RNA–Protein interactions for RNA: ENST00000496026.1

HDAC9-226, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 860 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-226ENST00000496026 KIF21BO75037 1637 aa24.21■■□□□ 1.47
HDAC9-226ENST00000496026 JPH4Q96JJ6 628 aa24.17■■□□□ 1.46
HDAC9-226ENST00000496026 GOLGA3Q08378 1498 aa24.15■■□□□ 1.46
HDAC9-226ENST00000496026 IQGAP2Q13576 1575 aa24.13■■□□□ 1.45
HDAC9-226ENST00000496026 ARHGEF11O15085 1522 aa24.12■■□□□ 1.45
HDAC9-226ENST00000496026 UBTFP17480 764 aaKnown RBP24.12■■□□□ 1.45
HDAC9-226ENST00000496026 SHROOM2Q13796 1616 aa24.1■■□□□ 1.45
HDAC9-226ENST00000496026 PRG4Q92954 1404 aaPredicted RBP24.09■■□□□ 1.45
HDAC9-226ENST00000496026 CTTNBP2Q8WZ74 1663 aa24.08■■□□□ 1.45
HDAC9-226ENST00000496026 RIMBP3CA6NJZ7 1639 aa24.06■■□□□ 1.44
HDAC9-226ENST00000496026 RIMBP3BA6NNM3 1639 aa24.06■■□□□ 1.44
HDAC9-226ENST00000496026 RIMBP3Q9UFD9 1639 aa24.06■■□□□ 1.44
HDAC9-226ENST00000496026 ERCC6L2Q5T890 1561 aa24.01■■□□□ 1.43
HDAC9-226ENST00000496026 UGGT2Q9NYU1 1516 aa24■■□□□ 1.43
HDAC9-226ENST00000496026 CARMIL2Q6F5E8 1435 aa24■■□□□ 1.43
HDAC9-226ENST00000496026 RANGAP1P46060 587 aaPredicted RBP23.99■■□□□ 1.43
HDAC9-226ENST00000496026 ARAP1Q96P48 1450 aa23.94■■□□□ 1.42
HDAC9-226ENST00000496026 CYB5RLQ6IPT4 315 aa23.94■■□□□ 1.42
HDAC9-226ENST00000496026 DISP1Q96F81 1524 aa23.93■■□□□ 1.42
HDAC9-226ENST00000496026 LOC105371045A0A1W2PR82 267 aa23.91■■□□□ 1.42
HDAC9-226ENST00000496026 TNIKQ9UKE5 1360 aa23.9■■□□□ 1.42
HDAC9-226ENST00000496026 TTBK1Q5TCY1 1321 aaPredicted RBP23.89■■□□□ 1.42
HDAC9-226ENST00000496026 KIAA0556O60303 1618 aa23.88■■□□□ 1.41
HDAC9-226ENST00000496026 P3H3Q8IVL6 736 aa23.87■■□□□ 1.41
HDAC9-226ENST00000496026 PTPRGP23470 1445 aa23.85■■□□□ 1.41
HDAC9-226ENST00000496026 SAMD9Q5K651 1589 aa23.81■■□□□ 1.4
HDAC9-226ENST00000496026 EFCAB5A4FU69 1503 aa23.79■■□□□ 1.4
HDAC9-226ENST00000496026 FHOD3Q2V2M9 1422 aa23.76■■□□□ 1.39
HDAC9-226ENST00000496026 CLIP1P30622 1438 aa23.73■■□□□ 1.39
HDAC9-226ENST00000496026 ARHGAP35Q9NRY4 1499 aa23.73■■□□□ 1.39
HDAC9-226ENST00000496026 CEP162Q5TB80 1403 aa23.69■■□□□ 1.38
HDAC9-226ENST00000496026 UACAQ9BZF9 1416 aa23.68■■□□□ 1.38
HDAC9-226ENST00000496026 PLB1Q6P1J6 1458 aa23.65■■□□□ 1.38
HDAC9-226ENST00000496026 NPM1P06748 294 aaKnown RBP eCLIP23.63■■□□□ 1.37
HDAC9-226ENST00000496026 ADCY10Q96PN6 1610 aa23.62■■□□□ 1.37
HDAC9-226ENST00000496026 UHRF1BP1LA0JNW5 1464 aa23.62■■□□□ 1.37
HDAC9-226ENST00000496026 FMN1Q68DA7 1419 aa23.61■■□□□ 1.37
HDAC9-226ENST00000496026 ABCC2Q92887 1545 aa23.61■■□□□ 1.37
HDAC9-226ENST00000496026 ABCA8O94911 1581 aa23.6■■□□□ 1.37
HDAC9-226ENST00000496026 RAPGEF6Q8TEU7 1601 aa23.55■■□□□ 1.36
HDAC9-226ENST00000496026 ATP1B4Q9UN42 357 aaPredicted RBP23.54■■□□□ 1.36
HDAC9-226ENST00000496026 ARID3CA6NKF2 412 aa23.52■■□□□ 1.36
HDAC9-226ENST00000496026 KDM5BQ9UGL1 1544 aa23.5■■□□□ 1.35
HDAC9-226ENST00000496026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.47■■□□□ 1.35
HDAC9-226ENST00000496026 HNRNPUL2Q1KMD3 747 aaKnown RBP23.47■■□□□ 1.35
HDAC9-226ENST00000496026 NUP153P49790 1475 aaKnown RBP23.47■■□□□ 1.35
HDAC9-226ENST00000496026 ZCCHC11Q5TAX3 1644 aaKnown RBP23.44■■□□□ 1.34
HDAC9-226ENST00000496026 ATP10BO94823 1461 aa23.44■■□□□ 1.34
HDAC9-226ENST00000496026 CASKIN1Q8WXD9 1431 aa23.44■■□□□ 1.34
HDAC9-226ENST00000496026 HECW1Q76N89 1606 aa23.43■■□□□ 1.34
HDAC9-226ENST00000496026 PCF11O94913 1555 aaKnown RBP23.42■■□□□ 1.34
HDAC9-226ENST00000496026 MAPKBP1O60336 1514 aa23.42■■□□□ 1.34
HDAC9-226ENST00000496026 FYCO1Q9BQS8 1478 aa23.4■■□□□ 1.34
HDAC9-226ENST00000496026 ASXL2Q76L83 1435 aa23.4■■□□□ 1.34
HDAC9-226ENST00000496026 TRHP20396 242 aaPredicted RBP23.39■■□□□ 1.33
HDAC9-226ENST00000496026 VPS8Q8N3P4 1428 aa23.38■■□□□ 1.33
HDAC9-226ENST00000496026 EPRSP07814 1512 aaKnown RBP23.36■■□□□ 1.33
HDAC9-226ENST00000496026 CDK13Q14004 1512 aaKnown RBP23.36■■□□□ 1.33
HDAC9-226ENST00000496026 WDR7Q9Y4E6 1490 aa23.33■■□□□ 1.33
HDAC9-226ENST00000496026 CCDC18Q5T9S5 1454 aa23.32■■□□□ 1.32
HDAC9-226ENST00000496026 PLEKHD1A6NEE1 506 aa23.32■■□□□ 1.32
HDAC9-226ENST00000496026 CDK11AQ9UQ88 783 aaPredicted RBP23.31■■□□□ 1.32
HDAC9-226ENST00000496026 KCNH8Q96L42 1107 aa23.3■■□□□ 1.32
HDAC9-226ENST00000496026 FAM69CQ0P6D2 419 aa23.29■■□□□ 1.32
HDAC9-226ENST00000496026 ABCC10Q5T3U5 1492 aa23.29■■□□□ 1.32
HDAC9-226ENST00000496026 LRRIQ1Q96JM4 1722 aa23.24■■□□□ 1.31
HDAC9-226ENST00000496026 DIP2BQ9P265 1576 aa23.23■■□□□ 1.31
HDAC9-226ENST00000496026 APLP2Q06481 763 aa23.2■■□□□ 1.3
HDAC9-226ENST00000496026 TROQ12816 1431 aaPredicted RBP23.18■■□□□ 1.3
HDAC9-226ENST00000496026 GLI2P10070 1586 aa23.17■■□□□ 1.3
HDAC9-226ENST00000496026 KIF13AQ9H1H9 1805 aa23.15■■□□□ 1.3
HDAC9-226ENST00000496026 MTUS2Q5JR59 1369 aa23.14■■□□□ 1.3
HDAC9-226ENST00000496026 TIAM1Q13009 1591 aa23.13■■□□□ 1.29
HDAC9-226ENST00000496026 MAGI3Q5TCQ9 1506 aa23.13■■□□□ 1.29
HDAC9-226ENST00000496026 CFAP43Q8NDM7 1665 aa23.11■■□□□ 1.29
HDAC9-226ENST00000496026 CD109Q6YHK3 1445 aa23.1■■□□□ 1.29
HDAC9-226ENST00000496026 MAP3K1Q13233 1512 aa23.1■■□□□ 1.29
HDAC9-226ENST00000496026 KIF14Q15058 1648 aa23.09■■□□□ 1.29
HDAC9-226ENST00000496026 ABCA9Q8IUA7 1624 aa23.07■■□□□ 1.28
HDAC9-226ENST00000496026 MAP3K4Q9Y6R4 1608 aa23.07■■□□□ 1.28
HDAC9-226ENST00000496026 EHBP1L1Q8N3D4 1523 aa23.07■■□□□ 1.28
HDAC9-226ENST00000496026 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.07■■□□□ 1.28
HDAC9-226ENST00000496026 KANK4Q5T7N3 995 aaPredicted RBP23.05■■□□□ 1.28
HDAC9-226ENST00000496026 LRRC9Q6ZRR7 1453 aa23.05■■□□□ 1.28
HDAC9-226ENST00000496026 TTC37Q6PGP7 1564 aa23.02■■□□□ 1.28
HDAC9-226ENST00000496026 TSPOAP1O95153 1857 aa23.01■■□□□ 1.27
HDAC9-226ENST00000496026 TEX14Q8IWB6 1497 aa23■■□□□ 1.27
HDAC9-226ENST00000496026 CCNB3Q8WWL7 1395 aa22.96■■□□□ 1.27
HDAC9-226ENST00000496026 PLCH2O75038 1416 aa22.96■■□□□ 1.27
HDAC9-226ENST00000496026 SUPT6HQ7KZ85 1726 aaKnown RBP22.94■■□□□ 1.26
HDAC9-226ENST00000496026 PPRC1Q5VV67 1664 aaKnown RBP22.94■■□□□ 1.26
HDAC9-226ENST00000496026 NCOA2Q15596 1464 aa22.94■■□□□ 1.26
HDAC9-226ENST00000496026 MYO5CQ9NQX4 1742 aa22.91■■□□□ 1.26
HDAC9-226ENST00000496026 EFCAB2Q5VUJ9 269 aa22.91■■□□□ 1.26
HDAC9-226ENST00000496026 FANCAO15360 1455 aa22.91■■□□□ 1.26
HDAC9-226ENST00000496026 ARHGAP5Q13017 1502 aa22.9■■□□□ 1.26
HDAC9-226ENST00000496026 GPATCH8Q9UKJ3 1502 aaKnown RBP22.89■■□□□ 1.26
HDAC9-226ENST00000496026 PPARGC1BQ86YN6 1023 aaKnown RBP22.89■■□□□ 1.25
HDAC9-226ENST00000496026 ARAP3Q8WWN8 1544 aa22.88■■□□□ 1.25
HDAC9-226ENST00000496026 NEO1Q92859 1461 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms