RNA–Protein interactions for RNA: ENST00000504011.5

PDLIM3-204, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 2,819 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-204ENST00000504011 RRBP1Q9P2E9 1410 aaKnown RBP22.5■■□□□ 1.19
PDLIM3-204ENST00000504011 PHLDB1Q86UU1 1377 aa22.5■■□□□ 1.19
PDLIM3-204ENST00000504011 ARID3CA6NKF2 412 aa22.5■■□□□ 1.19
PDLIM3-204ENST00000504011 PDS5BQ9NTI5 1447 aa22.49■■□□□ 1.19
PDLIM3-204ENST00000504011 NEUROD1Q13562 356 aa22.49■■□□□ 1.19
PDLIM3-204ENST00000504011 LAMC3Q9Y6N6 1575 aa22.48■■□□□ 1.19
PDLIM3-204ENST00000504011 TIAM1Q13009 1591 aa22.46■■□□□ 1.19
PDLIM3-204ENST00000504011 MIER1Q8N108 512 aa22.44■■□□□ 1.18
PDLIM3-204ENST00000504011 PCF11O94913 1555 aaKnown RBP22.44■■□□□ 1.18
PDLIM3-204ENST00000504011 LRRC9Q6ZRR7 1453 aa22.44■■□□□ 1.18
PDLIM3-204ENST00000504011 GAPVD1Q14C86 1478 aa22.43■■□□□ 1.18
PDLIM3-204ENST00000504011 KIF21AQ7Z4S6 1674 aa22.43■■□□□ 1.18
PDLIM3-204ENST00000504011 FHAD1B1AJZ9 1412 aa22.41■■□□□ 1.18
PDLIM3-204ENST00000504011 RAB3GAP2Q9H2M9 1393 aa22.4■■□□□ 1.18
PDLIM3-204ENST00000504011 AQRO60306 1485 aaKnown RBP eCLIP22.39■■□□□ 1.17
PDLIM3-204ENST00000504011 ACIN1Q9UKV3 1341 aaKnown RBP22.35■■□□□ 1.17
PDLIM3-204ENST00000504011 SIN3AQ96ST3 1273 aa22.32■■□□□ 1.16
PDLIM3-204ENST00000504011 CUL7Q14999 1698 aa22.3■■□□□ 1.16
PDLIM3-204ENST00000504011 MTUS2Q5JR59 1369 aa22.28■■□□□ 1.16
PDLIM3-204ENST00000504011 ABCA5Q8WWZ7 1642 aa22.26■■□□□ 1.15
PDLIM3-204ENST00000504011 WDR97A6NE52 1622 aa22.26■■□□□ 1.15
PDLIM3-204ENST00000504011 CASKIN1Q8WXD9 1431 aa22.25■■□□□ 1.15
PDLIM3-204ENST00000504011 CTTNBP2Q8WZ74 1663 aa22.25■■□□□ 1.15
PDLIM3-204ENST00000504011 CENPBP07199 599 aaPredicted RBP22.23■■□□□ 1.15
PDLIM3-204ENST00000504011 GTF3C3Q9Y5Q9 886 aa22.23■■□□□ 1.15
PDLIM3-204ENST00000504011 SETD5Q9C0A6 1442 aa22.23■■□□□ 1.15
PDLIM3-204ENST00000504011 FYCO1Q9BQS8 1478 aa22.23■■□□□ 1.15
PDLIM3-204ENST00000504011 FMN1Q68DA7 1419 aa22.22■■□□□ 1.15
PDLIM3-204ENST00000504011 CLSPNQ9HAW4 1339 aa22.21■■□□□ 1.15
PDLIM3-204ENST00000504011 MAP3K1Q13233 1512 aa22.21■■□□□ 1.15
PDLIM3-204ENST00000504011 EFCAB5A4FU69 1503 aa22.2■■□□□ 1.14
PDLIM3-204ENST00000504011 ZNF608Q9ULD9 1512 aaPredicted RBP22.2■■□□□ 1.14
PDLIM3-204ENST00000504011 FBLN2P98095 1184 aa22.2■■□□□ 1.14
PDLIM3-204ENST00000504011 TARBP1Q13395 1621 aaKnown RBP22.19■■□□□ 1.14
PDLIM3-204ENST00000504011 HIRIP3Q9BW71 556 aaPredicted RBP22.18■■□□□ 1.14
PDLIM3-204ENST00000504011 CHIC2Q9UKJ5 165 aa22.18■■□□□ 1.14
PDLIM3-204ENST00000504011 CFAP43Q8NDM7 1665 aa22.17■■□□□ 1.14
PDLIM3-204ENST00000504011 SNAPC4Q5SXM2 1469 aa22.17■■□□□ 1.14
PDLIM3-204ENST00000504011 MRC2Q9UBG0 1479 aa22.13■■□□□ 1.13
PDLIM3-204ENST00000504011 MAPKBP1O60336 1514 aa22.13■■□□□ 1.13
PDLIM3-204ENST00000504011 RRP7BPQ9NSQ0 103 aa22.1■■□□□ 1.13
PDLIM3-204ENST00000504011 FGD6Q6ZV73 1430 aa22.1■■□□□ 1.13
PDLIM3-204ENST00000504011 PTPRKQ15262 1439 aa22.08■■□□□ 1.13
PDLIM3-204ENST00000504011 LRRIQ1Q96JM4 1722 aa22.07■■□□□ 1.12
PDLIM3-204ENST00000504011 ERCC6Q03468 1493 aa22.07■■□□□ 1.12
PDLIM3-204ENST00000504011 SAMD9Q5K651 1589 aa22.06■■□□□ 1.12
PDLIM3-204ENST00000504011 NCOA2Q15596 1464 aa22.06■■□□□ 1.12
PDLIM3-204ENST00000504011 PBRM1Q86U86 1689 aa22.04■■□□□ 1.12
PDLIM3-204ENST00000504011 GRIN2BQ13224 1484 aa22.04■■□□□ 1.12
PDLIM3-204ENST00000504011 CDK13Q14004 1512 aaKnown RBP22.01■■□□□ 1.11
PDLIM3-204ENST00000504011 MAGI3Q5TCQ9 1506 aa22.01■■□□□ 1.11
PDLIM3-204ENST00000504011 CHMP7Q8WUX9 453 aaPredicted RBP22■■□□□ 1.11
PDLIM3-204ENST00000504011 IQGAP2Q13576 1575 aa21.98■■□□□ 1.11
PDLIM3-204ENST00000504011 ADAMTS12P58397 1594 aa21.97■■□□□ 1.11
PDLIM3-204ENST00000504011 MYOM3Q5VTT5 1437 aa21.97■■□□□ 1.11
PDLIM3-204ENST00000504011 TRIM52Q96A61 297 aa21.96■■□□□ 1.11
PDLIM3-204ENST00000504011 KCNH8Q96L42 1107 aa21.96■■□□□ 1.11
PDLIM3-204ENST00000504011 DDX10Q13206 875 aaKnown RBP21.96■■□□□ 1.11
PDLIM3-204ENST00000504011 CCDC18Q5T9S5 1454 aa21.93■■□□□ 1.1
PDLIM3-204ENST00000504011 IFT140Q96RY7 1462 aa21.93■■□□□ 1.1
PDLIM3-204ENST00000504011 ZNF644Q9H582 1327 aaPredicted RBP21.92■■□□□ 1.1
PDLIM3-204ENST00000504011 FOXD1Q16676 465 aa21.91■■□□□ 1.1
PDLIM3-204ENST00000504011 EPRSP07814 1512 aaKnown RBP21.9■■□□□ 1.1
PDLIM3-204ENST00000504011 SUPT6HQ7KZ85 1726 aaKnown RBP21.87■■□□□ 1.09
PDLIM3-204ENST00000504011 WDR62O43379 1518 aa21.86■■□□□ 1.09
PDLIM3-204ENST00000504011 NAIPQ13075 1403 aa21.86■■□□□ 1.09
PDLIM3-204ENST00000504011 THOC2Q8NI27 1593 aaKnown RBP21.86■■□□□ 1.09
PDLIM3-204ENST00000504011 EHBP1L1Q8N3D4 1523 aa21.86■■□□□ 1.09
PDLIM3-204ENST00000504011 ZNF777Q9ULD5 760 aaPredicted RBP21.86■■□□□ 1.09
PDLIM3-204ENST00000504011 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.85■■□□□ 1.09
PDLIM3-204ENST00000504011 PPP1R15AO75807 674 aaPredicted RBP21.85■■□□□ 1.09
PDLIM3-204ENST00000504011 TONSLQ96HA7 1378 aa21.85■■□□□ 1.09
PDLIM3-204ENST00000504011 EIF4G3O43432 1585 aaKnown RBP21.84■■□□□ 1.09
PDLIM3-204ENST00000504011 HFM1A2PYH4 1435 aa21.84■■□□□ 1.09
PDLIM3-204ENST00000504011 PTPN23Q9H3S7 1636 aa21.83■■□□□ 1.09
PDLIM3-204ENST00000504011 UGGT2Q9NYU1 1516 aa21.83■■□□□ 1.09
PDLIM3-204ENST00000504011 GRIN2AQ12879 1464 aa21.82■■□□□ 1.08
PDLIM3-204ENST00000504011 HECW1Q76N89 1606 aa21.81■■□□□ 1.08
PDLIM3-204ENST00000504011 DISP1Q96F81 1524 aa21.81■■□□□ 1.08
PDLIM3-204ENST00000504011 KIAA0586Q9BVV6 1533 aa21.79■■□□□ 1.08
PDLIM3-204ENST00000504011 JPH4Q96JJ6 628 aa21.78■■□□□ 1.08
PDLIM3-204ENST00000504011 UACAQ9BZF9 1416 aa21.77■■□□□ 1.08
PDLIM3-204ENST00000504011 PLB1Q6P1J6 1458 aa21.76■■□□□ 1.07
PDLIM3-204ENST00000504011 PRG4Q92954 1404 aaPredicted RBP21.75■■□□□ 1.07
PDLIM3-204ENST00000504011 NUP153P49790 1475 aaKnown RBP21.74■■□□□ 1.07
PDLIM3-204ENST00000504011 KDM6BO15054 1643 aa21.73■■□□□ 1.07
PDLIM3-204ENST00000504011 KIAA0556O60303 1618 aa21.73■■□□□ 1.07
PDLIM3-204ENST00000504011 ARHGEF11O15085 1522 aa21.72■■□□□ 1.07
PDLIM3-204ENST00000504011 MPHOSPH9Q99550 1183 aa21.7■■□□□ 1.06
PDLIM3-204ENST00000504011 CDK11AQ9UQ88 783 aaPredicted RBP21.7■■□□□ 1.06
PDLIM3-204ENST00000504011 CFDP1Q9UEE9 299 aaPredicted RBP21.69■■□□□ 1.06
PDLIM3-204ENST00000504011 CEP170Q5SW79 1584 aa21.69■■□□□ 1.06
PDLIM3-204ENST00000504011 SYNJ2O15056 1496 aa21.65■■□□□ 1.06
PDLIM3-204ENST00000504011 TIMELESSQ9UNS1 1208 aa21.65■■□□□ 1.06
PDLIM3-204ENST00000504011 TCOF1Q13428 1488 aaKnown RBP21.62■■□□□ 1.05
PDLIM3-204ENST00000504011 RAPGEF6Q8TEU7 1601 aa21.62■■□□□ 1.05
PDLIM3-204ENST00000504011 MAGI1Q96QZ7 1491 aaPredicted RBP21.62■■□□□ 1.05
PDLIM3-204ENST00000504011 SLC4A1APQ9BWU0 796 aaKnown RBP21.61■■□□□ 1.05
PDLIM3-204ENST00000504011 DENND4BO75064 1496 aaPredicted RBP21.61■■□□□ 1.05
PDLIM3-204ENST00000504011 MIA2Q96PC5 1412 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms