RNA–Protein interactions for RNA: ENST00000488912.5

COL21A1-211, Transcript of collagen type XXI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL21A1, Length 2,327 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-211ENST00000488912 ARHGAP35Q9NRY4 1499 aa17.31■□□□□ 0.36
COL21A1-211ENST00000488912 ARAP1Q96P48 1450 aa17.29■□□□□ 0.36
COL21A1-211ENST00000488912 CHMP7Q8WUX9 453 aaPredicted RBP17.29■□□□□ 0.36
COL21A1-211ENST00000488912 FBLN2P98095 1184 aa17.26■□□□□ 0.35
COL21A1-211ENST00000488912 IQGAP2Q13576 1575 aa17.26■□□□□ 0.35
COL21A1-211ENST00000488912 CHD1O14646 1710 aa17.26■□□□□ 0.35
COL21A1-211ENST00000488912 CEP170Q5SW79 1584 aa17.26■□□□□ 0.35
COL21A1-211ENST00000488912 VPS8Q8N3P4 1428 aa17.25■□□□□ 0.35
COL21A1-211ENST00000488912 EFCAB5A4FU69 1503 aa17.23■□□□□ 0.35
COL21A1-211ENST00000488912 KIAA0586Q9BVV6 1533 aa17.22■□□□□ 0.35
COL21A1-211ENST00000488912 SAMD9Q5K651 1589 aa17.22■□□□□ 0.35
COL21A1-211ENST00000488912 NUP160Q12769 1436 aa17.21■□□□□ 0.35
COL21A1-211ENST00000488912 P3H3Q8IVL6 736 aa17.17■□□□□ 0.34
COL21A1-211ENST00000488912 FHOD3Q2V2M9 1422 aa17.17■□□□□ 0.34
COL21A1-211ENST00000488912 UGGT2Q9NYU1 1516 aa17.16■□□□□ 0.34
COL21A1-211ENST00000488912 KIAA0556O60303 1618 aa17.1■□□□□ 0.33
COL21A1-211ENST00000488912 PPARGC1BQ86YN6 1023 aaKnown RBP17.1■□□□□ 0.33
COL21A1-211ENST00000488912 DISP1Q96F81 1524 aa17.09■□□□□ 0.33
COL21A1-211ENST00000488912 PCF11O94913 1555 aaKnown RBP17.09■□□□□ 0.33
COL21A1-211ENST00000488912 FMN1Q68DA7 1419 aa17.06■□□□□ 0.32
COL21A1-211ENST00000488912 JPH4Q96JJ6 628 aa17.04■□□□□ 0.32
COL21A1-211ENST00000488912 CLASP1Q7Z460 1538 aa17.02■□□□□ 0.32
COL21A1-211ENST00000488912 FYCO1Q9BQS8 1478 aa17.02■□□□□ 0.32
COL21A1-211ENST00000488912 APLP2Q06481 763 aa17.02■□□□□ 0.32
COL21A1-211ENST00000488912 SHROOM2Q13796 1616 aa17.02■□□□□ 0.32
COL21A1-211ENST00000488912 CASKIN1Q8WXD9 1431 aa17.02■□□□□ 0.31
COL21A1-211ENST00000488912 TTBK1Q5TCY1 1321 aaPredicted RBP17■□□□□ 0.31
COL21A1-211ENST00000488912 CARMIL2Q6F5E8 1435 aa16.99■□□□□ 0.31
COL21A1-211ENST00000488912 TIAM1Q13009 1591 aa16.98■□□□□ 0.31
COL21A1-211ENST00000488912 LRRIQ1Q96JM4 1722 aa16.98■□□□□ 0.31
COL21A1-211ENST00000488912 PRG4Q92954 1404 aaPredicted RBP16.98■□□□□ 0.31
COL21A1-211ENST00000488912 CFAP43Q8NDM7 1665 aa16.98■□□□□ 0.31
COL21A1-211ENST00000488912 ATP1B4Q9UN42 357 aaPredicted RBP16.96■□□□□ 0.3
COL21A1-211ENST00000488912 MAP3K1Q13233 1512 aa16.95■□□□□ 0.3
COL21A1-211ENST00000488912 TRIM26Q12899 539 aaPredicted RBP16.95■□□□□ 0.3
COL21A1-211ENST00000488912 HECW1Q76N89 1606 aa16.93■□□□□ 0.3
COL21A1-211ENST00000488912 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
COL21A1-211ENST00000488912 PCGF6Q9BYE7 350 aa16.93■□□□□ 0.3
COL21A1-211ENST00000488912 ERCC6L2Q5T890 1561 aa16.92■□□□□ 0.3
COL21A1-211ENST00000488912 RAPGEF6Q8TEU7 1601 aa16.91■□□□□ 0.3
COL21A1-211ENST00000488912 PLB1Q6P1J6 1458 aa16.88■□□□□ 0.29
COL21A1-211ENST00000488912 LRRC9Q6ZRR7 1453 aa16.88■□□□□ 0.29
COL21A1-211ENST00000488912 OSCARQ8IYS5 282 aa16.87■□□□□ 0.29
COL21A1-211ENST00000488912 CCDC18Q5T9S5 1454 aa16.86■□□□□ 0.29
COL21A1-211ENST00000488912 EPRSP07814 1512 aaKnown RBP16.86■□□□□ 0.29
COL21A1-211ENST00000488912 NUP153P49790 1475 aaKnown RBP16.86■□□□□ 0.29
COL21A1-211ENST00000488912 CDK13Q14004 1512 aaKnown RBP16.84■□□□□ 0.29
COL21A1-211ENST00000488912 ABCA8O94911 1581 aa16.84■□□□□ 0.29
COL21A1-211ENST00000488912 PTPRGP23470 1445 aa16.84■□□□□ 0.29
COL21A1-211ENST00000488912 ARID3CA6NKF2 412 aa16.81■□□□□ 0.28
COL21A1-211ENST00000488912 MAGI3Q5TCQ9 1506 aa16.8■□□□□ 0.28
COL21A1-211ENST00000488912 MTUS2Q5JR59 1369 aa16.78■□□□□ 0.28
COL21A1-211ENST00000488912 EHBP1L1Q8N3D4 1523 aa16.78■□□□□ 0.28
COL21A1-211ENST00000488912 UACAQ9BZF9 1416 aa16.75■□□□□ 0.27
COL21A1-211ENST00000488912 SUPT6HQ7KZ85 1726 aaKnown RBP16.74■□□□□ 0.27
COL21A1-211ENST00000488912 PHLDB1Q86UU1 1377 aa16.73■□□□□ 0.27
COL21A1-211ENST00000488912 ABCC2Q92887 1545 aa16.73■□□□□ 0.27
COL21A1-211ENST00000488912 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.71■□□□□ 0.27
COL21A1-211ENST00000488912 HNRNPUL2Q1KMD3 747 aaKnown RBP16.71■□□□□ 0.27
COL21A1-211ENST00000488912 ATP10BO94823 1461 aa16.71■□□□□ 0.27
COL21A1-211ENST00000488912 RRBP1Q9P2E9 1410 aaKnown RBP16.7■□□□□ 0.26
COL21A1-211ENST00000488912 NCOA2Q15596 1464 aa16.7■□□□□ 0.26
COL21A1-211ENST00000488912 ARHGEF11O15085 1522 aa16.68■□□□□ 0.26
COL21A1-211ENST00000488912 UHRF1BP1LA0JNW5 1464 aa16.67■□□□□ 0.26
COL21A1-211ENST00000488912 CDK11AQ9UQ88 783 aaPredicted RBP16.67■□□□□ 0.26
COL21A1-211ENST00000488912 TROQ12816 1431 aaPredicted RBP16.66■□□□□ 0.26
COL21A1-211ENST00000488912 ADCY10Q96PN6 1610 aa16.66■□□□□ 0.26
COL21A1-211ENST00000488912 CCNB3Q8WWL7 1395 aa16.65■□□□□ 0.26
COL21A1-211ENST00000488912 ZCCHC11Q5TAX3 1644 aaKnown RBP16.64■□□□□ 0.25
COL21A1-211ENST00000488912 KIF14Q15058 1648 aa16.63■□□□□ 0.25
COL21A1-211ENST00000488912 MYOM3Q5VTT5 1437 aa16.62■□□□□ 0.25
COL21A1-211ENST00000488912 KDM5BQ9UGL1 1544 aa16.62■□□□□ 0.25
COL21A1-211ENST00000488912 FGD6Q6ZV73 1430 aa16.61■□□□□ 0.25
COL21A1-211ENST00000488912 PLEKHD1A6NEE1 506 aa16.6■□□□□ 0.25
COL21A1-211ENST00000488912 RIMBP3CA6NJZ7 1639 aa16.58■□□□□ 0.25
COL21A1-211ENST00000488912 RIMBP3BA6NNM3 1639 aa16.58■□□□□ 0.25
COL21A1-211ENST00000488912 RIMBP3Q9UFD9 1639 aa16.58■□□□□ 0.25
COL21A1-211ENST00000488912 PTPN23Q9H3S7 1636 aa16.56■□□□□ 0.24
COL21A1-211ENST00000488912 FAM50AQ14320 339 aaKnown RBP16.55■□□□□ 0.24
COL21A1-211ENST00000488912 ITSN2Q9NZM3 1697 aa16.54■□□□□ 0.24
COL21A1-211ENST00000488912 ABCC10Q5T3U5 1492 aa16.53■□□□□ 0.24
COL21A1-211ENST00000488912 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.53■□□□□ 0.24
COL21A1-211ENST00000488912 CDC42BPAQ5VT25 1732 aa16.53■□□□□ 0.24
COL21A1-211ENST00000488912 MIA2Q96PC5 1412 aa16.52■□□□□ 0.24
COL21A1-211ENST00000488912 GPATCH8Q9UKJ3 1502 aaKnown RBP16.51■□□□□ 0.23
COL21A1-211ENST00000488912 ITGAEP38570 1179 aa16.51■□□□□ 0.23
COL21A1-211ENST00000488912 TCOF1Q13428 1488 aaKnown RBP16.51■□□□□ 0.23
COL21A1-211ENST00000488912 TTC37Q6PGP7 1564 aa16.5■□□□□ 0.23
COL21A1-211ENST00000488912 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.48■□□□□ 0.23
COL21A1-211ENST00000488912 WDR7Q9Y4E6 1490 aa16.47■□□□□ 0.23
COL21A1-211ENST00000488912 PREX2Q70Z35 1606 aa16.46■□□□□ 0.23
COL21A1-211ENST00000488912 CYB5RLQ6IPT4 315 aa16.46■□□□□ 0.23
COL21A1-211ENST00000488912 CDC42BPBQ9Y5S2 1711 aa16.45■□□□□ 0.22
COL21A1-211ENST00000488912 KCNH8Q96L42 1107 aa16.45■□□□□ 0.22
COL21A1-211ENST00000488912 ASXL2Q76L83 1435 aa16.45■□□□□ 0.22
COL21A1-211ENST00000488912 CFDP1Q9UEE9 299 aaPredicted RBP16.45■□□□□ 0.22
COL21A1-211ENST00000488912 MYO5CQ9NQX4 1742 aa16.44■□□□□ 0.22
COL21A1-211ENST00000488912 CAMSAP2Q08AD1 1489 aa16.43■□□□□ 0.22
COL21A1-211ENST00000488912 ZNF644Q9H582 1327 aaPredicted RBP16.43■□□□□ 0.22
COL21A1-211ENST00000488912 NPM1P06748 294 aaKnown RBP eCLIP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms