RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 RIMBP3Q9UFD9 1639 aa25.92■■□□□ 1.74
CPNE1-228ENST00000498814 KIAA0586Q9BVV6 1533 aa25.89■■□□□ 1.74
CPNE1-228ENST00000498814 SHROOM2Q13796 1616 aa25.89■■□□□ 1.74
CPNE1-228ENST00000498814 FAM9AQ8IZU1 332 aaPredicted RBP25.88■■□□□ 1.73
CPNE1-228ENST00000498814 JPH4Q96JJ6 628 aa25.81■■□□□ 1.72
CPNE1-228ENST00000498814 CTTNBP2Q8WZ74 1663 aa25.78■■□□□ 1.72
CPNE1-228ENST00000498814 IQGAP2Q13576 1575 aa25.78■■□□□ 1.72
CPNE1-228ENST00000498814 KIF21BO75037 1637 aa25.77■■□□□ 1.72
CPNE1-228ENST00000498814 ERCC6L2Q5T890 1561 aa25.74■■□□□ 1.71
CPNE1-228ENST00000498814 PRG4Q92954 1404 aaPredicted RBP25.74■■□□□ 1.71
CPNE1-228ENST00000498814 ARAP1Q96P48 1450 aa25.72■■□□□ 1.71
CPNE1-228ENST00000498814 UGGT2Q9NYU1 1516 aa25.65■■□□□ 1.7
CPNE1-228ENST00000498814 CYB5RLQ6IPT4 315 aa25.65■■□□□ 1.7
CPNE1-228ENST00000498814 GOLGA3Q08378 1498 aa25.61■■□□□ 1.69
CPNE1-228ENST00000498814 CARMIL2Q6F5E8 1435 aa25.6■■□□□ 1.69
CPNE1-228ENST00000498814 DISP1Q96F81 1524 aa25.57■■□□□ 1.68
CPNE1-228ENST00000498814 KIAA0556O60303 1618 aa25.52■■□□□ 1.68
CPNE1-228ENST00000498814 UBTFP17480 764 aaKnown RBP25.5■■□□□ 1.67
CPNE1-228ENST00000498814 TNIKQ9UKE5 1360 aa25.5■■□□□ 1.67
CPNE1-228ENST00000498814 EHMT2Q96KQ7 1210 aa25.49■■□□□ 1.67
CPNE1-228ENST00000498814 PTPRGP23470 1445 aa25.46■■□□□ 1.67
CPNE1-228ENST00000498814 SAMD9Q5K651 1589 aa25.44■■□□□ 1.66
CPNE1-228ENST00000498814 TTBK1Q5TCY1 1321 aaPredicted RBP25.37■■□□□ 1.65
CPNE1-228ENST00000498814 EFCAB5A4FU69 1503 aa25.36■■□□□ 1.65
CPNE1-228ENST00000498814 ADCY10Q96PN6 1610 aa25.34■■□□□ 1.65
CPNE1-228ENST00000498814 RANGAP1P46060 587 aaPredicted RBP25.34■■□□□ 1.65
CPNE1-228ENST00000498814 P3H3Q8IVL6 736 aa25.32■■□□□ 1.64
CPNE1-228ENST00000498814 UACAQ9BZF9 1416 aa25.3■■□□□ 1.64
CPNE1-228ENST00000498814 UHRF1BP1LA0JNW5 1464 aa25.29■■□□□ 1.64
CPNE1-228ENST00000498814 ABCC2Q92887 1545 aa25.26■■□□□ 1.63
CPNE1-228ENST00000498814 FHOD3Q2V2M9 1422 aa25.25■■□□□ 1.63
CPNE1-228ENST00000498814 ABCA8O94911 1581 aa25.24■■□□□ 1.63
CPNE1-228ENST00000498814 ARHGAP35Q9NRY4 1499 aa25.24■■□□□ 1.63
CPNE1-228ENST00000498814 PLB1Q6P1J6 1458 aa25.23■■□□□ 1.63
CPNE1-228ENST00000498814 NPM1P06748 294 aaKnown RBP eCLIP25.22■■□□□ 1.63
CPNE1-228ENST00000498814 LOC105371045A0A1W2PR82 267 aa25.2■■□□□ 1.62
CPNE1-228ENST00000498814 KDM5BQ9UGL1 1544 aa25.17■■□□□ 1.62
CPNE1-228ENST00000498814 CLIP1P30622 1438 aa25.15■■□□□ 1.62
CPNE1-228ENST00000498814 MAPKBP1O60336 1514 aa25.15■■□□□ 1.62
CPNE1-228ENST00000498814 RAPGEF6Q8TEU7 1601 aa25.15■■□□□ 1.62
CPNE1-228ENST00000498814 ZCCHC11Q5TAX3 1644 aaKnown RBP25.12■■□□□ 1.61
CPNE1-228ENST00000498814 FMN1Q68DA7 1419 aa25.11■■□□□ 1.61
CPNE1-228ENST00000498814 CEP162Q5TB80 1403 aa25.08■■□□□ 1.61
CPNE1-228ENST00000498814 NUP153P49790 1475 aaKnown RBP25.04■■□□□ 1.6
CPNE1-228ENST00000498814 TRHP20396 242 aaPredicted RBP25.04■■□□□ 1.6
CPNE1-228ENST00000498814 ASXL2Q76L83 1435 aa25.03■■□□□ 1.6
CPNE1-228ENST00000498814 ATP10BO94823 1461 aa25.02■■□□□ 1.6
CPNE1-228ENST00000498814 KIF13AQ9H1H9 1805 aa25■■□□□ 1.59
CPNE1-228ENST00000498814 ABCC10Q5T3U5 1492 aa24.99■■□□□ 1.59
CPNE1-228ENST00000498814 HECW1Q76N89 1606 aa24.97■■□□□ 1.59
CPNE1-228ENST00000498814 DIP2BQ9P265 1576 aa24.97■■□□□ 1.59
CPNE1-228ENST00000498814 ARID3CA6NKF2 412 aa24.96■■□□□ 1.59
CPNE1-228ENST00000498814 WDR7Q9Y4E6 1490 aa24.94■■□□□ 1.58
CPNE1-228ENST00000498814 CASKIN1Q8WXD9 1431 aa24.94■■□□□ 1.58
CPNE1-228ENST00000498814 PCF11O94913 1555 aaKnown RBP24.93■■□□□ 1.58
CPNE1-228ENST00000498814 FAM69CQ0P6D2 419 aa24.9■■□□□ 1.58
CPNE1-228ENST00000498814 EPRSP07814 1512 aaKnown RBP24.9■■□□□ 1.58
CPNE1-228ENST00000498814 FYCO1Q9BQS8 1478 aa24.89■■□□□ 1.58
CPNE1-228ENST00000498814 LRRIQ1Q96JM4 1722 aa24.89■■□□□ 1.58
CPNE1-228ENST00000498814 GLI2P10070 1586 aa24.89■■□□□ 1.58
CPNE1-228ENST00000498814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.89■■□□□ 1.58
CPNE1-228ENST00000498814 HNRNPUL2Q1KMD3 747 aaKnown RBP24.89■■□□□ 1.58
CPNE1-228ENST00000498814 ATP1B4Q9UN42 357 aaPredicted RBP24.89■■□□□ 1.58
CPNE1-228ENST00000498814 CDK13Q14004 1512 aaKnown RBP24.87■■□□□ 1.57
CPNE1-228ENST00000498814 CCDC18Q5T9S5 1454 aa24.83■■□□□ 1.56
CPNE1-228ENST00000498814 PLEKHD1A6NEE1 506 aa24.82■■□□□ 1.56
CPNE1-228ENST00000498814 KCNH8Q96L42 1107 aa24.8■■□□□ 1.56
CPNE1-228ENST00000498814 MAP3K4Q9Y6R4 1608 aa24.79■■□□□ 1.56
CPNE1-228ENST00000498814 VPS8Q8N3P4 1428 aa24.78■■□□□ 1.56
CPNE1-228ENST00000498814 CDK11AQ9UQ88 783 aaPredicted RBP24.77■■□□□ 1.56
CPNE1-228ENST00000498814 TSPOAP1O95153 1857 aa24.77■■□□□ 1.56
CPNE1-228ENST00000498814 CFAP43Q8NDM7 1665 aa24.76■■□□□ 1.55
CPNE1-228ENST00000498814 ABCA9Q8IUA7 1624 aa24.73■■□□□ 1.55
CPNE1-228ENST00000498814 PPRC1Q5VV67 1664 aaKnown RBP24.72■■□□□ 1.55
CPNE1-228ENST00000498814 TROQ12816 1431 aaPredicted RBP24.69■■□□□ 1.54
CPNE1-228ENST00000498814 CD109Q6YHK3 1445 aa24.68■■□□□ 1.54
CPNE1-228ENST00000498814 MAGI3Q5TCQ9 1506 aa24.65■■□□□ 1.54
CPNE1-228ENST00000498814 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.65■■□□□ 1.54
CPNE1-228ENST00000498814 KIF14Q15058 1648 aa24.63■■□□□ 1.53
CPNE1-228ENST00000498814 TEX14Q8IWB6 1497 aa24.63■■□□□ 1.53
CPNE1-228ENST00000498814 TTC37Q6PGP7 1564 aa24.61■■□□□ 1.53
CPNE1-228ENST00000498814 TIAM1Q13009 1591 aa24.59■■□□□ 1.53
CPNE1-228ENST00000498814 MAP3K1Q13233 1512 aa24.58■■□□□ 1.53
CPNE1-228ENST00000498814 MTUS2Q5JR59 1369 aa24.55■■□□□ 1.52
CPNE1-228ENST00000498814 MYO5CQ9NQX4 1742 aa24.54■■□□□ 1.52
CPNE1-228ENST00000498814 EHBP1L1Q8N3D4 1523 aa24.54■■□□□ 1.52
CPNE1-228ENST00000498814 KDM6BO15054 1643 aa24.51■■□□□ 1.51
CPNE1-228ENST00000498814 PLCH2O75038 1416 aa24.51■■□□□ 1.51
CPNE1-228ENST00000498814 ARAP3Q8WWN8 1544 aa24.5■■□□□ 1.51
CPNE1-228ENST00000498814 PHLDB1Q86UU1 1377 aa24.49■■□□□ 1.51
CPNE1-228ENST00000498814 NEO1Q92859 1461 aa24.49■■□□□ 1.51
CPNE1-228ENST00000498814 LRRC9Q6ZRR7 1453 aa24.48■■□□□ 1.51
CPNE1-228ENST00000498814 CFAP74Q9C0B2 1584 aa24.47■■□□□ 1.51
CPNE1-228ENST00000498814 APLP2Q06481 763 aa24.47■■□□□ 1.51
CPNE1-228ENST00000498814 CDC42BPAQ5VT25 1732 aa24.46■■□□□ 1.51
CPNE1-228ENST00000498814 FANCAO15360 1455 aa24.45■■□□□ 1.51
CPNE1-228ENST00000498814 SUPT6HQ7KZ85 1726 aaKnown RBP24.45■■□□□ 1.5
CPNE1-228ENST00000498814 CDC42BPBQ9Y5S2 1711 aa24.45■■□□□ 1.5
CPNE1-228ENST00000498814 PREX2Q70Z35 1606 aa24.45■■□□□ 1.5
CPNE1-228ENST00000498814 COL17A1Q9UMD9 1497 aaPredicted RBP24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 289.5 ms