RNA–Protein interactions for RNA: ENST00000493711.1

SNX17-208, Transcript of sorting nexin 17, humanhuman

TSL 3

Gene SNX17, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-208ENST00000493711 SYNJ2O15056 1496 aa20.38■□□□□ 0.85
SNX17-208ENST00000493711 CHMP7Q8WUX9 453 aaPredicted RBP20.38■□□□□ 0.85
SNX17-208ENST00000493711 PRXQ9BXM0 1461 aa20.37■□□□□ 0.85
SNX17-208ENST00000493711 DMRT2Q9Y5R5 561 aa20.35■□□□□ 0.85
SNX17-208ENST00000493711 ADAMTS12P58397 1594 aa20.34■□□□□ 0.85
SNX17-208ENST00000493711 RAPGEF2Q9Y4G8 1499 aa20.34■□□□□ 0.85
SNX17-208ENST00000493711 FBLN2P98095 1184 aa20.32■□□□□ 0.84
SNX17-208ENST00000493711 RIMBP3CA6NJZ7 1639 aa20.28■□□□□ 0.84
SNX17-208ENST00000493711 RIMBP3BA6NNM3 1639 aa20.28■□□□□ 0.84
SNX17-208ENST00000493711 RIMBP3Q9UFD9 1639 aa20.28■□□□□ 0.84
SNX17-208ENST00000493711 GRIN2AQ12879 1464 aa20.28■□□□□ 0.84
SNX17-208ENST00000493711 KIF21BO75037 1637 aa20.26■□□□□ 0.83
SNX17-208ENST00000493711 GOLGA3Q08378 1498 aa20.24■□□□□ 0.83
SNX17-208ENST00000493711 ARHGEF11O15085 1522 aa20.2■□□□□ 0.82
SNX17-208ENST00000493711 CYB5RLQ6IPT4 315 aa20.19■□□□□ 0.82
SNX17-208ENST00000493711 NUP160Q12769 1436 aa20.19■□□□□ 0.82
SNX17-208ENST00000493711 UBTFP17480 764 aaKnown RBP20.17■□□□□ 0.82
SNX17-208ENST00000493711 TRHP20396 242 aaPredicted RBP20.16■□□□□ 0.82
SNX17-208ENST00000493711 KIAA0586Q9BVV6 1533 aa20.13■□□□□ 0.81
SNX17-208ENST00000493711 CHD1O14646 1710 aa20.11■□□□□ 0.81
SNX17-208ENST00000493711 TNIKQ9UKE5 1360 aa20.09■□□□□ 0.81
SNX17-208ENST00000493711 EHMT2Q96KQ7 1210 aa20.08■□□□□ 0.81
SNX17-208ENST00000493711 CEP170Q5SW79 1584 aa20.08■□□□□ 0.8
SNX17-208ENST00000493711 LOC105371045A0A1W2PR82 267 aa20.06■□□□□ 0.8
SNX17-208ENST00000493711 CLASP1Q7Z460 1538 aa20.02■□□□□ 0.8
SNX17-208ENST00000493711 JPH4Q96JJ6 628 aa20.02■□□□□ 0.8
SNX17-208ENST00000493711 IQGAP2Q13576 1575 aa20.01■□□□□ 0.79
SNX17-208ENST00000493711 ARAP1Q96P48 1450 aa19.96■□□□□ 0.79
SNX17-208ENST00000493711 CTTNBP2Q8WZ74 1663 aa19.96■□□□□ 0.79
SNX17-208ENST00000493711 UGGT2Q9NYU1 1516 aa19.96■□□□□ 0.79
SNX17-208ENST00000493711 CARMIL2Q6F5E8 1435 aa19.95■□□□□ 0.78
SNX17-208ENST00000493711 PRG4Q92954 1404 aaPredicted RBP19.92■□□□□ 0.78
SNX17-208ENST00000493711 CNKSR2Q8WXI2 1034 aa19.91■□□□□ 0.78
SNX17-208ENST00000493711 SHROOM2Q13796 1616 aa19.91■□□□□ 0.78
SNX17-208ENST00000493711 EFCAB5A4FU69 1503 aa19.89■□□□□ 0.77
SNX17-208ENST00000493711 CLIP1P30622 1438 aa19.89■□□□□ 0.77
SNX17-208ENST00000493711 CEP162Q5TB80 1403 aa19.88■□□□□ 0.77
SNX17-208ENST00000493711 RANGAP1P46060 587 aaPredicted RBP19.87■□□□□ 0.77
SNX17-208ENST00000493711 DISP1Q96F81 1524 aa19.84■□□□□ 0.77
SNX17-208ENST00000493711 SAMD9Q5K651 1589 aa19.81■□□□□ 0.76
SNX17-208ENST00000493711 ARHGAP35Q9NRY4 1499 aa19.8■□□□□ 0.76
SNX17-208ENST00000493711 KIAA0556O60303 1618 aa19.8■□□□□ 0.76
SNX17-208ENST00000493711 PTPRGP23470 1445 aa19.77■□□□□ 0.76
SNX17-208ENST00000493711 P3H3Q8IVL6 736 aa19.77■□□□□ 0.76
SNX17-208ENST00000493711 FMN1Q68DA7 1419 aa19.75■□□□□ 0.75
SNX17-208ENST00000493711 FHOD3Q2V2M9 1422 aa19.74■□□□□ 0.75
SNX17-208ENST00000493711 HOXD11P31277 338 aaPredicted RBP19.72■□□□□ 0.75
SNX17-208ENST00000493711 ERCC6L2Q5T890 1561 aa19.71■□□□□ 0.75
SNX17-208ENST00000493711 TTBK1Q5TCY1 1321 aaPredicted RBP19.66■□□□□ 0.74
SNX17-208ENST00000493711 RNF216Q9NWF9 866 aaPredicted RBP19.65■□□□□ 0.74
SNX17-208ENST00000493711 NCBP3Q53F19 620 aaKnown RBP19.64■□□□□ 0.73
SNX17-208ENST00000493711 UACAQ9BZF9 1416 aa19.64■□□□□ 0.73
SNX17-208ENST00000493711 VPS8Q8N3P4 1428 aa19.63■□□□□ 0.73
SNX17-208ENST00000493711 UHRF1BP1LA0JNW5 1464 aa19.6■□□□□ 0.73
SNX17-208ENST00000493711 CASKIN1Q8WXD9 1431 aa19.6■□□□□ 0.73
SNX17-208ENST00000493711 DCAF8L1A6NGE4 600 aa19.59■□□□□ 0.73
SNX17-208ENST00000493711 PLB1Q6P1J6 1458 aa19.57■□□□□ 0.72
SNX17-208ENST00000493711 FYCO1Q9BQS8 1478 aa19.57■□□□□ 0.72
SNX17-208ENST00000493711 ABCA8O94911 1581 aa19.57■□□□□ 0.72
SNX17-208ENST00000493711 ABCC2Q92887 1545 aa19.56■□□□□ 0.72
SNX17-208ENST00000493711 NPM1P06748 294 aaKnown RBP eCLIP19.54■□□□□ 0.72
SNX17-208ENST00000493711 ATP1B4Q9UN42 357 aaPredicted RBP19.54■□□□□ 0.72
SNX17-208ENST00000493711 RAPGEF6Q8TEU7 1601 aa19.53■□□□□ 0.72
SNX17-208ENST00000493711 NPM3O75607 178 aaKnown RBP19.52■□□□□ 0.72
SNX17-208ENST00000493711 HECW1Q76N89 1606 aa19.51■□□□□ 0.71
SNX17-208ENST00000493711 APLP2Q06481 763 aa19.51■□□□□ 0.71
SNX17-208ENST00000493711 NUP153P49790 1475 aaKnown RBP19.5■□□□□ 0.71
SNX17-208ENST00000493711 KCNA4P22459 653 aa19.5■□□□□ 0.71
SNX17-208ENST00000493711 CCDC18Q5T9S5 1454 aa19.49■□□□□ 0.71
SNX17-208ENST00000493711 CDK11AQ9UQ88 783 aaPredicted RBP19.49■□□□□ 0.71
SNX17-208ENST00000493711 PCF11O94913 1555 aaKnown RBP19.49■□□□□ 0.71
SNX17-208ENST00000493711 KDM5BQ9UGL1 1544 aa19.47■□□□□ 0.71
SNX17-208ENST00000493711 EPRSP07814 1512 aaKnown RBP19.46■□□□□ 0.71
SNX17-208ENST00000493711 ADCY10Q96PN6 1610 aa19.45■□□□□ 0.7
SNX17-208ENST00000493711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.45■□□□□ 0.7
SNX17-208ENST00000493711 HNRNPUL2Q1KMD3 747 aaKnown RBP19.45■□□□□ 0.7
SNX17-208ENST00000493711 ATP10BO94823 1461 aa19.44■□□□□ 0.7
SNX17-208ENST00000493711 MAP3K1Q13233 1512 aa19.44■□□□□ 0.7
SNX17-208ENST00000493711 PLEKHD1A6NEE1 506 aa19.41■□□□□ 0.7
SNX17-208ENST00000493711 ARID3CA6NKF2 412 aa19.39■□□□□ 0.69
SNX17-208ENST00000493711 CDK13Q14004 1512 aaKnown RBP19.35■□□□□ 0.69
SNX17-208ENST00000493711 MTUS2Q5JR59 1369 aa19.34■□□□□ 0.69
SNX17-208ENST00000493711 TIAM1Q13009 1591 aa19.34■□□□□ 0.69
SNX17-208ENST00000493711 ZCCHC11Q5TAX3 1644 aaKnown RBP19.33■□□□□ 0.69
SNX17-208ENST00000493711 MAPKBP1O60336 1514 aa19.33■□□□□ 0.68
SNX17-208ENST00000493711 ASXL2Q76L83 1435 aa19.33■□□□□ 0.68
SNX17-208ENST00000493711 TROQ12816 1431 aaPredicted RBP19.32■□□□□ 0.68
SNX17-208ENST00000493711 WDR7Q9Y4E6 1490 aa19.31■□□□□ 0.68
SNX17-208ENST00000493711 LRRC9Q6ZRR7 1453 aa19.29■□□□□ 0.68
SNX17-208ENST00000493711 CFAP43Q8NDM7 1665 aa19.27■□□□□ 0.68
SNX17-208ENST00000493711 EHBP1L1Q8N3D4 1523 aa19.27■□□□□ 0.68
SNX17-208ENST00000493711 KANK4Q5T7N3 995 aaPredicted RBP19.25■□□□□ 0.67
SNX17-208ENST00000493711 KCNH8Q96L42 1107 aa19.24■□□□□ 0.67
SNX17-208ENST00000493711 LRRIQ1Q96JM4 1722 aa19.22■□□□□ 0.67
SNX17-208ENST00000493711 ILDR1Q86SU0 546 aaPredicted RBP19.21■□□□□ 0.67
SNX17-208ENST00000493711 MAGI3Q5TCQ9 1506 aa19.2■□□□□ 0.66
SNX17-208ENST00000493711 ABCC10Q5T3U5 1492 aa19.2■□□□□ 0.66
SNX17-208ENST00000493711 KIF14Q15058 1648 aa19.18■□□□□ 0.66
SNX17-208ENST00000493711 KDM4FA0A1W2PPD8 638 aa19.16■□□□□ 0.66
SNX17-208ENST00000493711 FAM69CQ0P6D2 419 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms