RNA–Protein interactions for RNA: ENST00000502818.5

CPNE4-202, Transcript of copine 4, humanhuman

TSL 5 BASIC

Gene CPNE4, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-202ENST00000502818 ERICH3Q5RHP9 1530 aa11.63□□□□□ -0.55
CPNE4-202ENST00000502818 ABCA5Q8WWZ7 1642 aa11.63□□□□□ -0.55
CPNE4-202ENST00000502818 CLIP1P30622 1438 aa11.6□□□□□ -0.55
CPNE4-202ENST00000502818 IFT140Q96RY7 1462 aa11.59□□□□□ -0.55
CPNE4-202ENST00000502818 PCGF6Q9BYE7 350 aa11.54□□□□□ -0.56
CPNE4-202ENST00000502818 TTBK1Q5TCY1 1321 aaPredicted RBP11.54□□□□□ -0.56
CPNE4-202ENST00000502818 DMRT2Q9Y5R5 561 aa11.53□□□□□ -0.56
CPNE4-202ENST00000502818 ARAP1Q96P48 1450 aa11.52□□□□□ -0.57
CPNE4-202ENST00000502818 CUL7Q14999 1698 aa11.52□□□□□ -0.57
CPNE4-202ENST00000502818 GRIN2BQ13224 1484 aa11.51□□□□□ -0.57
CPNE4-202ENST00000502818 PBRM1Q86U86 1689 aa11.51□□□□□ -0.57
CPNE4-202ENST00000502818 EIF4G3O43432 1585 aaKnown RBP11.51□□□□□ -0.57
CPNE4-202ENST00000502818 ARHGAP35Q9NRY4 1499 aa11.51□□□□□ -0.57
CPNE4-202ENST00000502818 P3H3Q8IVL6 736 aa11.5□□□□□ -0.57
CPNE4-202ENST00000502818 SNAPC4Q5SXM2 1469 aa11.49□□□□□ -0.57
CPNE4-202ENST00000502818 FHAD1B1AJZ9 1412 aa11.48□□□□□ -0.57
CPNE4-202ENST00000502818 ADAMTS12P58397 1594 aa11.48□□□□□ -0.57
CPNE4-202ENST00000502818 VPS8Q8N3P4 1428 aa11.47□□□□□ -0.57
CPNE4-202ENST00000502818 TRIM26Q12899 539 aaPredicted RBP11.44□□□□□ -0.58
CPNE4-202ENST00000502818 FBLN2P98095 1184 aa11.43□□□□□ -0.58
CPNE4-202ENST00000502818 FHOD3Q2V2M9 1422 aa11.42□□□□□ -0.58
CPNE4-202ENST00000502818 CTTNBP2Q8WZ74 1663 aa11.4□□□□□ -0.58
CPNE4-202ENST00000502818 GRIN2AQ12879 1464 aa11.39□□□□□ -0.59
CPNE4-202ENST00000502818 CHMP7Q8WUX9 453 aaPredicted RBP11.39□□□□□ -0.59
CPNE4-202ENST00000502818 KANK4Q5T7N3 995 aaPredicted RBP11.39□□□□□ -0.59
CPNE4-202ENST00000502818 MAGI1Q96QZ7 1491 aaPredicted RBP11.38□□□□□ -0.59
CPNE4-202ENST00000502818 SYNJ2O15056 1496 aa11.37□□□□□ -0.59
CPNE4-202ENST00000502818 CEP170Q5SW79 1584 aa11.36□□□□□ -0.59
CPNE4-202ENST00000502818 ATP1B4Q9UN42 357 aaPredicted RBP11.33□□□□□ -0.6
CPNE4-202ENST00000502818 IQGAP2Q13576 1575 aa11.33□□□□□ -0.6
CPNE4-202ENST00000502818 SAMD9Q5K651 1589 aa11.33□□□□□ -0.6
CPNE4-202ENST00000502818 KIAA0586Q9BVV6 1533 aa11.32□□□□□ -0.6
CPNE4-202ENST00000502818 EFCAB5A4FU69 1503 aa11.32□□□□□ -0.6
CPNE4-202ENST00000502818 APLP2Q06481 763 aa11.32□□□□□ -0.6
CPNE4-202ENST00000502818 PCF11O94913 1555 aaKnown RBP11.31□□□□□ -0.6
CPNE4-202ENST00000502818 NUP160Q12769 1436 aa11.31□□□□□ -0.6
CPNE4-202ENST00000502818 DISP1Q96F81 1524 aa11.29□□□□□ -0.6
CPNE4-202ENST00000502818 UGGT2Q9NYU1 1516 aa11.29□□□□□ -0.6
CPNE4-202ENST00000502818 ARID3CA6NKF2 412 aa11.27□□□□□ -0.6
CPNE4-202ENST00000502818 JPH4Q96JJ6 628 aa11.27□□□□□ -0.61
CPNE4-202ENST00000502818 CASKIN1Q8WXD9 1431 aa11.26□□□□□ -0.61
CPNE4-202ENST00000502818 CHD1O14646 1710 aa11.26□□□□□ -0.61
CPNE4-202ENST00000502818 FMN1Q68DA7 1419 aa11.25□□□□□ -0.61
CPNE4-202ENST00000502818 TIAM1Q13009 1591 aa11.24□□□□□ -0.61
CPNE4-202ENST00000502818 KIAA0556O60303 1618 aa11.24□□□□□ -0.61
CPNE4-202ENST00000502818 FYCO1Q9BQS8 1478 aa11.23□□□□□ -0.61
CPNE4-202ENST00000502818 HRCP23327 699 aa11.23□□□□□ -0.61
CPNE4-202ENST00000502818 LRRIQ1Q96JM4 1722 aa11.22□□□□□ -0.61
CPNE4-202ENST00000502818 LRRC9Q6ZRR7 1453 aa11.21□□□□□ -0.61
CPNE4-202ENST00000502818 HNRNPUL2Q1KMD3 747 aaKnown RBP11.2□□□□□ -0.62
CPNE4-202ENST00000502818 MAP3K1Q13233 1512 aa11.19□□□□□ -0.62
CPNE4-202ENST00000502818 PHLDB1Q86UU1 1377 aa11.19□□□□□ -0.62
CPNE4-202ENST00000502818 PRG4Q92954 1404 aaPredicted RBP11.19□□□□□ -0.62
CPNE4-202ENST00000502818 ERCC6L2Q5T890 1561 aa11.19□□□□□ -0.62
CPNE4-202ENST00000502818 PLB1Q6P1J6 1458 aa11.18□□□□□ -0.62
CPNE4-202ENST00000502818 CDK13Q14004 1512 aaKnown RBP11.18□□□□□ -0.62
CPNE4-202ENST00000502818 CFAP43Q8NDM7 1665 aa11.18□□□□□ -0.62
CPNE4-202ENST00000502818 MAGI3Q5TCQ9 1506 aa11.18□□□□□ -0.62
CPNE4-202ENST00000502818 EPRSP07814 1512 aaKnown RBP11.15□□□□□ -0.62
CPNE4-202ENST00000502818 NUP153P49790 1475 aaKnown RBP11.15□□□□□ -0.62
CPNE4-202ENST00000502818 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.14□□□□□ -0.63
CPNE4-202ENST00000502818 CARMIL2Q6F5E8 1435 aa11.14□□□□□ -0.63
CPNE4-202ENST00000502818 LHX8Q68G74 356 aa11.14□□□□□ -0.63
CPNE4-202ENST00000502818 CLASP1Q7Z460 1538 aa11.13□□□□□ -0.63
CPNE4-202ENST00000502818 RRBP1Q9P2E9 1410 aaKnown RBP11.13□□□□□ -0.63
CPNE4-202ENST00000502818 MTUS2Q5JR59 1369 aa11.13□□□□□ -0.63
CPNE4-202ENST00000502818 HECW1Q76N89 1606 aa11.12□□□□□ -0.63
CPNE4-202ENST00000502818 SHROOM2Q13796 1616 aa11.11□□□□□ -0.63
CPNE4-202ENST00000502818 RAPGEF6Q8TEU7 1601 aa11.11□□□□□ -0.63
CPNE4-202ENST00000502818 ITGAEP38570 1179 aa11.11□□□□□ -0.63
CPNE4-202ENST00000502818 CCNB3Q8WWL7 1395 aa11.11□□□□□ -0.63
CPNE4-202ENST00000502818 PTPRGP23470 1445 aa11.1□□□□□ -0.63
CPNE4-202ENST00000502818 DCAF8L1A6NGE4 600 aa11.09□□□□□ -0.63
CPNE4-202ENST00000502818 NCOA2Q15596 1464 aa11.09□□□□□ -0.63
CPNE4-202ENST00000502818 ABCA8O94911 1581 aa11.08□□□□□ -0.64
CPNE4-202ENST00000502818 CCDC18Q5T9S5 1454 aa11.08□□□□□ -0.64
CPNE4-202ENST00000502818 FAM50AQ14320 339 aaKnown RBP11.08□□□□□ -0.64
CPNE4-202ENST00000502818 PELP1Q8IZL8 1130 aaKnown RBP11.08□□□□□ -0.64
CPNE4-202ENST00000502818 ATP10BO94823 1461 aa11.06□□□□□ -0.64
CPNE4-202ENST00000502818 EHBP1L1Q8N3D4 1523 aa11.06□□□□□ -0.64
CPNE4-202ENST00000502818 ARHGEF11O15085 1522 aa11.05□□□□□ -0.64
CPNE4-202ENST00000502818 OSCARQ8IYS5 282 aa11.05□□□□□ -0.64
CPNE4-202ENST00000502818 FGD6Q6ZV73 1430 aa11.04□□□□□ -0.64
CPNE4-202ENST00000502818 UACAQ9BZF9 1416 aa11.03□□□□□ -0.64
CPNE4-202ENST00000502818 MYOM3Q5VTT5 1437 aa11.02□□□□□ -0.65
CPNE4-202ENST00000502818 SUPT6HQ7KZ85 1726 aaKnown RBP11.02□□□□□ -0.65
CPNE4-202ENST00000502818 CCER1Q8TC90 406 aaPredicted RBP11.02□□□□□ -0.65
CPNE4-202ENST00000502818 PTPRKQ15262 1439 aa11.01□□□□□ -0.65
CPNE4-202ENST00000502818 PPP6R1Q9UPN7 881 aa11.01□□□□□ -0.65
CPNE4-202ENST00000502818 ZNF644Q9H582 1327 aaPredicted RBP11□□□□□ -0.65
CPNE4-202ENST00000502818 TROQ12816 1431 aaPredicted RBP11□□□□□ -0.65
CPNE4-202ENST00000502818 KIF14Q15058 1648 aa11□□□□□ -0.65
CPNE4-202ENST00000502818 CDK11AQ9UQ88 783 aaPredicted RBP10.98□□□□□ -0.65
CPNE4-202ENST00000502818 PLEKHD1A6NEE1 506 aa10.97□□□□□ -0.65
CPNE4-202ENST00000502818 ABCC2Q92887 1545 aa10.97□□□□□ -0.65
CPNE4-202ENST00000502818 PCDH10Q9P2E7 1040 aa10.96□□□□□ -0.66
CPNE4-202ENST00000502818 PTPN23Q9H3S7 1636 aa10.95□□□□□ -0.66
CPNE4-202ENST00000502818 CHIC2Q9UKJ5 165 aa10.94□□□□□ -0.66
CPNE4-202ENST00000502818 GPATCH8Q9UKJ3 1502 aaKnown RBP10.94□□□□□ -0.66
CPNE4-202ENST00000502818 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms