RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 TARBP1Q13395 1621 aaKnown RBP24.45■■□□□ 1.5
COL6A1-206ENST00000498614 AQRO60306 1485 aaKnown RBP eCLIP24.42■■□□□ 1.5
COL6A1-206ENST00000498614 ZNF608Q9ULD9 1512 aaPredicted RBP24.42■■□□□ 1.5
COL6A1-206ENST00000498614 IGF1RP08069 1367 aa24.41■■□□□ 1.5
COL6A1-206ENST00000498614 WDR97A6NE52 1622 aa24.38■■□□□ 1.49
COL6A1-206ENST00000498614 IFT140Q96RY7 1462 aa24.37■■□□□ 1.49
COL6A1-206ENST00000498614 GAPVD1Q14C86 1478 aa24.35■■□□□ 1.49
COL6A1-206ENST00000498614 YTHDC1Q96MU7 727 aaKnown RBP24.34■■□□□ 1.49
COL6A1-206ENST00000498614 ABCA5Q8WWZ7 1642 aa24.29■■□□□ 1.48
COL6A1-206ENST00000498614 KANK4Q5T7N3 995 aaPredicted RBP24.29■■□□□ 1.48
COL6A1-206ENST00000498614 MIER1Q8N108 512 aa24.28■■□□□ 1.48
COL6A1-206ENST00000498614 CARMIL1Q5VZK9 1371 aa24.28■■□□□ 1.48
COL6A1-206ENST00000498614 ARHGAP35Q9NRY4 1499 aa24.27■■□□□ 1.48
COL6A1-206ENST00000498614 EIF4G3O43432 1585 aaKnown RBP24.21■■□□□ 1.47
COL6A1-206ENST00000498614 GRIN2BQ13224 1484 aa24.16■■□□□ 1.46
COL6A1-206ENST00000498614 PBRM1Q86U86 1689 aa24.15■■□□□ 1.46
COL6A1-206ENST00000498614 FBLN2P98095 1184 aa24.11■■□□□ 1.45
COL6A1-206ENST00000498614 SNAPC4Q5SXM2 1469 aa24.11■■□□□ 1.45
COL6A1-206ENST00000498614 MYT1Q01538 1121 aa24.09■■□□□ 1.45
COL6A1-206ENST00000498614 RRBP1Q9P2E9 1410 aaKnown RBP24.09■■□□□ 1.45
COL6A1-206ENST00000498614 CUL7Q14999 1698 aa24.07■■□□□ 1.44
COL6A1-206ENST00000498614 FHAD1B1AJZ9 1412 aa24.03■■□□□ 1.44
COL6A1-206ENST00000498614 DHX57Q6P158 1386 aaKnown RBP24.03■■□□□ 1.44
COL6A1-206ENST00000498614 CHMP7Q8WUX9 453 aaPredicted RBP24.02■■□□□ 1.44
COL6A1-206ENST00000498614 ADAMTS12P58397 1594 aa24.01■■□□□ 1.43
COL6A1-206ENST00000498614 CCNB3Q8WWL7 1395 aa24■■□□□ 1.43
COL6A1-206ENST00000498614 TIAM1Q13009 1591 aa23.98■■□□□ 1.43
COL6A1-206ENST00000498614 ITGAEP38570 1179 aa23.95■■□□□ 1.43
COL6A1-206ENST00000498614 MAGI1Q96QZ7 1491 aaPredicted RBP23.95■■□□□ 1.42
COL6A1-206ENST00000498614 P3H3Q8IVL6 736 aa23.94■■□□□ 1.42
COL6A1-206ENST00000498614 CLSPNQ9HAW4 1339 aa23.94■■□□□ 1.42
COL6A1-206ENST00000498614 MAP3K1Q13233 1512 aa23.92■■□□□ 1.42
COL6A1-206ENST00000498614 SYNJ2O15056 1496 aa23.9■■□□□ 1.42
COL6A1-206ENST00000498614 GRIN2AQ12879 1464 aa23.88■■□□□ 1.41
COL6A1-206ENST00000498614 LRRC9Q6ZRR7 1453 aa23.88■■□□□ 1.41
COL6A1-206ENST00000498614 PCF11O94913 1555 aaKnown RBP23.88■■□□□ 1.41
COL6A1-206ENST00000498614 FHOD3Q2V2M9 1422 aa23.85■■□□□ 1.41
COL6A1-206ENST00000498614 ATP1B4Q9UN42 357 aaPredicted RBP23.85■■□□□ 1.41
COL6A1-206ENST00000498614 CFAP43Q8NDM7 1665 aa23.83■■□□□ 1.41
COL6A1-206ENST00000498614 PHLDB1Q86UU1 1377 aa23.81■■□□□ 1.4
COL6A1-206ENST00000498614 CTTNBP2Q8WZ74 1663 aa23.8■■□□□ 1.4
COL6A1-206ENST00000498614 EFCAB5A4FU69 1503 aa23.77■■□□□ 1.4
COL6A1-206ENST00000498614 RAB3GAP2Q9H2M9 1393 aa23.77■■□□□ 1.4
COL6A1-206ENST00000498614 CEP170Q5SW79 1584 aa23.76■■□□□ 1.39
COL6A1-206ENST00000498614 CHD1O14646 1710 aa23.76■■□□□ 1.39
COL6A1-206ENST00000498614 FAM50AQ14320 339 aaKnown RBP23.73■■□□□ 1.39
COL6A1-206ENST00000498614 FYCO1Q9BQS8 1478 aa23.73■■□□□ 1.39
COL6A1-206ENST00000498614 CASKIN1Q8WXD9 1431 aa23.7■■□□□ 1.38
COL6A1-206ENST00000498614 KIAA0586Q9BVV6 1533 aa23.69■■□□□ 1.38
COL6A1-206ENST00000498614 IQGAP2Q13576 1575 aa23.69■■□□□ 1.38
COL6A1-206ENST00000498614 NUP160Q12769 1436 aa23.69■■□□□ 1.38
COL6A1-206ENST00000498614 SUPT16HQ9Y5B9 1047 aaKnown RBP23.68■■□□□ 1.38
COL6A1-206ENST00000498614 SETD5Q9C0A6 1442 aa23.68■■□□□ 1.38
COL6A1-206ENST00000498614 JPH4Q96JJ6 628 aa23.66■■□□□ 1.38
COL6A1-206ENST00000498614 MAPKBP1O60336 1514 aa23.65■■□□□ 1.38
COL6A1-206ENST00000498614 FMN1Q68DA7 1419 aa23.63■■□□□ 1.37
COL6A1-206ENST00000498614 SAMD9Q5K651 1589 aa23.58■■□□□ 1.36
COL6A1-206ENST00000498614 UGGT2Q9NYU1 1516 aa23.54■■□□□ 1.36
COL6A1-206ENST00000498614 LRRIQ1Q96JM4 1722 aa23.53■■□□□ 1.36
COL6A1-206ENST00000498614 DISP1Q96F81 1524 aa23.53■■□□□ 1.36
COL6A1-206ENST00000498614 MTUS2Q5JR59 1369 aa23.52■■□□□ 1.36
COL6A1-206ENST00000498614 OSCARQ8IYS5 282 aa23.51■■□□□ 1.35
COL6A1-206ENST00000498614 FGD6Q6ZV73 1430 aa23.5■■□□□ 1.35
COL6A1-206ENST00000498614 SIN3AQ96ST3 1273 aa23.49■■□□□ 1.35
COL6A1-206ENST00000498614 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.49■■□□□ 1.35
COL6A1-206ENST00000498614 PRG4Q92954 1404 aaPredicted RBP23.48■■□□□ 1.35
COL6A1-206ENST00000498614 ARID3CA6NKF2 412 aa23.47■■□□□ 1.35
COL6A1-206ENST00000498614 KIAA0556O60303 1618 aa23.45■■□□□ 1.35
COL6A1-206ENST00000498614 KCNH8Q96L42 1107 aa23.45■■□□□ 1.34
COL6A1-206ENST00000498614 ERCC6L2Q5T890 1561 aa23.42■■□□□ 1.34
COL6A1-206ENST00000498614 TSHZ2Q9NRE2 1034 aa23.42■■□□□ 1.34
COL6A1-206ENST00000498614 CLASP1Q7Z460 1538 aa23.42■■□□□ 1.34
COL6A1-206ENST00000498614 CARMIL2Q6F5E8 1435 aa23.42■■□□□ 1.34
COL6A1-206ENST00000498614 NCOA2Q15596 1464 aa23.41■■□□□ 1.34
COL6A1-206ENST00000498614 PTPRKQ15262 1439 aa23.37■■□□□ 1.33
COL6A1-206ENST00000498614 SUPT6HQ7KZ85 1726 aaKnown RBP23.37■■□□□ 1.33
COL6A1-206ENST00000498614 MYOM3Q5VTT5 1437 aa23.36■■□□□ 1.33
COL6A1-206ENST00000498614 EHBP1L1Q8N3D4 1523 aa23.36■■□□□ 1.33
COL6A1-206ENST00000498614 SHROOM2Q13796 1616 aa23.34■■□□□ 1.33
COL6A1-206ENST00000498614 CCDC18Q5T9S5 1454 aa23.34■■□□□ 1.33
COL6A1-206ENST00000498614 MAGI3Q5TCQ9 1506 aa23.33■■□□□ 1.33
COL6A1-206ENST00000498614 PLB1Q6P1J6 1458 aa23.32■■□□□ 1.32
COL6A1-206ENST00000498614 PTPN23Q9H3S7 1636 aa23.3■■□□□ 1.32
COL6A1-206ENST00000498614 HFM1A2PYH4 1435 aa23.3■■□□□ 1.32
COL6A1-206ENST00000498614 PTPRGP23470 1445 aa23.3■■□□□ 1.32
COL6A1-206ENST00000498614 HECW1Q76N89 1606 aa23.28■■□□□ 1.32
COL6A1-206ENST00000498614 TIMELESSQ9UNS1 1208 aa23.27■■□□□ 1.32
COL6A1-206ENST00000498614 DDX10Q13206 875 aaKnown RBP23.26■■□□□ 1.31
COL6A1-206ENST00000498614 ARHGEF11O15085 1522 aa23.25■■□□□ 1.31
COL6A1-206ENST00000498614 NAIPQ13075 1403 aa23.25■■□□□ 1.31
COL6A1-206ENST00000498614 UACAQ9BZF9 1416 aa23.24■■□□□ 1.31
COL6A1-206ENST00000498614 PPP1R15AO75807 674 aaPredicted RBP23.23■■□□□ 1.31
COL6A1-206ENST00000498614 EPRSP07814 1512 aaKnown RBP23.22■■□□□ 1.31
COL6A1-206ENST00000498614 BCANQ96GW7 911 aa23.22■■□□□ 1.31
COL6A1-206ENST00000498614 CDK13Q14004 1512 aaKnown RBP23.22■■□□□ 1.31
COL6A1-206ENST00000498614 NUP153P49790 1475 aaKnown RBP23.19■■□□□ 1.3
COL6A1-206ENST00000498614 RAPGEF6Q8TEU7 1601 aa23.19■■□□□ 1.3
COL6A1-206ENST00000498614 HIRIP3Q9BW71 556 aaPredicted RBP23.19■■□□□ 1.3
COL6A1-206ENST00000498614 TONSLQ96HA7 1378 aa23.18■■□□□ 1.3
COL6A1-206ENST00000498614 FKBP8Q14318 412 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms