RNA–Protein interactions for RNA: ENST00000499786.4

MED28-202, Transcript of mediator complex subunit 28, humanhuman

TSL 2

Gene MED28, Length 606 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-202ENST00000499786 FXR2P51116 673 aaKnown RBP eCLIP11.79□□□□□ -0.52
MED28-202ENST00000499786 BAZ1BQ9UIG0 1483 aaKnown RBP11.77□□□□□ -0.52
MED28-202ENST00000499786 MNX1P50219 401 aaPredicted RBP11.77□□□□□ -0.53
MED28-202ENST00000499786 ATAD2BQ9ULI0 1458 aa11.76□□□□□ -0.53
MED28-202ENST00000499786 HMGXB3Q12766 1538 aa11.72□□□□□ -0.53
MED28-202ENST00000499786 POTEHQ6S545 545 aa11.72□□□□□ -0.53
MED28-202ENST00000499786 PIP4P2Q8N4L2 257 aa11.71□□□□□ -0.53
MED28-202ENST00000499786 RTN4Q9NQC3 1192 aaKnown RBP11.71□□□□□ -0.53
MED28-202ENST00000499786 AMER1Q5JTC6 1135 aaPredicted RBP11.7□□□□□ -0.54
MED28-202ENST00000499786 PLEKHG5O94827 1062 aa11.69□□□□□ -0.54
MED28-202ENST00000499786 KLHL34Q8N239 644 aa11.69□□□□□ -0.54
MED28-202ENST00000499786 SPOCK2Q92563 424 aa11.69□□□□□ -0.54
MED28-202ENST00000499786 CHADLQ6NUI6 762 aa11.68□□□□□ -0.54
MED28-202ENST00000499786 ZBTB47Q9UFB7 747 aaPredicted RBP11.68□□□□□ -0.54
MED28-202ENST00000499786 CCDC88BA6NC98 1476 aa11.68□□□□□ -0.54
MED28-202ENST00000499786 PRKAR2AP13861 404 aaKnown RBP11.66□□□□□ -0.54
MED28-202ENST00000499786 NCAPD3P42695 1498 aa11.65□□□□□ -0.54
MED28-202ENST00000499786 NUBP1P53384 320 aa11.63□□□□□ -0.55
MED28-202ENST00000499786 CC2D2AQ9P2K1 1620 aa11.61□□□□□ -0.55
MED28-202ENST00000499786 FARP1Q9Y4F1 1045 aaPredicted RBP11.61□□□□□ -0.55
MED28-202ENST00000499786 PKD2Q13563 968 aa11.56□□□□□ -0.56
MED28-202ENST00000499786 NPM1P06748 294 aaKnown RBP eCLIP11.54□□□□□ -0.56
MED28-202ENST00000499786 TRIM41Q8WV44 630 aa11.54□□□□□ -0.56
MED28-202ENST00000499786 RASEFQ8IZ41 740 aa11.52□□□□□ -0.57
MED28-202ENST00000499786 PRDM2Q13029 1718 aa11.48□□□□□ -0.57
MED28-202ENST00000499786 ABCC8Q09428 1581 aa11.46□□□□□ -0.57
MED28-202ENST00000499786 GSE1Q14687 1217 aa11.45□□□□□ -0.58
MED28-202ENST00000499786 WRNQ14191 1432 aaPredicted RBP eCLIP11.43□□□□□ -0.58
MED28-202ENST00000499786 DCAF8Q5TAQ9 597 aa11.42□□□□□ -0.58
MED28-202ENST00000499786 FAM212AQ96EL1 285 aa11.42□□□□□ -0.58
MED28-202ENST00000499786 CIZ1Q9ULV3 898 aaPredicted RBP11.42□□□□□ -0.58
MED28-202ENST00000499786 CFTRP13569 1480 aa11.41□□□□□ -0.58
MED28-202ENST00000499786 C19orf67A6NJJ6 358 aa11.38□□□□□ -0.59
MED28-202ENST00000499786 ECM2O94769 699 aaPredicted RBP11.37□□□□□ -0.59
MED28-202ENST00000499786 CHRM1P11229 460 aaPredicted RBP11.37□□□□□ -0.59
MED28-202ENST00000499786 CADPSQ9ULU8 1353 aa11.37□□□□□ -0.59
MED28-202ENST00000499786 CCDC61Q9Y6R9 512 aa11.36□□□□□ -0.59
MED28-202ENST00000499786 SYNJ1O43426 1573 aa11.36□□□□□ -0.59
MED28-202ENST00000499786 TSPYL2Q9H2G4 693 aaPredicted RBP11.35□□□□□ -0.59
MED28-202ENST00000499786 TOP2BQ02880 1626 aa11.34□□□□□ -0.59
MED28-202ENST00000499786 BIVM-ERCC5R4GMW8 1640 aa11.34□□□□□ -0.59
MED28-202ENST00000499786 EEA1Q15075 1411 aa11.34□□□□□ -0.59
MED28-202ENST00000499786 LAMC3Q9Y6N6 1575 aa11.33□□□□□ -0.6
MED28-202ENST00000499786 CD44P16070 742 aaKnown RBP11.32□□□□□ -0.6
MED28-202ENST00000499786 RGL2O15211 777 aa11.31□□□□□ -0.6
MED28-202ENST00000499786 FAM9AQ8IZU1 332 aaPredicted RBP11.3□□□□□ -0.6
MED28-202ENST00000499786 RNF25Q96BH1 459 aaPredicted RBP11.3□□□□□ -0.6
MED28-202ENST00000499786 PYGBP11216 843 aa11.28□□□□□ -0.6
MED28-202ENST00000499786 FANCD2Q9BXW9 1451 aa11.27□□□□□ -0.6
MED28-202ENST00000499786 PAK3O75914 559 aaPredicted RBP11.27□□□□□ -0.61
MED28-202ENST00000499786 CUX1P39880 1505 aa11.26□□□□□ -0.61
MED28-202ENST00000499786 EVX2Q03828 476 aa11.26□□□□□ -0.61
MED28-202ENST00000499786 ZRANB1Q9UGI0 708 aa11.26□□□□□ -0.61
MED28-202ENST00000499786 CEP164Q9UPV0 1460 aa11.25□□□□□ -0.61
MED28-202ENST00000499786 ZNF579Q8NAF0 562 aaKnown RBP11.23□□□□□ -0.61
MED28-202ENST00000499786 KIF12Q96FN5 646 aa11.23□□□□□ -0.61
MED28-202ENST00000499786 PDS5BQ9NTI5 1447 aa11.23□□□□□ -0.61
MED28-202ENST00000499786 HAX1O00165 279 aa11.22□□□□□ -0.61
MED28-202ENST00000499786 NESP48681 1621 aa11.22□□□□□ -0.61
MED28-202ENST00000499786 DNMBPQ6XZF7 1577 aa11.21□□□□□ -0.61
MED28-202ENST00000499786 SOGA1O94964 1423 aa11.21□□□□□ -0.61
MED28-202ENST00000499786 PHF12Q96QT6 1004 aa11.2□□□□□ -0.62
MED28-202ENST00000499786 LOC105371045A0A1W2PR82 267 aa11.19□□□□□ -0.62
MED28-202ENST00000499786 RIOK3O14730 519 aaKnown RBP11.19□□□□□ -0.62
MED28-202ENST00000499786 SGIP1Q9BQI5 828 aa11.19□□□□□ -0.62
MED28-202ENST00000499786 MAP3K13O43283 966 aa11.18□□□□□ -0.62
MED28-202ENST00000499786 KIF21BO75037 1637 aa11.17□□□□□ -0.62
MED28-202ENST00000499786 GOLGA3Q08378 1498 aa11.17□□□□□ -0.62
MED28-202ENST00000499786 KIF21AQ7Z4S6 1674 aa11.17□□□□□ -0.62
MED28-202ENST00000499786 FGD5Q6ZNL6 1462 aa11.16□□□□□ -0.62
MED28-202ENST00000499786 KIF27Q86VH2 1401 aa11.16□□□□□ -0.62
MED28-202ENST00000499786 TOPBP1Q92547 1522 aa11.14□□□□□ -0.63
MED28-202ENST00000499786 ZNF467Q7Z7K2 595 aaPredicted RBP11.13□□□□□ -0.63
MED28-202ENST00000499786 IFNL1Q8IU54 200 aa11.13□□□□□ -0.63
MED28-202ENST00000499786 PCDHB8Q9UN66 801 aa11.13□□□□□ -0.63
MED28-202ENST00000499786 PCDHB13Q9Y5F0 798 aa11.13□□□□□ -0.63
MED28-202ENST00000499786 RUSC2Q8N2Y8 1516 aa11.13□□□□□ -0.63
MED28-202ENST00000499786 VGFO15240 615 aaPredicted RBP11.12□□□□□ -0.63
MED28-202ENST00000499786 CUX2O14529 1486 aa11.1□□□□□ -0.63
MED28-202ENST00000499786 URB2Q14146 1524 aaKnown RBP11.09□□□□□ -0.63
MED28-202ENST00000499786 ERICH3Q5RHP9 1530 aa11.09□□□□□ -0.63
MED28-202ENST00000499786 MRC2Q9UBG0 1479 aa11.09□□□□□ -0.63
MED28-202ENST00000499786 POLA1P09884 1462 aaPredicted RBP11.08□□□□□ -0.64
MED28-202ENST00000499786 MS4A3Q96HJ5 214 aa11.08□□□□□ -0.64
MED28-202ENST00000499786 ERCC6Q03468 1493 aa11.07□□□□□ -0.64
MED28-202ENST00000499786 TNIKQ9UKE5 1360 aa11.07□□□□□ -0.64
MED28-202ENST00000499786 UBTFP17480 764 aaKnown RBP11.07□□□□□ -0.64
MED28-202ENST00000499786 CLCN6P51797 869 aa11.07□□□□□ -0.64
MED28-202ENST00000499786 HS6ST3Q8IZP7 471 aa11.07□□□□□ -0.64
MED28-202ENST00000499786 TAOK2Q9UL54 1235 aa11.07□□□□□ -0.64
MED28-202ENST00000499786 ABCA10Q8WWZ4 1543 aa11.06□□□□□ -0.64
MED28-202ENST00000499786 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.06□□□□□ -0.64
MED28-202ENST00000499786 ZFP91Q96JP5 570 aaPredicted RBP11.06□□□□□ -0.64
MED28-202ENST00000499786 DNAJC5Q9H3Z4 198 aa11.06□□□□□ -0.64
MED28-202ENST00000499786 PDAP1Q13442 181 aaKnown RBP11.05□□□□□ -0.64
MED28-202ENST00000499786 WDR97A6NE52 1622 aa11.05□□□□□ -0.64
MED28-202ENST00000499786 CEP162Q5TB80 1403 aa11.04□□□□□ -0.64
MED28-202ENST00000499786 CHGAP10645 457 aaKnown RBP11.04□□□□□ -0.64
MED28-202ENST00000499786 GALR2O43603 387 aaPredicted RBP11.03□□□□□ -0.64
MED28-202ENST00000499786 TRPC6Q9Y210 931 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms