RNA–Protein interactions for RNA: ENST00000498653.5

FXN-205, Transcript of frataxin, humanhuman

TSL 1 (best) BASIC

Gene FXN, Length 856 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FXN-205ENST00000498653 PPRC1Q5VV67 1664 aaKnown RBP11□□□□□ -0.65
FXN-205ENST00000498653 CEP170Q5SW79 1584 aa10.99□□□□□ -0.65
FXN-205ENST00000498653 DNMBPQ6XZF7 1577 aa10.98□□□□□ -0.65
FXN-205ENST00000498653 PCF11O94913 1555 aaKnown RBP10.96□□□□□ -0.65
FXN-205ENST00000498653 CHMP7Q8WUX9 453 aaPredicted RBP10.96□□□□□ -0.65
FXN-205ENST00000498653 WDR97A6NE52 1622 aa10.94□□□□□ -0.66
FXN-205ENST00000498653 SHROOM2Q13796 1616 aa10.94□□□□□ -0.66
FXN-205ENST00000498653 POLA1P09884 1462 aaPredicted RBP10.93□□□□□ -0.66
FXN-205ENST00000498653 COL17A1Q9UMD9 1497 aaPredicted RBP10.93□□□□□ -0.66
FXN-205ENST00000498653 ABCC8Q09428 1581 aa10.91□□□□□ -0.66
FXN-205ENST00000498653 TDRD9Q8NDG6 1382 aaKnown RBP10.9□□□□□ -0.66
FXN-205ENST00000498653 WIZO95785 1651 aa10.9□□□□□ -0.66
FXN-205ENST00000498653 RAD54L2Q9Y4B4 1467 aa10.88□□□□□ -0.67
FXN-205ENST00000498653 ADCY10Q96PN6 1610 aa10.87□□□□□ -0.67
FXN-205ENST00000498653 NCBP3Q53F19 620 aaKnown RBP10.87□□□□□ -0.67
FXN-205ENST00000498653 GRIN2BQ13224 1484 aa10.85□□□□□ -0.67
FXN-205ENST00000498653 PBRM1Q86U86 1689 aa10.84□□□□□ -0.67
FXN-205ENST00000498653 PTPRMP28827 1452 aa10.83□□□□□ -0.68
FXN-205ENST00000498653 KIF21BO75037 1637 aa10.81□□□□□ -0.68
FXN-205ENST00000498653 KCNA4P22459 653 aa10.81□□□□□ -0.68
FXN-205ENST00000498653 ADAMTSL3P82987 1691 aa10.79□□□□□ -0.68
FXN-205ENST00000498653 MED1Q15648 1581 aaPredicted RBP10.79□□□□□ -0.68
FXN-205ENST00000498653 NUP160Q12769 1436 aa10.78□□□□□ -0.68
FXN-205ENST00000498653 CNKSR2Q8WXI2 1034 aa10.77□□□□□ -0.69
FXN-205ENST00000498653 GLI2P10070 1586 aa10.77□□□□□ -0.69
FXN-205ENST00000498653 SOGA1O94964 1423 aa10.75□□□□□ -0.69
FXN-205ENST00000498653 GRIN2AQ12879 1464 aa10.75□□□□□ -0.69
FXN-205ENST00000498653 MAPK8IP2Q13387 824 aaPredicted RBP10.72□□□□□ -0.69
FXN-205ENST00000498653 NPM1P06748 294 aaKnown RBP eCLIP10.71□□□□□ -0.69
FXN-205ENST00000498653 HSPA2P54652 639 aa10.71□□□□□ -0.69
FXN-205ENST00000498653 MAP3K4Q9Y6R4 1608 aa10.71□□□□□ -0.69
FXN-205ENST00000498653 PRG4Q92954 1404 aaPredicted RBP10.7□□□□□ -0.7
FXN-205ENST00000498653 SRCAPQ6ZRS2 3230 aa10.69□□□□□ -0.7
FXN-205ENST00000498653 MADDQ8WXG6 1647 aa10.67□□□□□ -0.7
FXN-205ENST00000498653 TOP2AP11388 1531 aaKnown RBP10.67□□□□□ -0.7
FXN-205ENST00000498653 FGD5Q6ZNL6 1462 aa10.67□□□□□ -0.7
FXN-205ENST00000498653 ABCA5Q8WWZ7 1642 aa10.66□□□□□ -0.7
FXN-205ENST00000498653 ADAMTS12P58397 1594 aa10.65□□□□□ -0.7
FXN-205ENST00000498653 DMRT2Q9Y5R5 561 aa10.65□□□□□ -0.7
FXN-205ENST00000498653 TEX14Q8IWB6 1497 aa10.64□□□□□ -0.71
FXN-205ENST00000498653 IQSEC2Q5JU85 1478 aa10.63□□□□□ -0.71
FXN-205ENST00000498653 BCORL1Q5H9F3 1711 aa10.63□□□□□ -0.71
FXN-205ENST00000498653 STRCQ7RTU9 1775 aa10.61□□□□□ -0.71
FXN-205ENST00000498653 LTBP4Q8N2S1 1624 aa10.61□□□□□ -0.71
FXN-205ENST00000498653 ASXL2Q76L83 1435 aa10.59□□□□□ -0.71
FXN-205ENST00000498653 NPM3O75607 178 aaKnown RBP10.59□□□□□ -0.71
FXN-205ENST00000498653 RIMS1Q86UR5 1692 aaKnown RBP10.59□□□□□ -0.71
FXN-205ENST00000498653 KIAA0586Q9BVV6 1533 aa10.58□□□□□ -0.72
FXN-205ENST00000498653 PLB1Q6P1J6 1458 aa10.56□□□□□ -0.72
FXN-205ENST00000498653 EPRSP07814 1512 aaKnown RBP10.55□□□□□ -0.72
FXN-205ENST00000498653 RUSC2Q8N2Y8 1516 aa10.55□□□□□ -0.72
FXN-205ENST00000498653 CUL7Q14999 1698 aa10.53□□□□□ -0.72
FXN-205ENST00000498653 RNF216Q9NWF9 866 aaPredicted RBP10.53□□□□□ -0.72
FXN-205ENST00000498653 ABCC2Q92887 1545 aa10.53□□□□□ -0.72
FXN-205ENST00000498653 CCDC88BA6NC98 1476 aa10.5□□□□□ -0.73
FXN-205ENST00000498653 CUX1P39880 1505 aa10.5□□□□□ -0.73
FXN-205ENST00000498653 JPH4Q96JJ6 628 aa10.5□□□□□ -0.73
FXN-205ENST00000498653 YEATS2Q9ULM3 1422 aa10.5□□□□□ -0.73
FXN-205ENST00000498653 CFAP43Q8NDM7 1665 aa10.49□□□□□ -0.73
FXN-205ENST00000498653 ABCA10Q8WWZ4 1543 aa10.48□□□□□ -0.73
FXN-205ENST00000498653 PREX1Q8TCU6 1659 aa10.47□□□□□ -0.73
FXN-205ENST00000498653 SETD1AO15047 1707 aaKnown RBP10.45□□□□□ -0.74
FXN-205ENST00000498653 FHAD1B1AJZ9 1412 aa10.45□□□□□ -0.74
FXN-205ENST00000498653 PTPRTO14522 1441 aa10.45□□□□□ -0.74
FXN-205ENST00000498653 HOXD11P31277 338 aaPredicted RBP10.44□□□□□ -0.74
FXN-205ENST00000498653 MAGI3Q5TCQ9 1506 aa10.43□□□□□ -0.74
FXN-205ENST00000498653 HSPA1LP34931 641 aa10.41□□□□□ -0.74
FXN-205ENST00000498653 UBAP1LF5GYI3 381 aa10.4□□□□□ -0.74
FXN-205ENST00000498653 RGS17Q9UGC6 210 aaPredicted RBP10.39□□□□□ -0.75
FXN-205ENST00000498653 TTC37Q6PGP7 1564 aa10.39□□□□□ -0.75
FXN-205ENST00000498653 SLC4A1APQ9BWU0 796 aaKnown RBP10.38□□□□□ -0.75
FXN-205ENST00000498653 ARAP3Q8WWN8 1544 aa10.38□□□□□ -0.75
FXN-205ENST00000498653 UHRF1BP1LA0JNW5 1464 aa10.36□□□□□ -0.75
FXN-205ENST00000498653 IFFO2Q5TF58 517 aa10.36□□□□□ -0.75
FXN-205ENST00000498653 ZCCHC11Q5TAX3 1644 aaKnown RBP10.36□□□□□ -0.75
FXN-205ENST00000498653 SIGLEC1Q9BZZ2 1709 aa10.35□□□□□ -0.75
FXN-205ENST00000498653 KDM5BQ9UGL1 1544 aa10.34□□□□□ -0.75
FXN-205ENST00000498653 FRMPD1Q5SYB0 1578 aa10.34□□□□□ -0.75
FXN-205ENST00000498653 FER1L4A9Z1Z3 1794 aa10.34□□□□□ -0.75
FXN-205ENST00000498653 ARHGEF40Q8TER5 1519 aa10.33□□□□□ -0.76
FXN-205ENST00000498653 ERICH3Q5RHP9 1530 aa10.32□□□□□ -0.76
FXN-205ENST00000498653 PTPRGP23470 1445 aa10.32□□□□□ -0.76
FXN-205ENST00000498653 CD109Q6YHK3 1445 aa10.31□□□□□ -0.76
FXN-205ENST00000498653 WDR7Q9Y4E6 1490 aa10.3□□□□□ -0.76
FXN-205ENST00000498653 ARID4BQ4LE39 1312 aaPredicted RBP10.28□□□□□ -0.76
FXN-205ENST00000498653 ALKQ9UM73 1620 aa10.25□□□□□ -0.77
FXN-205ENST00000498653 UACAQ9BZF9 1416 aa10.24□□□□□ -0.77
FXN-205ENST00000498653 POTEAQ6S8J7 498 aa10.24□□□□□ -0.77
FXN-205ENST00000498653 UHRF1BP1Q6BDS2 1440 aa10.24□□□□□ -0.77
FXN-205ENST00000498653 ZNF335Q9H4Z2 1342 aaPredicted RBP10.23□□□□□ -0.77
FXN-205ENST00000498653 NCOA1Q15788 1441 aa10.23□□□□□ -0.77
FXN-205ENST00000498653 DCAF8L1A6NGE4 600 aa10.22□□□□□ -0.77
FXN-205ENST00000498653 TNIKQ9UKE5 1360 aa10.22□□□□□ -0.77
FXN-205ENST00000498653 KIAA0556O60303 1618 aa10.22□□□□□ -0.77
FXN-205ENST00000498653 UPF1Q92900 1129 aaKnown RBP eCLIP10.21□□□□□ -0.77
FXN-205ENST00000498653 FANCAO15360 1455 aa10.2□□□□□ -0.78
FXN-205ENST00000498653 PIP4K2BP78356 416 aa10.2□□□□□ -0.78
FXN-205ENST00000498653 TTBK1Q5TCY1 1321 aaPredicted RBP10.19□□□□□ -0.78
FXN-205ENST00000498653 RAPGEF3O95398 923 aa10.19□□□□□ -0.78
FXN-205ENST00000498653 ARHGEF12Q9NZN5 1544 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms