RNA–Protein interactions for RNA: ENST00000498020.1

HLA-DMB-262, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 4,569 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-262ENST00000498020 STAG3Q9UJ98 1225 aa11.55□□□□□ -0.56
HLA-DMB-262ENST00000498020 IGF1RP08069 1367 aa11.55□□□□□ -0.56
HLA-DMB-262ENST00000498020 NESP48681 1621 aa11.54□□□□□ -0.56
HLA-DMB-262ENST00000498020 FGD5Q6ZNL6 1462 aa11.54□□□□□ -0.56
HLA-DMB-262ENST00000498020 POLR3GLQ9BT43 218 aa11.53□□□□□ -0.56
HLA-DMB-262ENST00000498020 FHAD1B1AJZ9 1412 aa11.53□□□□□ -0.56
HLA-DMB-262ENST00000498020 BIVM-ERCC5R4GMW8 1640 aa11.52□□□□□ -0.57
HLA-DMB-262ENST00000498020 KANK4Q5T7N3 995 aaPredicted RBP11.51□□□□□ -0.57
HLA-DMB-262ENST00000498020 ERICH6Q7L0X2 663 aa11.5□□□□□ -0.57
HLA-DMB-262ENST00000498020 SCAF1Q9H7N4 1312 aaKnown RBP11.5□□□□□ -0.57
HLA-DMB-262ENST00000498020 CLSPNQ9HAW4 1339 aa11.49□□□□□ -0.57
HLA-DMB-262ENST00000498020 CHGAP10645 457 aaKnown RBP11.48□□□□□ -0.57
HLA-DMB-262ENST00000498020 CNGB1Q14028 1251 aaPredicted RBP11.48□□□□□ -0.57
HLA-DMB-262ENST00000498020 CCNB3Q8WWL7 1395 aa11.48□□□□□ -0.57
HLA-DMB-262ENST00000498020 LAMC3Q9Y6N6 1575 aa11.47□□□□□ -0.57
HLA-DMB-262ENST00000498020 CDK11AQ9UQ88 783 aaPredicted RBP11.47□□□□□ -0.57
HLA-DMB-262ENST00000498020 OSCARQ8IYS5 282 aa11.46□□□□□ -0.58
HLA-DMB-262ENST00000498020 MLECQ14165 292 aa11.45□□□□□ -0.58
HLA-DMB-262ENST00000498020 PLEKHG5O94827 1062 aa11.45□□□□□ -0.58
HLA-DMB-262ENST00000498020 TDRD9Q8NDG6 1382 aaKnown RBP11.45□□□□□ -0.58
HLA-DMB-262ENST00000498020 MTUS2Q5JR59 1369 aa11.45□□□□□ -0.58
HLA-DMB-262ENST00000498020 TRIM52Q96A61 297 aa11.44□□□□□ -0.58
HLA-DMB-262ENST00000498020 YTHDC1Q96MU7 727 aaKnown RBP11.43□□□□□ -0.58
HLA-DMB-262ENST00000498020 RAD54L2Q9Y4B4 1467 aa11.43□□□□□ -0.58
HLA-DMB-262ENST00000498020 ARAP1Q96P48 1450 aa11.43□□□□□ -0.58
HLA-DMB-262ENST00000498020 ARHGAP35Q9NRY4 1499 aa11.41□□□□□ -0.58
HLA-DMB-262ENST00000498020 NEFLP07196 543 aa11.41□□□□□ -0.58
HLA-DMB-262ENST00000498020 TOPBP1Q92547 1522 aa11.41□□□□□ -0.58
HLA-DMB-262ENST00000498020 NEUROD1Q13562 356 aa11.4□□□□□ -0.58
HLA-DMB-262ENST00000498020 DNMBPQ6XZF7 1577 aa11.4□□□□□ -0.58
HLA-DMB-262ENST00000498020 FMN1Q68DA7 1419 aa11.4□□□□□ -0.59
HLA-DMB-262ENST00000498020 POLA1P09884 1462 aaPredicted RBP11.38□□□□□ -0.59
HLA-DMB-262ENST00000498020 C14orf37Q86TY3 774 aa11.38□□□□□ -0.59
HLA-DMB-262ENST00000498020 FHOD3Q2V2M9 1422 aa11.37□□□□□ -0.59
HLA-DMB-262ENST00000498020 ABCA10Q8WWZ4 1543 aa11.36□□□□□ -0.59
HLA-DMB-262ENST00000498020 MRC2Q9UBG0 1479 aa11.36□□□□□ -0.59
HLA-DMB-262ENST00000498020 GAPVD1Q14C86 1478 aa11.36□□□□□ -0.59
HLA-DMB-262ENST00000498020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.35□□□□□ -0.59
HLA-DMB-262ENST00000498020 ACIN1Q9UKV3 1341 aaKnown RBP11.34□□□□□ -0.59
HLA-DMB-262ENST00000498020 ZNF326Q5BKZ1 582 aaKnown RBP11.33□□□□□ -0.6
HLA-DMB-262ENST00000498020 A0A0G2JS52 829 aa11.33□□□□□ -0.6
HLA-DMB-262ENST00000498020 RRBP1Q9P2E9 1410 aaKnown RBP11.32□□□□□ -0.6
HLA-DMB-262ENST00000498020 SETD5Q9C0A6 1442 aa11.32□□□□□ -0.6
HLA-DMB-262ENST00000498020 DHX57Q6P158 1386 aaKnown RBP11.31□□□□□ -0.6
HLA-DMB-262ENST00000498020 RAB3GAP2Q9H2M9 1393 aa11.29□□□□□ -0.6
HLA-DMB-262ENST00000498020 PLEKHD1A6NEE1 506 aa11.29□□□□□ -0.6
HLA-DMB-262ENST00000498020 LRRC9Q6ZRR7 1453 aa11.29□□□□□ -0.6
HLA-DMB-262ENST00000498020 EFCAB5A4FU69 1503 aa11.28□□□□□ -0.6
HLA-DMB-262ENST00000498020 CASKIN1Q8WXD9 1431 aa11.28□□□□□ -0.6
HLA-DMB-262ENST00000498020 TONSLQ96HA7 1378 aa11.27□□□□□ -0.61
HLA-DMB-262ENST00000498020 SLC24A1O60721 1099 aa11.26□□□□□ -0.61
HLA-DMB-262ENST00000498020 MAP3K1Q13233 1512 aa11.26□□□□□ -0.61
HLA-DMB-262ENST00000498020 PRDM2Q13029 1718 aa11.26□□□□□ -0.61
HLA-DMB-262ENST00000498020 MIER1Q8N108 512 aa11.26□□□□□ -0.61
HLA-DMB-262ENST00000498020 TIMELESSQ9UNS1 1208 aa11.26□□□□□ -0.61
HLA-DMB-262ENST00000498020 URB2Q14146 1524 aaKnown RBP11.26□□□□□ -0.61
HLA-DMB-262ENST00000498020 CHIC2Q9UKJ5 165 aa11.25□□□□□ -0.61
HLA-DMB-262ENST00000498020 FYCO1Q9BQS8 1478 aa11.25□□□□□ -0.61
HLA-DMB-262ENST00000498020 TIAM1Q13009 1591 aa11.24□□□□□ -0.61
HLA-DMB-262ENST00000498020 PHLDB1Q86UU1 1377 aa11.24□□□□□ -0.61
HLA-DMB-262ENST00000498020 CUL7Q14999 1698 aa11.24□□□□□ -0.61
HLA-DMB-262ENST00000498020 GTF3C3Q9Y5Q9 886 aa11.23□□□□□ -0.61
HLA-DMB-262ENST00000498020 KIF21AQ7Z4S6 1674 aa11.23□□□□□ -0.61
HLA-DMB-262ENST00000498020 PPP1R15AO75807 674 aaPredicted RBP11.23□□□□□ -0.61
HLA-DMB-262ENST00000498020 TSPY4P0CV99 314 aa11.22□□□□□ -0.61
HLA-DMB-262ENST00000498020 TSPY10P0CW01 314 aa11.22□□□□□ -0.61
HLA-DMB-262ENST00000498020 RRP7BPQ9NSQ0 103 aa11.21□□□□□ -0.61
HLA-DMB-262ENST00000498020 AQRO60306 1485 aaKnown RBP eCLIP11.21□□□□□ -0.61
HLA-DMB-262ENST00000498020 GRIN2BQ13224 1484 aa11.21□□□□□ -0.62
HLA-DMB-262ENST00000498020 HAP1P54257 671 aaPredicted RBP11.21□□□□□ -0.62
HLA-DMB-262ENST00000498020 SIN3AQ96ST3 1273 aa11.2□□□□□ -0.62
HLA-DMB-262ENST00000498020 IFT140Q96RY7 1462 aa11.19□□□□□ -0.62
HLA-DMB-262ENST00000498020 MYT1Q01538 1121 aa11.19□□□□□ -0.62
HLA-DMB-262ENST00000498020 ANP32CO43423 234 aa11.18□□□□□ -0.62
HLA-DMB-262ENST00000498020 FGD6Q6ZV73 1430 aa11.17□□□□□ -0.62
HLA-DMB-262ENST00000498020 FAM69CQ0P6D2 419 aa11.16□□□□□ -0.62
HLA-DMB-262ENST00000498020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.16□□□□□ -0.62
HLA-DMB-262ENST00000498020 CARMIL2Q6F5E8 1435 aa11.16□□□□□ -0.62
HLA-DMB-262ENST00000498020 CFDP1Q9UEE9 299 aaPredicted RBP11.15□□□□□ -0.62
HLA-DMB-262ENST00000498020 DDX10Q13206 875 aaKnown RBP11.15□□□□□ -0.62
HLA-DMB-262ENST00000498020 CCDC18Q5T9S5 1454 aa11.15□□□□□ -0.62
HLA-DMB-262ENST00000498020 PCF11O94913 1555 aaKnown RBP11.15□□□□□ -0.62
HLA-DMB-262ENST00000498020 WDR62O43379 1518 aa11.14□□□□□ -0.63
HLA-DMB-262ENST00000498020 MYOM3Q5VTT5 1437 aa11.14□□□□□ -0.63
HLA-DMB-262ENST00000498020 LMOD2Q6P5Q4 547 aa11.14□□□□□ -0.63
HLA-DMB-262ENST00000498020 ZBTB7CA1YPR0 619 aa11.13□□□□□ -0.63
HLA-DMB-262ENST00000498020 NCOA2Q15596 1464 aa11.12□□□□□ -0.63
HLA-DMB-262ENST00000498020 JPH4Q96JJ6 628 aa11.11□□□□□ -0.63
HLA-DMB-262ENST00000498020 GGT6Q6P531 493 aa11.1□□□□□ -0.63
HLA-DMB-262ENST00000498020 DAXXQ9UER7 740 aaPredicted RBP11.09□□□□□ -0.63
HLA-DMB-262ENST00000498020 THOC2Q8NI27 1593 aaKnown RBP11.09□□□□□ -0.63
HLA-DMB-262ENST00000498020 EHBP1L1Q8N3D4 1523 aa11.08□□□□□ -0.64
HLA-DMB-262ENST00000498020 KIAA0586Q9BVV6 1533 aa11.07□□□□□ -0.64
HLA-DMB-262ENST00000498020 IQGAP2Q13576 1575 aa11.07□□□□□ -0.64
HLA-DMB-262ENST00000498020 ZNF608Q9ULD9 1512 aaPredicted RBP11.07□□□□□ -0.64
HLA-DMB-262ENST00000498020 HIRIP3Q9BW71 556 aaPredicted RBP11.06□□□□□ -0.64
HLA-DMB-262ENST00000498020 EIF4G2P78344 907 aaKnown RBP eCLIP11.06□□□□□ -0.64
HLA-DMB-262ENST00000498020 SNAPC4Q5SXM2 1469 aa11.05□□□□□ -0.64
HLA-DMB-262ENST00000498020 UACAQ9BZF9 1416 aa11.05□□□□□ -0.64
HLA-DMB-262ENST00000498020 ABCA5Q8WWZ7 1642 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms