RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 P3H3Q8IVL6 736 aa12.6□□□□□ -0.39
USP54-215ENST00000497106 MAGI1Q96QZ7 1491 aaPredicted RBP12.6□□□□□ -0.39
USP54-215ENST00000497106 CARMIL2Q6F5E8 1435 aa12.6□□□□□ -0.39
USP54-215ENST00000497106 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.59□□□□□ -0.39
USP54-215ENST00000497106 HNRNPUL2Q1KMD3 747 aaKnown RBP12.59□□□□□ -0.39
USP54-215ENST00000497106 PPARGC1BQ86YN6 1023 aaKnown RBP12.59□□□□□ -0.39
USP54-215ENST00000497106 ABCA5Q8WWZ7 1642 aa12.56□□□□□ -0.4
USP54-215ENST00000497106 SNAPC4Q5SXM2 1469 aa12.56□□□□□ -0.4
USP54-215ENST00000497106 TARBP1Q13395 1621 aaKnown RBP12.53□□□□□ -0.4
USP54-215ENST00000497106 SYNJ2O15056 1496 aa12.53□□□□□ -0.4
USP54-215ENST00000497106 THOC2Q8NI27 1593 aaKnown RBP12.53□□□□□ -0.4
USP54-215ENST00000497106 PELP1Q8IZL8 1130 aaKnown RBP12.53□□□□□ -0.4
USP54-215ENST00000497106 MTUS2Q5JR59 1369 aa12.5□□□□□ -0.41
USP54-215ENST00000497106 ADAMTS12P58397 1594 aa12.5□□□□□ -0.41
USP54-215ENST00000497106 KIAA0586Q9BVV6 1533 aa12.49□□□□□ -0.41
USP54-215ENST00000497106 ARHGAP35Q9NRY4 1499 aa12.48□□□□□ -0.41
USP54-215ENST00000497106 ZNF608Q9ULD9 1512 aaPredicted RBP12.48□□□□□ -0.41
USP54-215ENST00000497106 GRIN2AQ12879 1464 aa12.48□□□□□ -0.41
USP54-215ENST00000497106 PBRM1Q86U86 1689 aa12.48□□□□□ -0.41
USP54-215ENST00000497106 CCER1Q8TC90 406 aaPredicted RBP12.48□□□□□ -0.41
USP54-215ENST00000497106 EIF4G3O43432 1585 aaKnown RBP12.47□□□□□ -0.41
USP54-215ENST00000497106 FHOD3Q2V2M9 1422 aa12.47□□□□□ -0.41
USP54-215ENST00000497106 IQGAP2Q13576 1575 aa12.47□□□□□ -0.41
USP54-215ENST00000497106 ARAP1Q96P48 1450 aa12.45□□□□□ -0.42
USP54-215ENST00000497106 FYCO1Q9BQS8 1478 aa12.44□□□□□ -0.42
USP54-215ENST00000497106 CTTNBP2Q8WZ74 1663 aa12.44□□□□□ -0.42
USP54-215ENST00000497106 CASKIN1Q8WXD9 1431 aa12.44□□□□□ -0.42
USP54-215ENST00000497106 JPH4Q96JJ6 628 aa12.43□□□□□ -0.42
USP54-215ENST00000497106 CCDC18Q5T9S5 1454 aa12.43□□□□□ -0.42
USP54-215ENST00000497106 FAM50AQ14320 339 aaKnown RBP12.43□□□□□ -0.42
USP54-215ENST00000497106 MYT1Q01538 1121 aa12.41□□□□□ -0.42
USP54-215ENST00000497106 ACIN1Q9UKV3 1341 aaKnown RBP12.4□□□□□ -0.42
USP54-215ENST00000497106 MAP3K1Q13233 1512 aa12.4□□□□□ -0.42
USP54-215ENST00000497106 PLEKHD1A6NEE1 506 aa12.38□□□□□ -0.43
USP54-215ENST00000497106 NPM1P06748 294 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP54-215ENST00000497106 HRCP23327 699 aa12.37□□□□□ -0.43
USP54-215ENST00000497106 UGGT2Q9NYU1 1516 aa12.36□□□□□ -0.43
USP54-215ENST00000497106 ITGAEP38570 1179 aa12.36□□□□□ -0.43
USP54-215ENST00000497106 HECW1Q76N89 1606 aa12.36□□□□□ -0.43
USP54-215ENST00000497106 PTPRGP23470 1445 aa12.34□□□□□ -0.43
USP54-215ENST00000497106 CCNB3Q8WWL7 1395 aa12.34□□□□□ -0.43
USP54-215ENST00000497106 NUP160Q12769 1436 aa12.34□□□□□ -0.43
USP54-215ENST00000497106 OSCARQ8IYS5 282 aa12.33□□□□□ -0.44
USP54-215ENST00000497106 ARID3CA6NKF2 412 aa12.31□□□□□ -0.44
USP54-215ENST00000497106 TIAM1Q13009 1591 aa12.31□□□□□ -0.44
USP54-215ENST00000497106 PRG4Q92954 1404 aaPredicted RBP12.31□□□□□ -0.44
USP54-215ENST00000497106 LRRC9Q6ZRR7 1453 aa12.31□□□□□ -0.44
USP54-215ENST00000497106 EHBP1L1Q8N3D4 1523 aa12.29□□□□□ -0.44
USP54-215ENST00000497106 KANK4Q5T7N3 995 aaPredicted RBP12.29□□□□□ -0.44
USP54-215ENST00000497106 PCF11O94913 1555 aaKnown RBP12.28□□□□□ -0.44
USP54-215ENST00000497106 SAMD9Q5K651 1589 aa12.28□□□□□ -0.44
USP54-215ENST00000497106 KIAA0556O60303 1618 aa12.26□□□□□ -0.45
USP54-215ENST00000497106 CFDP1Q9UEE9 299 aaPredicted RBP12.23□□□□□ -0.45
USP54-215ENST00000497106 CEP170Q5SW79 1584 aa12.22□□□□□ -0.45
USP54-215ENST00000497106 EPRSP07814 1512 aaKnown RBP12.22□□□□□ -0.45
USP54-215ENST00000497106 RRBP1Q9P2E9 1410 aaKnown RBP12.22□□□□□ -0.45
USP54-215ENST00000497106 ZNF777Q9ULD5 760 aaPredicted RBP12.21□□□□□ -0.45
USP54-215ENST00000497106 MYOM3Q5VTT5 1437 aa12.2□□□□□ -0.46
USP54-215ENST00000497106 CFAP43Q8NDM7 1665 aa12.2□□□□□ -0.46
USP54-215ENST00000497106 TSPY4P0CV99 314 aa12.19□□□□□ -0.46
USP54-215ENST00000497106 TSPY10P0CW01 314 aa12.19□□□□□ -0.46
USP54-215ENST00000497106 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP54-215ENST00000497106 UACAQ9BZF9 1416 aa12.19□□□□□ -0.46
USP54-215ENST00000497106 SUPT6HQ7KZ85 1726 aaKnown RBP12.19□□□□□ -0.46
USP54-215ENST00000497106 CLSPNQ9HAW4 1339 aa12.19□□□□□ -0.46
USP54-215ENST00000497106 RAPGEF6Q8TEU7 1601 aa12.19□□□□□ -0.46
USP54-215ENST00000497106 NCOA2Q15596 1464 aa12.18□□□□□ -0.46
USP54-215ENST00000497106 MYT1LQ9UL68 1186 aa12.18□□□□□ -0.46
USP54-215ENST00000497106 TROQ12816 1431 aaPredicted RBP12.18□□□□□ -0.46
USP54-215ENST00000497106 DISP1Q96F81 1524 aa12.18□□□□□ -0.46
USP54-215ENST00000497106 FGD6Q6ZV73 1430 aa12.17□□□□□ -0.46
USP54-215ENST00000497106 MIA2Q96PC5 1412 aa12.17□□□□□ -0.46
USP54-215ENST00000497106 TRIM52Q96A61 297 aa12.17□□□□□ -0.46
USP54-215ENST00000497106 RSPH4AQ5TD94 716 aa12.16□□□□□ -0.46
USP54-215ENST00000497106 SETD5Q9C0A6 1442 aa12.14□□□□□ -0.47
USP54-215ENST00000497106 PHLDB1Q86UU1 1377 aa12.13□□□□□ -0.47
USP54-215ENST00000497106 KCNH8Q96L42 1107 aa12.13□□□□□ -0.47
USP54-215ENST00000497106 CHD1O14646 1710 aa12.13□□□□□ -0.47
USP54-215ENST00000497106 PLB1Q6P1J6 1458 aa12.11□□□□□ -0.47
USP54-215ENST00000497106 CDK13Q14004 1512 aaKnown RBP12.1□□□□□ -0.47
USP54-215ENST00000497106 EFCAB2Q5VUJ9 269 aa12.1□□□□□ -0.47
USP54-215ENST00000497106 NUP153P49790 1475 aaKnown RBP12.1□□□□□ -0.47
USP54-215ENST00000497106 KIF14Q15058 1648 aa12.09□□□□□ -0.47
USP54-215ENST00000497106 PLEKHH2Q8IVE3 1493 aa12.08□□□□□ -0.48
USP54-215ENST00000497106 CHIC2Q9UKJ5 165 aa12.07□□□□□ -0.48
USP54-215ENST00000497106 ANKRD30AQ9BXX3 1397 aa12.07□□□□□ -0.48
USP54-215ENST00000497106 ABCC2Q92887 1545 aa12.06□□□□□ -0.48
USP54-215ENST00000497106 ABCA8O94911 1581 aa12.04□□□□□ -0.48
USP54-215ENST00000497106 RRP7BPQ9NSQ0 103 aa12.04□□□□□ -0.48
USP54-215ENST00000497106 UHRF1BP1LA0JNW5 1464 aa12.04□□□□□ -0.48
USP54-215ENST00000497106 RAB3GAP2Q9H2M9 1393 aa12.03□□□□□ -0.48
USP54-215ENST00000497106 ATP10BO94823 1461 aa12.03□□□□□ -0.48
USP54-215ENST00000497106 ITSN2Q9NZM3 1697 aa12.03□□□□□ -0.48
USP54-215ENST00000497106 CLASP1Q7Z460 1538 aa12.03□□□□□ -0.48
USP54-215ENST00000497106 TIMELESSQ9UNS1 1208 aa12.01□□□□□ -0.49
USP54-215ENST00000497106 PTPN23Q9H3S7 1636 aa12.01□□□□□ -0.49
USP54-215ENST00000497106 SHROOM2Q13796 1616 aa12□□□□□ -0.49
USP54-215ENST00000497106 TONSLQ96HA7 1378 aa11.99□□□□□ -0.49
USP54-215ENST00000497106 TCOF1Q13428 1488 aaKnown RBP11.99□□□□□ -0.49
USP54-215ENST00000497106 ARHGAP5Q13017 1502 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms