□□□ -0.88
SCLT1-207ENST00000506233 RGL2O15211 777 aa9.54□□□□□ -0.88
SCLT1-207ENST00000506233 EIF4G3O43432 1585 aaKnown RBP9.54□□□□□ -0.88
SCLT1-207ENST00000506233 NBR1Q14596 966 aa9.54□□□□□ -0.88
SCLT1-207ENST00000506233 ZNF608Q9ULD9 1512 aaPredicted RBP9.54□□□□□ -0.88
SCLT1-207ENST00000506233 VPS8Q8N3P4 1428 aa9.54□□□□□ -0.88
SCLT1-207ENST00000506233 SPDYE4A6NLX3 237 aa9.53□□□□□ -0.88
SCLT1-207ENST00000506233 PCF11O94913 1555 aaKnown RBP9.53□□□□□ -0.88
SCLT1-207ENST00000506233 KIF27Q86VH2 1401 aa9.52□□□□□ -0.88
SCLT1-207ENST00000506233 KLHL34Q8N239 644 aa9.52□□□□□ -0.88
SCLT1-207ENST00000506233 MAGI3Q5TCQ9 1506 aa9.52□□□□□ -0.89
SCLT1-207ENST00000506233 SPRYD3Q8NCJ5 442 aa9.51□□□□□ -0.89
SCLT1-207ENST00000506233 HRCP23327 699 aa9.5□□□□□ -0.89
SCLT1-207ENST00000506233 PCGF6Q9BYE7 350 aa9.5□□□□□ -0.89
SCLT1-207ENST00000506233 ARHGEF11O15085 1522 aa9.49□□□□□ -0.89
SCLT1-207ENST00000506233 MRC2Q9UBG0 1479 aa9.49□□□□□ -0.89
SCLT1-207ENST00000506233 MAP3K1Q13233 1512 aa9.48□□□□□ -0.89
SCLT1-207ENST00000506233 TIAM1Q13009 1591 aa9.48□□□□□ -0.89
SCLT1-207ENST00000506233 CEP170Q5SW79 1584 aa9.47□□□□□ -0.89
SCLT1-207ENST00000506233 ECM2O94769 699 aaPredicted RBP9.47□□□□□ -0.89
SCLT1-207ENST00000506233 MKRN4PQ13434 485 aaPredicted RBP9.46□□□□□ -0.89
SCLT1-207ENST00000506233 UBTFP17480 764 aaKnown RBP9.46□□□□□ -0.9
SCLT1-207ENST00000506233 TRIM26Q12899 539 aaPredicted RBP9.45□□□□□ -0.9
SCLT1-207ENST00000506233 GRIN2BQ13224 1484 aa9.44□□□□□ -0.9
SCLT1-207ENST00000506233 DISP1Q96F81 1524 aa9.43□□□□□ -0.9
SCLT1-207ENST00000506233 GAPVD1Q14C86 1478 aa9.43□□□□□ -0.9
SCLT1-207ENST00000506233 TRHP20396 242 aaPredicted RBP9.43□□□□□ -0.9
SCLT1-207ENST00000506233 ERICH6Q7L0X2 663 aa9.43□□□□□ -0.9
SCLT1-207ENST00000506233 CARMIL1Q5VZK9 1371 aa9.43□□□□□ -0.9
SCLT1-207ENST00000506233 PPARGC1BQ86YN6 1023 aaKnown RBP9.42□□□□□ -0.9
SCLT1-207ENST00000506233 PDS5BQ9NTI5 1447 aa9.42□□□□□ -0.9
SCLT1-207ENST00000506233 RRBP1Q9P2E9 1410 aaKnown RBP9.42□□□□□ -0.9
SCLT1-207ENST00000506233 AQRO60306 1485 aaKnown RBP eCLIP9.42□□□□□ -0.9
SCLT1-207ENST00000506233 KANK4Q5T7N3 995 aaPredicted RBP9.41□□□□□ -0.9
SCLT1-207ENST00000506233 EFCAB5A4FU69 1503 aa9.41□□□□□ -0.9
SCLT1-207ENST00000506233 UGGT2Q9NYU1 1516 aa9.4□□□□□ -0.91
SCLT1-207ENST00000506233 RANGAP1P46060 587 aaPredicted RBP9.39□□□□□ -0.91
SCLT1-207ENST00000506233 SHROOM2Q13796 1616 aa9.39□□□□□ -0.91
SCLT1-207ENST00000506233 TDRD9Q8NDG6 1382 aaKnown RBP9.39□□□□□ -0.91
SCLT1-207ENST00000506233 DMRT2Q9Y5R5 561 aa9.39□□□□□ -0.91
SCLT1-207ENST00000506233 KIAA0556O60303 1618 aa9.37□□□□□ -0.91
SCLT1-207ENST00000506233 DENND4BO75064 1496 aaPredicted RBP9.37□□□□□ -0.91
SCLT1-207ENST00000506233 IFT140Q96RY7 1462 aa9.36□□□□□ -0.91
SCLT1-207ENST00000506233 LRRC9Q6ZRR7 1453 aa9.36□□□□□ -0.91
SCLT1-207ENST00000506233 CHD1O14646 1710 aa9.35□□□□□ -0.91
SCLT1-207ENST00000506233 IQGAP2Q13576 1575 aa9.34□□□□□ -0.91
SCLT1-207ENST00000506233 CHGAP10645 457 aaKnown RBP9.34□□□□□ -0.91
SCLT1-207ENST00000506233 FYCO1Q9BQS8 1478 aa9.34□□□□□ -0.91
SCLT1-207ENST00000506233 MAPKBP1O60336 1514 aa9.33□□□□□ -0.92
SCLT1-207ENST00000506233 KDM6BO15054 1643 aa9.33□□□□□ -0.92
SCLT1-207ENST00000506233 FHOD3Q2V2M9 1422 aa9.32□□□□□ -0.92
SCLT1-207ENST00000506233 KDM5BQ9UGL1 1544 aa9.32□□□□□ -0.92
SCLT1-207ENST00000506233 CASKIN1Q8WXD9 1431 aa9.32□□□□□ -0.92
SCLT1-207ENST00000506233 PHLDB1Q86UU1 1377 aa9.32□□□□□ -0.92
SCLT1-207ENST00000506233 NUP160Q12769 1436 aa9.32□□□□□ -0.92
SCLT1-207ENST00000506233 PTPRKQ15262 1439 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms