RNA–Protein interactions for RNA: ENST00000503923.1

VCAN-205, Transcript of versican, humanhuman

TSL 4

Gene VCAN, Length 498 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-205ENST00000503923 RIMBP3CA6NJZ7 1639 aa18.4■□□□□ 0.54
VCAN-205ENST00000503923 RIMBP3BA6NNM3 1639 aa18.4■□□□□ 0.54
VCAN-205ENST00000503923 RIMBP3Q9UFD9 1639 aa18.4■□□□□ 0.54
VCAN-205ENST00000503923 SHROOM2Q13796 1616 aa18.39■□□□□ 0.53
VCAN-205ENST00000503923 KIF21BO75037 1637 aa18.38■□□□□ 0.53
VCAN-205ENST00000503923 JPH4Q96JJ6 628 aa18.37■□□□□ 0.53
VCAN-205ENST00000503923 IQGAP2Q13576 1575 aa18.35■□□□□ 0.53
VCAN-205ENST00000503923 CTTNBP2Q8WZ74 1663 aa18.34■□□□□ 0.53
VCAN-205ENST00000503923 PRG4Q92954 1404 aaPredicted RBP18.32■□□□□ 0.52
VCAN-205ENST00000503923 ERCC6L2Q5T890 1561 aa18.3■□□□□ 0.52
VCAN-205ENST00000503923 GOLGA3Q08378 1498 aa18.29■□□□□ 0.52
VCAN-205ENST00000503923 ARAP1Q96P48 1450 aa18.27■□□□□ 0.52
VCAN-205ENST00000503923 UGGT2Q9NYU1 1516 aa18.26■□□□□ 0.51
VCAN-205ENST00000503923 CARMIL2Q6F5E8 1435 aa18.24■□□□□ 0.51
VCAN-205ENST00000503923 CYB5RLQ6IPT4 315 aa18.24■□□□□ 0.51
VCAN-205ENST00000503923 EHMT2Q96KQ7 1210 aa18.23■□□□□ 0.51
VCAN-205ENST00000503923 UBTFP17480 764 aaKnown RBP18.22■□□□□ 0.51
VCAN-205ENST00000503923 DISP1Q96F81 1524 aa18.2■□□□□ 0.5
VCAN-205ENST00000503923 KIAA0556O60303 1618 aa18.17■□□□□ 0.5
VCAN-205ENST00000503923 TNIKQ9UKE5 1360 aa18.17■□□□□ 0.5
VCAN-205ENST00000503923 PTPRGP23470 1445 aa18.14■□□□□ 0.49
VCAN-205ENST00000503923 SAMD9Q5K651 1589 aa18.11■□□□□ 0.49
VCAN-205ENST00000503923 RANGAP1P46060 587 aaPredicted RBP18.1■□□□□ 0.49
VCAN-205ENST00000503923 EFCAB5A4FU69 1503 aa18.08■□□□□ 0.49
VCAN-205ENST00000503923 TTBK1Q5TCY1 1321 aaPredicted RBP18.08■□□□□ 0.49
VCAN-205ENST00000503923 P3H3Q8IVL6 736 aa18.06■□□□□ 0.48
VCAN-205ENST00000503923 UACAQ9BZF9 1416 aa18.02■□□□□ 0.48
VCAN-205ENST00000503923 FHOD3Q2V2M9 1422 aa18.01■□□□□ 0.47
VCAN-205ENST00000503923 ADCY10Q96PN6 1610 aa18.01■□□□□ 0.47
VCAN-205ENST00000503923 LOC105371045A0A1W2PR82 267 aa18■□□□□ 0.47
VCAN-205ENST00000503923 UHRF1BP1LA0JNW5 1464 aa18■□□□□ 0.47
VCAN-205ENST00000503923 ARHGAP35Q9NRY4 1499 aa18■□□□□ 0.47
VCAN-205ENST00000503923 ABCC2Q92887 1545 aa17.98■□□□□ 0.47
VCAN-205ENST00000503923 PLB1Q6P1J6 1458 aa17.97■□□□□ 0.47
VCAN-205ENST00000503923 NPM1P06748 294 aaKnown RBP eCLIP17.97■□□□□ 0.47
VCAN-205ENST00000503923 ABCA8O94911 1581 aa17.96■□□□□ 0.47
VCAN-205ENST00000503923 CLIP1P30622 1438 aa17.96■□□□□ 0.47
VCAN-205ENST00000503923 RAPGEF6Q8TEU7 1601 aa17.91■□□□□ 0.46
VCAN-205ENST00000503923 CEP162Q5TB80 1403 aa17.91■□□□□ 0.46
VCAN-205ENST00000503923 FMN1Q68DA7 1419 aa17.91■□□□□ 0.46
VCAN-205ENST00000503923 KDM5BQ9UGL1 1544 aa17.9■□□□□ 0.46
VCAN-205ENST00000503923 MAPKBP1O60336 1514 aa17.88■□□□□ 0.45
VCAN-205ENST00000503923 ZCCHC11Q5TAX3 1644 aaKnown RBP17.86■□□□□ 0.45
VCAN-205ENST00000503923 NUP153P49790 1475 aaKnown RBP17.83■□□□□ 0.45
VCAN-205ENST00000503923 ATP10BO94823 1461 aa17.82■□□□□ 0.44
VCAN-205ENST00000503923 TRHP20396 242 aaPredicted RBP17.81■□□□□ 0.44
VCAN-205ENST00000503923 ASXL2Q76L83 1435 aa17.81■□□□□ 0.44
VCAN-205ENST00000503923 HECW1Q76N89 1606 aa17.8■□□□□ 0.44
VCAN-205ENST00000503923 ARID3CA6NKF2 412 aa17.8■□□□□ 0.44
VCAN-205ENST00000503923 ATP1B4Q9UN42 357 aaPredicted RBP17.78■□□□□ 0.44
VCAN-205ENST00000503923 CASKIN1Q8WXD9 1431 aa17.78■□□□□ 0.44
VCAN-205ENST00000503923 ABCC10Q5T3U5 1492 aa17.77■□□□□ 0.44
VCAN-205ENST00000503923 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.77■□□□□ 0.44
VCAN-205ENST00000503923 HNRNPUL2Q1KMD3 747 aaKnown RBP17.77■□□□□ 0.44
VCAN-205ENST00000503923 PCF11O94913 1555 aaKnown RBP17.77■□□□□ 0.44
VCAN-205ENST00000503923 WDR7Q9Y4E6 1490 aa17.75■□□□□ 0.43
VCAN-205ENST00000503923 FYCO1Q9BQS8 1478 aa17.75■□□□□ 0.43
VCAN-205ENST00000503923 EPRSP07814 1512 aaKnown RBP17.74■□□□□ 0.43
VCAN-205ENST00000503923 DIP2BQ9P265 1576 aa17.74■□□□□ 0.43
VCAN-205ENST00000503923 KIF13AQ9H1H9 1805 aa17.73■□□□□ 0.43
VCAN-205ENST00000503923 FAM69CQ0P6D2 419 aa17.73■□□□□ 0.43
VCAN-205ENST00000503923 CDK13Q14004 1512 aaKnown RBP17.72■□□□□ 0.43
VCAN-205ENST00000503923 CCDC18Q5T9S5 1454 aa17.7■□□□□ 0.42
VCAN-205ENST00000503923 PLEKHD1A6NEE1 506 aa17.7■□□□□ 0.42
VCAN-205ENST00000503923 VPS8Q8N3P4 1428 aa17.7■□□□□ 0.42
VCAN-205ENST00000503923 GLI2P10070 1586 aa17.7■□□□□ 0.42
VCAN-205ENST00000503923 LRRIQ1Q96JM4 1722 aa17.69■□□□□ 0.42
VCAN-205ENST00000503923 CDK11AQ9UQ88 783 aaPredicted RBP17.68■□□□□ 0.42
VCAN-205ENST00000503923 KCNH8Q96L42 1107 aa17.67■□□□□ 0.42
VCAN-205ENST00000503923 MAP3K4Q9Y6R4 1608 aa17.61■□□□□ 0.41
VCAN-205ENST00000503923 TROQ12816 1431 aaPredicted RBP17.6■□□□□ 0.41
VCAN-205ENST00000503923 CFAP43Q8NDM7 1665 aa17.6■□□□□ 0.41
VCAN-205ENST00000503923 ABCA9Q8IUA7 1624 aa17.59■□□□□ 0.41
VCAN-205ENST00000503923 TSPOAP1O95153 1857 aa17.58■□□□□ 0.41
VCAN-205ENST00000503923 CD109Q6YHK3 1445 aa17.57■□□□□ 0.4
VCAN-205ENST00000503923 KIF14Q15058 1648 aa17.56■□□□□ 0.4
VCAN-205ENST00000503923 MAGI3Q5TCQ9 1506 aa17.56■□□□□ 0.4
VCAN-205ENST00000503923 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.55■□□□□ 0.4
VCAN-205ENST00000503923 TIAM1Q13009 1591 aa17.54■□□□□ 0.4
VCAN-205ENST00000503923 TEX14Q8IWB6 1497 aa17.54■□□□□ 0.4
VCAN-205ENST00000503923 PPRC1Q5VV67 1664 aaKnown RBP17.54■□□□□ 0.4
VCAN-205ENST00000503923 MTUS2Q5JR59 1369 aa17.53■□□□□ 0.4
VCAN-205ENST00000503923 MAP3K1Q13233 1512 aa17.53■□□□□ 0.4
VCAN-205ENST00000503923 TTC37Q6PGP7 1564 aa17.52■□□□□ 0.39
VCAN-205ENST00000503923 EHBP1L1Q8N3D4 1523 aa17.52■□□□□ 0.39
VCAN-205ENST00000503923 APLP2Q06481 763 aa17.51■□□□□ 0.39
VCAN-205ENST00000503923 LRRC9Q6ZRR7 1453 aa17.46■□□□□ 0.39
VCAN-205ENST00000503923 MYO5CQ9NQX4 1742 aa17.46■□□□□ 0.39
VCAN-205ENST00000503923 PLCH2O75038 1416 aa17.46■□□□□ 0.39
VCAN-205ENST00000503923 ARAP3Q8WWN8 1544 aa17.44■□□□□ 0.38
VCAN-205ENST00000503923 NEO1Q92859 1461 aa17.44■□□□□ 0.38
VCAN-205ENST00000503923 PHLDB1Q86UU1 1377 aa17.43■□□□□ 0.38
VCAN-205ENST00000503923 CFAP74Q9C0B2 1584 aa17.43■□□□□ 0.38
VCAN-205ENST00000503923 SUPT6HQ7KZ85 1726 aaKnown RBP17.43■□□□□ 0.38
VCAN-205ENST00000503923 KANK4Q5T7N3 995 aaPredicted RBP17.42■□□□□ 0.38
VCAN-205ENST00000503923 KDM6BO15054 1643 aa17.42■□□□□ 0.38
VCAN-205ENST00000503923 FANCAO15360 1455 aa17.42■□□□□ 0.38
VCAN-205ENST00000503923 CDC42BPAQ5VT25 1732 aa17.4■□□□□ 0.38
VCAN-205ENST00000503923 ARHGAP5Q13017 1502 aa17.4■□□□□ 0.38
VCAN-205ENST00000503923 CCNB3Q8WWL7 1395 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms