RNA–Protein interactions for RNA: ENST00000495522.1

CALD1-222, Transcript of caldesmon 1, humanhuman

TSL 5 BASIC

Gene CALD1, Length 2,199 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-222ENST00000495522 ZNF316A6NFI3 1004 aaPredicted RBP22.81■■□□□ 1.24
CALD1-222ENST00000495522 CCNB3Q8WWL7 1395 aa22.81■■□□□ 1.24
CALD1-222ENST00000495522 CLSPNQ9HAW4 1339 aa22.78■■□□□ 1.24
CALD1-222ENST00000495522 EFCAB5A4FU69 1503 aa22.77■■□□□ 1.24
CALD1-222ENST00000495522 CTTNBP2Q8WZ74 1663 aa22.75■■□□□ 1.23
CALD1-222ENST00000495522 LRRC9Q6ZRR7 1453 aa22.74■■□□□ 1.23
CALD1-222ENST00000495522 DHX57Q6P158 1386 aaKnown RBP22.74■■□□□ 1.23
CALD1-222ENST00000495522 PCF11O94913 1555 aaKnown RBP22.73■■□□□ 1.23
CALD1-222ENST00000495522 ABCA5Q8WWZ7 1642 aa22.73■■□□□ 1.23
CALD1-222ENST00000495522 CFAP43Q8NDM7 1665 aa22.73■■□□□ 1.23
CALD1-222ENST00000495522 FHOD3Q2V2M9 1422 aa22.68■■□□□ 1.22
CALD1-222ENST00000495522 FYCO1Q9BQS8 1478 aa22.68■■□□□ 1.22
CALD1-222ENST00000495522 P3H3Q8IVL6 736 aa22.67■■□□□ 1.22
CALD1-222ENST00000495522 GAPVD1Q14C86 1478 aa22.67■■□□□ 1.22
CALD1-222ENST00000495522 AQRO60306 1485 aaKnown RBP eCLIP22.66■■□□□ 1.225e-16■■□□□ 11.9
CALD1-222ENST00000495522 ERCC6Q03468 1493 aa22.66■■□□□ 1.22
CALD1-222ENST00000495522 TDRD9Q8NDG6 1382 aaKnown RBP22.66■■□□□ 1.22
CALD1-222ENST00000495522 CASKIN1Q8WXD9 1431 aa22.64■■□□□ 1.21
CALD1-222ENST00000495522 MRC2Q9UBG0 1479 aa22.62■■□□□ 1.21
CALD1-222ENST00000495522 PHLDB1Q86UU1 1377 aa22.61■■□□□ 1.21
CALD1-222ENST00000495522 FMN1Q68DA7 1419 aa22.59■■□□□ 1.21
CALD1-222ENST00000495522 TARBP1Q13395 1621 aaKnown RBP22.58■■□□□ 1.21
CALD1-222ENST00000495522 ITGAEP38570 1179 aa22.58■■□□□ 1.21
CALD1-222ENST00000495522 ATP1B4Q9UN42 357 aaPredicted RBP22.57■■□□□ 1.2
CALD1-222ENST00000495522 SAMD9Q5K651 1589 aa22.56■■□□□ 1.2
CALD1-222ENST00000495522 SCAF1Q9H7N4 1312 aaKnown RBP22.52■■□□□ 1.2
CALD1-222ENST00000495522 SNAPC4Q5SXM2 1469 aa22.52■■□□□ 1.2
CALD1-222ENST00000495522 RAB3GAP2Q9H2M9 1393 aa22.52■■□□□ 1.2
CALD1-222ENST00000495522 WDR62O43379 1518 aa22.51■■□□□ 1.19
CALD1-222ENST00000495522 THOC2Q8NI27 1593 aaKnown RBP22.5■■□□□ 1.19
CALD1-222ENST00000495522 ACIN1Q9UKV3 1341 aaKnown RBP22.5■■□□□ 1.19
CALD1-222ENST00000495522 SETD5Q9C0A6 1442 aa22.49■■□□□ 1.19
CALD1-222ENST00000495522 CENPBP07199 599 aaPredicted RBP22.48■■□□□ 1.19
CALD1-222ENST00000495522 FAM50AQ14320 339 aaKnown RBP22.47■■□□□ 1.19
CALD1-222ENST00000495522 PBRM1Q86U86 1689 aa22.47■■□□□ 1.19
CALD1-222ENST00000495522 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.46■■□□□ 1.19
CALD1-222ENST00000495522 NEUROD1Q13562 356 aa22.42■■□□□ 1.18
CALD1-222ENST00000495522 GRIN2BQ13224 1484 aa22.41■■□□□ 1.18
CALD1-222ENST00000495522 MAPKBP1O60336 1514 aa22.4■■□□□ 1.18
CALD1-222ENST00000495522 MTUS2Q5JR59 1369 aa22.39■■□□□ 1.17
CALD1-222ENST00000495522 ADAMTS12P58397 1594 aa22.39■■□□□ 1.17
CALD1-222ENST00000495522 LRRIQ1Q96JM4 1722 aa22.38■■□□□ 1.17
CALD1-222ENST00000495522 FGD6Q6ZV73 1430 aa22.37■■□□□ 1.17
CALD1-222ENST00000495522 MIER1Q8N108 512 aa22.37■■□□□ 1.17
CALD1-222ENST00000495522 IQGAP2Q13576 1575 aa22.34■■□□□ 1.17
CALD1-222ENST00000495522 IFT140Q96RY7 1462 aa22.32■■□□□ 1.16
CALD1-222ENST00000495522 EHBP1L1Q8N3D4 1523 aa22.31■■□□□ 1.16
CALD1-222ENST00000495522 SUPT6HQ7KZ85 1726 aaKnown RBP22.3■■□□□ 1.16
CALD1-222ENST00000495522 NCOA2Q15596 1464 aa22.29■■□□□ 1.16
CALD1-222ENST00000495522 CCDC18Q5T9S5 1454 aa22.29■■□□□ 1.16
CALD1-222ENST00000495522 MYOM3Q5VTT5 1437 aa22.27■■□□□ 1.16
CALD1-222ENST00000495522 HECW1Q76N89 1606 aa22.26■■□□□ 1.15
CALD1-222ENST00000495522 ZNF608Q9ULD9 1512 aaPredicted RBP22.23■■□□□ 1.15
CALD1-222ENST00000495522 UGGT2Q9NYU1 1516 aa22.22■■□□□ 1.15
CALD1-222ENST00000495522 ARHGEF11O15085 1522 aa22.22■■□□□ 1.15
CALD1-222ENST00000495522 MAGI3Q5TCQ9 1506 aa22.2■■□□□ 1.14
CALD1-222ENST00000495522 YTHDC1Q96MU7 727 aaKnown RBP22.19■■□□□ 1.14
CALD1-222ENST00000495522 HFM1A2PYH4 1435 aa22.19■■□□□ 1.14
CALD1-222ENST00000495522 PTPRKQ15262 1439 aa22.18■■□□□ 1.14
CALD1-222ENST00000495522 PTPN23Q9H3S7 1636 aa22.17■■□□□ 1.14
CALD1-222ENST00000495522 EPRSP07814 1512 aaKnown RBP22.17■■□□□ 1.14
CALD1-222ENST00000495522 TIMELESSQ9UNS1 1208 aa22.17■■□□□ 1.14
CALD1-222ENST00000495522 GTF3C3Q9Y5Q9 886 aa22.16■■□□□ 1.14
CALD1-222ENST00000495522 SIN3AQ96ST3 1273 aa22.15■■□□□ 1.14
CALD1-222ENST00000495522 KIAA0586Q9BVV6 1533 aa22.14■■□□□ 1.14
CALD1-222ENST00000495522 EIF4G3O43432 1585 aaKnown RBP22.14■■□□□ 1.13
CALD1-222ENST00000495522 TCOF1Q13428 1488 aaKnown RBP22.11■■□□□ 1.13
CALD1-222ENST00000495522 NAIPQ13075 1403 aa22.1■■□□□ 1.13
CALD1-222ENST00000495522 UACAQ9BZF9 1416 aa22.1■■□□□ 1.13
CALD1-222ENST00000495522 GRIN2AQ12879 1464 aa22.1■■□□□ 1.13
CALD1-222ENST00000495522 KIAA0556O60303 1618 aa22.1■■□□□ 1.13
CALD1-222ENST00000495522 CDK13Q14004 1512 aaKnown RBP22.09■■□□□ 1.13
CALD1-222ENST00000495522 DISP1Q96F81 1524 aa22.07■■□□□ 1.12
CALD1-222ENST00000495522 MIA2Q96PC5 1412 aa22.05■■□□□ 1.12
CALD1-222ENST00000495522 MAGI1Q96QZ7 1491 aaPredicted RBP22.04■■□□□ 1.12
CALD1-222ENST00000495522 GCC2Q8IWJ2 1684 aa22.01■■□□□ 1.11
CALD1-222ENST00000495522 PPP1R15AO75807 674 aaPredicted RBP22.01■■□□□ 1.11
CALD1-222ENST00000495522 AKNAQ7Z591 1439 aa22■■□□□ 1.11
CALD1-222ENST00000495522 RAPGEF6Q8TEU7 1601 aa21.99■■□□□ 1.11
CALD1-222ENST00000495522 SYNJ2O15056 1496 aa21.98■■□□□ 1.11
CALD1-222ENST00000495522 NUP153P49790 1475 aaKnown RBP21.97■■□□□ 1.11
CALD1-222ENST00000495522 TONSLQ96HA7 1378 aa21.97■■□□□ 1.11
CALD1-222ENST00000495522 ARID3CA6NKF2 412 aa21.96■■□□□ 1.11
CALD1-222ENST00000495522 CEP170Q5SW79 1584 aa21.94■■□□□ 1.1
CALD1-222ENST00000495522 CHMP7Q8WUX9 453 aaPredicted RBP21.94■■□□□ 1.1
CALD1-222ENST00000495522 RRP7BPQ9NSQ0 103 aa21.93■■□□□ 1.1
CALD1-222ENST00000495522 CHIC2Q9UKJ5 165 aa21.92■■□□□ 1.1
CALD1-222ENST00000495522 CDK11AQ9UQ88 783 aaPredicted RBP21.91■■□□□ 1.1
CALD1-222ENST00000495522 NUP160Q12769 1436 aa21.87■■□□□ 1.09
CALD1-222ENST00000495522 KDM6BO15054 1643 aa21.86■■□□□ 1.09
CALD1-222ENST00000495522 DAPK1P53355 1430 aa21.85■■□□□ 1.09
CALD1-222ENST00000495522 DNMT1P26358 1616 aaKnown RBP21.85■■□□□ 1.09
CALD1-222ENST00000495522 ROCK1Q13464 1354 aa21.85■■□□□ 1.09
CALD1-222ENST00000495522 CARMIL2Q6F5E8 1435 aa21.85■■□□□ 1.09
CALD1-222ENST00000495522 FBLN2P98095 1184 aa21.83■■□□□ 1.09
CALD1-222ENST00000495522 TROQ12816 1431 aaPredicted RBP21.83■■□□□ 1.09
CALD1-222ENST00000495522 DDX10Q13206 875 aaKnown RBP21.82■■□□□ 1.08
CALD1-222ENST00000495522 TRIM52Q96A61 297 aa21.82■■□□□ 1.08
CALD1-222ENST00000495522 DENND4BO75064 1496 aaPredicted RBP21.82■■□□□ 1.08
CALD1-222ENST00000495522 PLB1Q6P1J6 1458 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms