RNA–Protein interactions for RNA: ENST00000495394.1

RPSA-209, Transcript of ribosomal protein SA, humanhuman

TSL 1 (best)

Gene RPSA, Length 2,058 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPSA-209ENST00000495394 RSPH6AQ9H0K4 717 aa13.6□□□□□ -0.23
RPSA-209ENST00000495394 HMGB1P09429 215 aaKnown RBP13.59□□□□□ -0.23
RPSA-209ENST00000495394 PHF23Q9BUL5 403 aaPredicted RBP13.59□□□□□ -0.23
RPSA-209ENST00000495394 BCCIPQ9P287 314 aaKnown RBP eCLIP13.59□□□□□ -0.23
RPSA-209ENST00000495394 ZEB1P37275 1124 aaPredicted RBP13.58□□□□□ -0.24
RPSA-209ENST00000495394 TRIM41Q8WV44 630 aa13.57□□□□□ -0.24
RPSA-209ENST00000495394 CCDC136Q96JN2 1154 aa13.57□□□□□ -0.24
RPSA-209ENST00000495394 IGSF3O75054 1194 aa13.55□□□□□ -0.24
RPSA-209ENST00000495394 VSIG10Q8N0Z9 540 aa13.55□□□□□ -0.24
RPSA-209ENST00000495394 SALL2Q9Y467 1007 aaPredicted RBP13.55□□□□□ -0.24
RPSA-209ENST00000495394 CLSPNQ9HAW4 1339 aa13.54□□□□□ -0.24
RPSA-209ENST00000495394 PPP6R1Q9UPN7 881 aa13.53□□□□□ -0.24
RPSA-209ENST00000495394 ACIN1Q9UKV3 1341 aaKnown RBP13.53□□□□□ -0.24
RPSA-209ENST00000495394 CCDC88BA6NC98 1476 aa13.52□□□□□ -0.24
RPSA-209ENST00000495394 LAMC3Q9Y6N6 1575 aa13.52□□□□□ -0.25
RPSA-209ENST00000495394 A0A0U1RQG5 324 aaPredicted RBP13.49□□□□□ -0.25
RPSA-209ENST00000495394 PAXIP1Q6ZW49 1069 aaPredicted RBP13.49□□□□□ -0.25
RPSA-209ENST00000495394 PRDM2Q13029 1718 aa13.47□□□□□ -0.25
RPSA-209ENST00000495394 CADPSQ9ULU8 1353 aa13.46□□□□□ -0.25
RPSA-209ENST00000495394 NESP48681 1621 aa13.46□□□□□ -0.25
RPSA-209ENST00000495394 THOC2Q8NI27 1593 aaKnown RBP13.46□□□□□ -0.26
RPSA-209ENST00000495394 NAP1L5Q96NT1 182 aaPredicted RBP13.45□□□□□ -0.26
RPSA-209ENST00000495394 SLC4A1APQ9BWU0 796 aaKnown RBP13.45□□□□□ -0.26
RPSA-209ENST00000495394 CFTRP13569 1480 aa13.44□□□□□ -0.26
RPSA-209ENST00000495394 RBM10P98175 930 aaKnown RBP13.43□□□□□ -0.26
RPSA-209ENST00000495394 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.43□□□□□ -0.26
RPSA-209ENST00000495394 POLR3GLQ9BT43 218 aa13.42□□□□□ -0.26
RPSA-209ENST00000495394 KDM2AQ9Y2K7 1162 aa13.39□□□□□ -0.27
RPSA-209ENST00000495394 KIF21AQ7Z4S6 1674 aa13.39□□□□□ -0.27
RPSA-209ENST00000495394 PUS7Q96PZ0 661 aaKnown RBP13.38□□□□□ -0.27
RPSA-209ENST00000495394 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
RPSA-209ENST00000495394 CCDC9Q9Y3X0 531 aaKnown RBP13.37□□□□□ -0.27
RPSA-209ENST00000495394 GLIPR1L2Q4G1C9 344 aa13.36□□□□□ -0.27
RPSA-209ENST00000495394 MYT1LQ9UL68 1186 aa13.33□□□□□ -0.28
RPSA-209ENST00000495394 FANCD2Q9BXW9 1451 aa13.32□□□□□ -0.28
RPSA-209ENST00000495394 CEP164Q9UPV0 1460 aa13.31□□□□□ -0.28
RPSA-209ENST00000495394 IRX6P78412 446 aaPredicted RBP13.3□□□□□ -0.28
RPSA-209ENST00000495394 CFAP44Q96MT7 982 aa13.3□□□□□ -0.28
RPSA-209ENST00000495394 PPARGC1BQ86YN6 1023 aaKnown RBP13.28□□□□□ -0.28
RPSA-209ENST00000495394 DEKP35659 375 aaKnown RBP13.28□□□□□ -0.28
RPSA-209ENST00000495394 ZMYND15Q9H091 742 aa13.27□□□□□ -0.29
RPSA-209ENST00000495394 TICAM2Q86XR7 235 aa13.24□□□□□ -0.29
RPSA-209ENST00000495394 MRC2Q9UBG0 1479 aa13.24□□□□□ -0.29
RPSA-209ENST00000495394 FBLN2P98095 1184 aa13.22□□□□□ -0.29
RPSA-209ENST00000495394 WDR62O43379 1518 aa13.21□□□□□ -0.29
RPSA-209ENST00000495394 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.2□□□□□ -0.3
RPSA-209ENST00000495394 NEUROD1Q13562 356 aa13.19□□□□□ -0.3
RPSA-209ENST00000495394 URB2Q14146 1524 aaKnown RBP13.17□□□□□ -0.3
RPSA-209ENST00000495394 ABCC8Q09428 1581 aa13.17□□□□□ -0.3
RPSA-209ENST00000495394 DNMBPQ6XZF7 1577 aa13.16□□□□□ -0.3
RPSA-209ENST00000495394 OSCARQ8IYS5 282 aa13.16□□□□□ -0.3
RPSA-209ENST00000495394 BRPF3Q9ULD4 1205 aa13.16□□□□□ -0.3
RPSA-209ENST00000495394 TOPBP1Q92547 1522 aa13.14□□□□□ -0.31
RPSA-209ENST00000495394 NAP1L2Q9ULW6 460 aaPredicted RBP13.12□□□□□ -0.31
RPSA-209ENST00000495394 CLSTN1O94985 981 aa13.12□□□□□ -0.31
RPSA-209ENST00000495394 NCLP19338 710 aaKnown RBP13.12□□□□□ -0.31
RPSA-209ENST00000495394 ZNF592Q92610 1267 aa13.11□□□□□ -0.31
RPSA-209ENST00000495394 CUX1P39880 1505 aa13.1□□□□□ -0.31
RPSA-209ENST00000495394 BIVM-ERCC5R4GMW8 1640 aa13.09□□□□□ -0.31
RPSA-209ENST00000495394 SENP3Q9H4L4 574 aaPredicted RBP13.09□□□□□ -0.31
RPSA-209ENST00000495394 ZFP91Q96JP5 570 aaPredicted RBP13.08□□□□□ -0.32
RPSA-209ENST00000495394 WRNQ14191 1432 aaPredicted RBP eCLIP13.08□□□□□ -0.32
RPSA-209ENST00000495394 TEX2Q8IWB9 1127 aa13.08□□□□□ -0.32
RPSA-209ENST00000495394 TOP2BQ02880 1626 aa13.07□□□□□ -0.32
RPSA-209ENST00000495394 CHRM1P11229 460 aaPredicted RBP13.07□□□□□ -0.32
RPSA-209ENST00000495394 RIMBP3CA6NJZ7 1639 aa13.06□□□□□ -0.32
RPSA-209ENST00000495394 RIMBP3BA6NNM3 1639 aa13.06□□□□□ -0.32
RPSA-209ENST00000495394 RIMBP3Q9UFD9 1639 aa13.06□□□□□ -0.32
RPSA-209ENST00000495394 SYNJ1O43426 1573 aa13.06□□□□□ -0.32
RPSA-209ENST00000495394 ARID3AQ99856 593 aa13.06□□□□□ -0.32
RPSA-209ENST00000495394 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.06□□□□□ -0.32
RPSA-209ENST00000495394 IPO4Q8TEX9 1081 aaKnown RBP13.04□□□□□ -0.32
RPSA-209ENST00000495394 POLA1P09884 1462 aaPredicted RBP13.03□□□□□ -0.32
RPSA-209ENST00000495394 FGD5Q6ZNL6 1462 aa13.03□□□□□ -0.32
RPSA-209ENST00000495394 TMED8Q6PL24 325 aaPredicted RBP13.01□□□□□ -0.33
RPSA-209ENST00000495394 PSMD1Q99460 953 aa13.01□□□□□ -0.33
RPSA-209ENST00000495394 IFT140Q96RY7 1462 aa13.01□□□□□ -0.33
RPSA-209ENST00000495394 TARBP1Q13395 1621 aaKnown RBP13□□□□□ -0.33
RPSA-209ENST00000495394 CNPY4Q8N129 248 aa13□□□□□ -0.33
RPSA-209ENST00000495394 NPM1P06748 294 aaKnown RBP eCLIP13□□□□□ -0.33
RPSA-209ENST00000495394 WDR97A6NE52 1622 aa12.98□□□□□ -0.33
RPSA-209ENST00000495394 PRDM10Q9NQV6 1147 aa12.97□□□□□ -0.33
RPSA-209ENST00000495394 ZBTB7CA1YPR0 619 aa12.97□□□□□ -0.33
RPSA-209ENST00000495394 SOGA1O94964 1423 aa12.96□□□□□ -0.33
RPSA-209ENST00000495394 ARHGEF11O15085 1522 aa12.95□□□□□ -0.34
RPSA-209ENST00000495394 RAD54L2Q9Y4B4 1467 aa12.95□□□□□ -0.34
RPSA-209ENST00000495394 ZBTB22O15209 634 aa12.94□□□□□ -0.34
RPSA-209ENST00000495394 SECISBP2LQ93073 1101 aaKnown RBP12.94□□□□□ -0.34
RPSA-209ENST00000495394 EIF4G3O43432 1585 aaKnown RBP12.93□□□□□ -0.34
RPSA-209ENST00000495394 ABCA10Q8WWZ4 1543 aa12.93□□□□□ -0.34
RPSA-209ENST00000495394 FKBP8Q14318 412 aa12.92□□□□□ -0.34
RPSA-209ENST00000495394 CERS3Q8IU89 383 aa12.92□□□□□ -0.34
RPSA-209ENST00000495394 NECTIN2Q92692 538 aa12.92□□□□□ -0.34
RPSA-209ENST00000495394 RNF216Q9NWF9 866 aaPredicted RBP12.92□□□□□ -0.34
RPSA-209ENST00000495394 ZNF608Q9ULD9 1512 aaPredicted RBP12.9□□□□□ -0.34
RPSA-209ENST00000495394 PLCD4Q9BRC7 762 aa12.9□□□□□ -0.34
RPSA-209ENST00000495394 TRHP20396 242 aaPredicted RBP12.89□□□□□ -0.35
RPSA-209ENST00000495394 ABCA5Q8WWZ7 1642 aa12.89□□□□□ -0.35
RPSA-209ENST00000495394 FTSJ3Q8IY81 847 aaKnown RBP12.89□□□□□ -0.35
RPSA-209ENST00000495394 ZNF692Q9BU19 519 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms