RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 RRBP1Q9P2E9 1410 aaKnown RBP24.36■■□□□ 1.49
CCDC88B-210ENST00000494566 CCNB3Q8WWL7 1395 aa24.36■■□□□ 1.49
CCDC88B-210ENST00000494566 FHOD3Q2V2M9 1422 aa24.31■■□□□ 1.48
CCDC88B-210ENST00000494566 ABCA10Q8WWZ4 1543 aa24.31■■□□□ 1.48
CCDC88B-210ENST00000494566 URB2Q14146 1524 aaKnown RBP24.29■■□□□ 1.48
CCDC88B-210ENST00000494566 TDRD9Q8NDG6 1382 aaKnown RBP24.29■■□□□ 1.48
CCDC88B-210ENST00000494566 TIAM1Q13009 1591 aa24.29■■□□□ 1.48
CCDC88B-210ENST00000494566 PCF11O94913 1555 aaKnown RBP24.24■■□□□ 1.47
CCDC88B-210ENST00000494566 FAM50AQ14320 339 aaKnown RBP24.24■■□□□ 1.47
CCDC88B-210ENST00000494566 PHLDB1Q86UU1 1377 aa24.23■■□□□ 1.47
CCDC88B-210ENST00000494566 LRRC9Q6ZRR7 1453 aa24.22■■□□□ 1.47
CCDC88B-210ENST00000494566 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
CCDC88B-210ENST00000494566 FHAD1B1AJZ9 1412 aa24.17■■□□□ 1.46
CCDC88B-210ENST00000494566 RAB3GAP2Q9H2M9 1393 aa24.15■■□□□ 1.46
CCDC88B-210ENST00000494566 KIF21AQ7Z4S6 1674 aa24.12■■□□□ 1.45
CCDC88B-210ENST00000494566 CUL7Q14999 1698 aa24.11■■□□□ 1.45
CCDC88B-210ENST00000494566 CLSPNQ9HAW4 1339 aa24.1■■□□□ 1.45
CCDC88B-210ENST00000494566 PDS5BQ9NTI5 1447 aa24.1■■□□□ 1.45
CCDC88B-210ENST00000494566 MAP3K1Q13233 1512 aa24.09■■□□□ 1.45
CCDC88B-210ENST00000494566 CTTNBP2Q8WZ74 1663 aa24.09■■□□□ 1.45
CCDC88B-210ENST00000494566 WDR97A6NE52 1622 aa24.09■■□□□ 1.45
CCDC88B-210ENST00000494566 GAPVD1Q14C86 1478 aa24.08■■□□□ 1.45
CCDC88B-210ENST00000494566 CFAP43Q8NDM7 1665 aa24.07■■□□□ 1.44
CCDC88B-210ENST00000494566 ABCA5Q8WWZ7 1642 aa24.03■■□□□ 1.44
CCDC88B-210ENST00000494566 CASKIN1Q8WXD9 1431 aa24.01■■□□□ 1.43
CCDC88B-210ENST00000494566 FYCO1Q9BQS8 1478 aa24.01■■□□□ 1.43
CCDC88B-210ENST00000494566 EFCAB5A4FU69 1503 aa24.01■■□□□ 1.43
CCDC88B-210ENST00000494566 SETD5Q9C0A6 1442 aa24■■□□□ 1.43
CCDC88B-210ENST00000494566 SIN3AQ96ST3 1273 aa23.98■■□□□ 1.43
CCDC88B-210ENST00000494566 MAPKBP1O60336 1514 aa23.97■■□□□ 1.43
CCDC88B-210ENST00000494566 AQRO60306 1485 aaKnown RBP eCLIP23.94■■□□□ 1.42
CCDC88B-210ENST00000494566 FMN1Q68DA7 1419 aa23.94■■□□□ 1.42
CCDC88B-210ENST00000494566 KCNH8Q96L42 1107 aa23.94■■□□□ 1.42
CCDC88B-210ENST00000494566 SNAPC4Q5SXM2 1469 aa23.93■■□□□ 1.42
CCDC88B-210ENST00000494566 ARID3CA6NKF2 412 aa23.93■■□□□ 1.42
CCDC88B-210ENST00000494566 MTUS2Q5JR59 1369 aa23.93■■□□□ 1.42
CCDC88B-210ENST00000494566 TARBP1Q13395 1621 aaKnown RBP23.9■■□□□ 1.42
CCDC88B-210ENST00000494566 LRRIQ1Q96JM4 1722 aa23.89■■□□□ 1.41
CCDC88B-210ENST00000494566 SAMD9Q5K651 1589 aa23.86■■□□□ 1.41
CCDC88B-210ENST00000494566 HIRIP3Q9BW71 556 aaPredicted RBP23.85■■□□□ 1.41
CCDC88B-210ENST00000494566 BCANQ96GW7 911 aa23.84■■□□□ 1.41
CCDC88B-210ENST00000494566 FGD6Q6ZV73 1430 aa23.84■■□□□ 1.41
CCDC88B-210ENST00000494566 GRIN2BQ13224 1484 aa23.79■■□□□ 1.4
CCDC88B-210ENST00000494566 PTPRKQ15262 1439 aa23.79■■□□□ 1.4
CCDC88B-210ENST00000494566 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
CCDC88B-210ENST00000494566 NCOA2Q15596 1464 aa23.77■■□□□ 1.4
CCDC88B-210ENST00000494566 ZNF608Q9ULD9 1512 aaPredicted RBP23.77■■□□□ 1.4
CCDC88B-210ENST00000494566 SUPT16HQ9Y5B9 1047 aaKnown RBP23.75■■□□□ 1.39
CCDC88B-210ENST00000494566 MRC2Q9UBG0 1479 aa23.75■■□□□ 1.39
CCDC88B-210ENST00000494566 MAGI3Q5TCQ9 1506 aa23.73■■□□□ 1.39
CCDC88B-210ENST00000494566 CHIC2Q9UKJ5 165 aa23.73■■□□□ 1.39
CCDC88B-210ENST00000494566 MYOM3Q5VTT5 1437 aa23.69■■□□□ 1.38
CCDC88B-210ENST00000494566 ADAMTS12P58397 1594 aa23.68■■□□□ 1.38
CCDC88B-210ENST00000494566 IQGAP2Q13576 1575 aa23.68■■□□□ 1.38
CCDC88B-210ENST00000494566 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.67■■□□□ 1.388e-6■■□□□ 11.9
CCDC88B-210ENST00000494566 RRP7BPQ9NSQ0 103 aa23.67■■□□□ 1.38
CCDC88B-210ENST00000494566 CCDC18Q5T9S5 1454 aa23.67■■□□□ 1.38
CCDC88B-210ENST00000494566 DDX10Q13206 875 aaKnown RBP23.67■■□□□ 1.38
CCDC88B-210ENST00000494566 CDK13Q14004 1512 aaKnown RBP23.67■■□□□ 1.38
CCDC88B-210ENST00000494566 SUPT6HQ7KZ85 1726 aaKnown RBP23.65■■□□□ 1.38
CCDC88B-210ENST00000494566 EHBP1L1Q8N3D4 1523 aa23.63■■□□□ 1.37
CCDC88B-210ENST00000494566 PTPN23Q9H3S7 1636 aa23.6■■□□□ 1.37
CCDC88B-210ENST00000494566 HFM1A2PYH4 1435 aa23.6■■□□□ 1.37
CCDC88B-210ENST00000494566 NAIPQ13075 1403 aa23.59■■□□□ 1.37
CCDC88B-210ENST00000494566 UGGT2Q9NYU1 1516 aa23.59■■□□□ 1.37
CCDC88B-210ENST00000494566 EPRSP07814 1512 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-210ENST00000494566 THOC2Q8NI27 1593 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-210ENST00000494566 PPP1R15AO75807 674 aaPredicted RBP23.57■■□□□ 1.36
CCDC88B-210ENST00000494566 FBLN2P98095 1184 aa23.56■■□□□ 1.36
CCDC88B-210ENST00000494566 HECW1Q76N89 1606 aa23.56■■□□□ 1.36
CCDC88B-210ENST00000494566 IFT140Q96RY7 1462 aa23.55■■□□□ 1.36
CCDC88B-210ENST00000494566 TONSLQ96HA7 1378 aa23.53■■□□□ 1.36
CCDC88B-210ENST00000494566 ERCC6Q03468 1493 aa23.53■■□□□ 1.36
CCDC88B-210ENST00000494566 UACAQ9BZF9 1416 aa23.53■■□□□ 1.36
CCDC88B-210ENST00000494566 TRIM52Q96A61 297 aa23.52■■□□□ 1.36
CCDC88B-210ENST00000494566 ARHGEF11O15085 1522 aa23.51■■□□□ 1.35
CCDC88B-210ENST00000494566 WDR62O43379 1518 aa23.51■■□□□ 1.35
CCDC88B-210ENST00000494566 EIF4G3O43432 1585 aaKnown RBP23.49■■□□□ 1.35
CCDC88B-210ENST00000494566 FKBP8Q14318 412 aa23.47■■□□□ 1.35
CCDC88B-210ENST00000494566 ZNF644Q9H582 1327 aaPredicted RBP23.46■■□□□ 1.35
CCDC88B-210ENST00000494566 DISP1Q96F81 1524 aa23.46■■□□□ 1.35
CCDC88B-210ENST00000494566 KDM6BO15054 1643 aa23.46■■□□□ 1.35
CCDC88B-210ENST00000494566 FOXD1Q16676 465 aa23.46■■□□□ 1.35
CCDC88B-210ENST00000494566 TSHZ2Q9NRE2 1034 aa23.46■■□□□ 1.35
CCDC88B-210ENST00000494566 CHMP7Q8WUX9 453 aaPredicted RBP23.45■■□□□ 1.34
CCDC88B-210ENST00000494566 TIMELESSQ9UNS1 1208 aa23.44■■□□□ 1.34
CCDC88B-210ENST00000494566 GRIN2AQ12879 1464 aa23.44■■□□□ 1.34
CCDC88B-210ENST00000494566 KIAA0586Q9BVV6 1533 aa23.43■■□□□ 1.34
CCDC88B-210ENST00000494566 KIAA0556O60303 1618 aa23.42■■□□□ 1.34
CCDC88B-210ENST00000494566 TCOF1Q13428 1488 aaKnown RBP23.4■■□□□ 1.34
CCDC88B-210ENST00000494566 NUP153P49790 1475 aaKnown RBP23.39■■□□□ 1.34
CCDC88B-210ENST00000494566 DENND4BO75064 1496 aaPredicted RBP23.36■■□□□ 1.33
CCDC88B-210ENST00000494566 PLB1Q6P1J6 1458 aa23.33■■□□□ 1.33
CCDC88B-210ENST00000494566 PRG4Q92954 1404 aaPredicted RBP23.33■■□□□ 1.33
CCDC88B-210ENST00000494566 MYT1Q01538 1121 aa23.33■■□□□ 1.33
CCDC88B-210ENST00000494566 MPHOSPH9Q99550 1183 aa23.32■■□□□ 1.32
CCDC88B-210ENST00000494566 CEP170Q5SW79 1584 aa23.32■■□□□ 1.32
CCDC88B-210ENST00000494566 ZNF777Q9ULD5 760 aaPredicted RBP23.32■■□□□ 1.32
CCDC88B-210ENST00000494566 MIA2Q96PC5 1412 aa23.32■■□□□ 1.32
CCDC88B-210ENST00000494566 RAPGEF6Q8TEU7 1601 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms