RNA–Protein interactions for RNA: ENST00000499786.4

MED28-202, Transcript of mediator complex subunit 28, humanhuman

TSL 2

Gene MED28, Length 606 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-202ENST00000499786 AEBP2Q6ZN18 517 aaPredicted RBP22.06■■□□□ 1.12
MED28-202ENST00000499786 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
MED28-202ENST00000499786 PHF23Q9BUL5 403 aaPredicted RBP19.07■□□□□ 0.64
MED28-202ENST00000499786 SENP3Q9H4L4 574 aaPredicted RBP18.61■□□□□ 0.57
MED28-202ENST00000499786 PLPPR3Q6T4P5 718 aa17.54■□□□□ 0.4
MED28-202ENST00000499786 FOXD1Q16676 465 aa17.31■□□□□ 0.36
MED28-202ENST00000499786 PPP6R1Q9UPN7 881 aa16.78■□□□□ 0.28
MED28-202ENST00000499786 ADRA2BP18089 450 aa16.71■□□□□ 0.27
MED28-202ENST00000499786 PIAS4Q8N2W9 510 aaPredicted RBP16.27■□□□□ 0.2
MED28-202ENST00000499786 MSH5O43196 834 aa15.85■□□□□ 0.13
MED28-202ENST00000499786 NISCHQ9Y2I1 1504 aa15.59■□□□□ 0.09
MED28-202ENST00000499786 PPP4R3CPQ6ZMV5 832 aa15.49■□□□□ 0.07
MED28-202ENST00000499786 KCNA4P22459 653 aa15.26■□□□□ 0.03
MED28-202ENST00000499786 SCAF1Q9H7N4 1312 aaKnown RBP15.22■□□□□ 0.03
MED28-202ENST00000499786 MAPK8IP2Q13387 824 aaPredicted RBP15.15■□□□□ 0.02
MED28-202ENST00000499786 NCBP3Q53F19 620 aaKnown RBP15.05■□□□□ -0
MED28-202ENST00000499786 CNKSR2Q8WXI2 1034 aa15.03■□□□□ -0
MED28-202ENST00000499786 POTEDQ86YR6 584 aa14.99□□□□□ -0.01
MED28-202ENST00000499786 DMRT2Q9Y5R5 561 aa14.92□□□□□ -0.02
MED28-202ENST00000499786 NPM3O75607 178 aaKnown RBP14.91□□□□□ -0.02
MED28-202ENST00000499786 RNF216Q9NWF9 866 aaPredicted RBP14.72□□□□□ -0.05
MED28-202ENST00000499786 HOXD11P31277 338 aaPredicted RBP14.68□□□□□ -0.06
MED28-202ENST00000499786 DNAJC5BQ9UF47 199 aa14.59□□□□□ -0.07
MED28-202ENST00000499786 SLC4A1APQ9BWU0 796 aaKnown RBP14.5□□□□□ -0.09
MED28-202ENST00000499786 EHMT2Q96KQ7 1210 aa14.16□□□□□ -0.14
MED28-202ENST00000499786 ZBTB22O15209 634 aa14.1□□□□□ -0.15
MED28-202ENST00000499786 SLC4A2P04920 1241 aa14.1□□□□□ -0.15
MED28-202ENST00000499786 DCAF8L1A6NGE4 600 aa14.09□□□□□ -0.15
MED28-202ENST00000499786 CSRNP3Q8WYN3 585 aa14.09□□□□□ -0.15
MED28-202ENST00000499786 FOXD4L1Q9NU39 408 aa13.99□□□□□ -0.17
MED28-202ENST00000499786 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.86□□□□□ -0.19
MED28-202ENST00000499786 MYCNP04198 464 aaPredicted RBP13.74□□□□□ -0.21
MED28-202ENST00000499786 U3KPZ7 1027 aaPredicted RBP13.74□□□□□ -0.21
MED28-202ENST00000499786 CCDC180Q9P1Z9 1646 aa13.68□□□□□ -0.22
MED28-202ENST00000499786 RNF39Q9H2S5 420 aa13.66□□□□□ -0.22
MED28-202ENST00000499786 ATXN8OSP0DMR3 200 aa13.53□□□□□ -0.24
MED28-202ENST00000499786 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.52□□□□□ -0.25
MED28-202ENST00000499786 HNRNPUL2Q1KMD3 747 aaKnown RBP13.52□□□□□ -0.25
MED28-202ENST00000499786 SAMD1Q6SPF0 538 aaPredicted RBP13.5□□□□□ -0.25
MED28-202ENST00000499786 C1QBPQ07021 282 aaKnown RBP13.47□□□□□ -0.25
MED28-202ENST00000499786 ATF5Q9Y2D1 282 aaPredicted RBP13.42□□□□□ -0.26
MED28-202ENST00000499786 APLP2Q06481 763 aa13.32□□□□□ -0.28
MED28-202ENST00000499786 SPINK5Q9NQ38 1064 aaPredicted RBP13.31□□□□□ -0.28
MED28-202ENST00000499786 ZNF219Q9P2Y4 722 aaPredicted RBP13.17□□□□□ -0.3
MED28-202ENST00000499786 CAPN15O75808 1086 aa13.16□□□□□ -0.3
MED28-202ENST00000499786 ZCCHC6Q5VYS8 1495 aaKnown RBP13.13□□□□□ -0.31
MED28-202ENST00000499786 TRHP20396 242 aaPredicted RBP13.13□□□□□ -0.31
MED28-202ENST00000499786 CACNB1Q02641 598 aaPredicted RBP13.12□□□□□ -0.31
MED28-202ENST00000499786 DSG3P32926 999 aa13.03□□□□□ -0.32
MED28-202ENST00000499786 POLA2Q14181 598 aa13□□□□□ -0.33
MED28-202ENST00000499786 ABCB7O75027 752 aa12.94□□□□□ -0.34
MED28-202ENST00000499786 DCAF1Q9Y4B6 1507 aa12.93□□□□□ -0.34
MED28-202ENST00000499786 MKRN4PQ13434 485 aaPredicted RBP12.86□□□□□ -0.35
MED28-202ENST00000499786 DCAF8L2P0C7V8 631 aa12.84□□□□□ -0.35
MED28-202ENST00000499786 ABCC9O60706 1549 aa12.82□□□□□ -0.36
MED28-202ENST00000499786 MYO15BQ96JP2 1530 aa12.77□□□□□ -0.37
MED28-202ENST00000499786 ZBTB12Q9Y330 459 aaPredicted RBP12.76□□□□□ -0.37
MED28-202ENST00000499786 FBLN2P98095 1184 aa12.73□□□□□ -0.37
MED28-202ENST00000499786 SHROOM4Q9ULL8 1493 aa12.72□□□□□ -0.37
MED28-202ENST00000499786 NACADO15069 1562 aa12.7□□□□□ -0.38
MED28-202ENST00000499786 FKBP8Q14318 412 aa12.63□□□□□ -0.39
MED28-202ENST00000499786 RB1CC1Q8TDY2 1594 aa12.61□□□□□ -0.39
MED28-202ENST00000499786 SCRIBQ14160 1630 aa12.55□□□□□ -0.4
MED28-202ENST00000499786 OSCARQ8IYS5 282 aa12.54□□□□□ -0.4
MED28-202ENST00000499786 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
MED28-202ENST00000499786 PROM2Q8N271 834 aa12.47□□□□□ -0.41
MED28-202ENST00000499786 SPDYE2BA6NHP3 402 aa12.46□□□□□ -0.41
MED28-202ENST00000499786 SPDYE6P0CI01 402 aa12.46□□□□□ -0.41
MED28-202ENST00000499786 SPDYE2Q495Y8 402 aa12.46□□□□□ -0.41
MED28-202ENST00000499786 SSUH2Q9Y2M2 353 aa12.43□□□□□ -0.42
MED28-202ENST00000499786 ZNF692Q9BU19 519 aaPredicted RBP12.39□□□□□ -0.43
MED28-202ENST00000499786 RBM42Q9BTD8 480 aaKnown RBP12.33□□□□□ -0.44
MED28-202ENST00000499786 UNC13AQ9UPW8 1703 aa12.29□□□□□ -0.44
MED28-202ENST00000499786 PABPN1Q86U42 306 aaKnown RBP eCLIP12.25□□□□□ -0.45
MED28-202ENST00000499786 AKT1S1Q96B36 256 aa12.25□□□□□ -0.45
MED28-202ENST00000499786 SUPT5HO00267 1087 aaKnown RBP12.24□□□□□ -0.45
MED28-202ENST00000499786 FBXO3Q9UK99 471 aa12.15□□□□□ -0.46
MED28-202ENST00000499786 REM2Q8IYK8 340 aaPredicted RBP12.14□□□□□ -0.47
MED28-202ENST00000499786 BICRAQ9NZM4 1560 aa12.11□□□□□ -0.47
MED28-202ENST00000499786 BAZ1AQ9NRL2 1556 aaPredicted RBP12.1□□□□□ -0.47
MED28-202ENST00000499786 RSF1Q96T23 1441 aaPredicted RBP12.07□□□□□ -0.48
MED28-202ENST00000499786 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
MED28-202ENST00000499786 CECR2Q9BXF3 1484 aa12.04□□□□□ -0.48
MED28-202ENST00000499786 SPDYE1Q8NFV5 336 aaPredicted RBP12.04□□□□□ -0.48
MED28-202ENST00000499786 SMARCA4P51532 1647 aa12.02□□□□□ -0.49
MED28-202ENST00000499786 MROH2BQ7Z745 1585 aa12.01□□□□□ -0.49
MED28-202ENST00000499786 VASPP50552 380 aaPredicted RBP12.01□□□□□ -0.49
MED28-202ENST00000499786 PITPNM1O00562 1244 aa11.99□□□□□ -0.49
MED28-202ENST00000499786 WIZO95785 1651 aa11.94□□□□□ -0.5
MED28-202ENST00000499786 CLEC11AQ9Y240 323 aa11.92□□□□□ -0.5
MED28-202ENST00000499786 IFNLR1Q8IU57 520 aaPredicted RBP11.9□□□□□ -0.5
MED28-202ENST00000499786 TOP2AP11388 1531 aaKnown RBP11.89□□□□□ -0.51
MED28-202ENST00000499786 PRR29P0C7W0 189 aa11.87□□□□□ -0.51
MED28-202ENST00000499786 SMARCA2P51531 1590 aa11.85□□□□□ -0.51
MED28-202ENST00000499786 PEG3Q9GZU2 1588 aa11.85□□□□□ -0.51
MED28-202ENST00000499786 MIER1Q8N108 512 aa11.84□□□□□ -0.51
MED28-202ENST00000499786 CREBZFQ9NS37 354 aa11.83□□□□□ -0.52
MED28-202ENST00000499786 EIF4G1Q04637 1599 aaKnown RBP11.8□□□□□ -0.52
MED28-202ENST00000499786 CHRDL2Q6WN34 429 aa11.8□□□□□ -0.52
MED28-202ENST00000499786 PLCD3Q8N3E9 789 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms