RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 CHD1O14646 1710 aa17.27■□□□□ 0.36
USP11-209ENST00000488848 EFCAB5A4FU69 1503 aa17.27■□□□□ 0.36
USP11-209ENST00000488848 IQGAP2Q13576 1575 aa17.27■□□□□ 0.35
USP11-209ENST00000488848 UBTFP17480 764 aaKnown RBP17.26■□□□□ 0.35
USP11-209ENST00000488848 SAMD9Q5K651 1589 aa17.25■□□□□ 0.35
USP11-209ENST00000488848 UGGT2Q9NYU1 1516 aa17.25■□□□□ 0.35
USP11-209ENST00000488848 CLIP1P30622 1438 aa17.23■□□□□ 0.35
USP11-209ENST00000488848 CHMP7Q8WUX9 453 aaPredicted RBP17.21■□□□□ 0.35
USP11-209ENST00000488848 ARHGAP35Q9NRY4 1499 aa17.2■□□□□ 0.34
USP11-209ENST00000488848 CLASP1Q7Z460 1538 aa17.2■□□□□ 0.34
USP11-209ENST00000488848 SHROOM2Q13796 1616 aa17.19■□□□□ 0.34
USP11-209ENST00000488848 ARAP1Q96P48 1450 aa17.15■□□□□ 0.34
USP11-209ENST00000488848 DISP1Q96F81 1524 aa17.11■□□□□ 0.33
USP11-209ENST00000488848 VPS8Q8N3P4 1428 aa17.11■□□□□ 0.33
USP11-209ENST00000488848 KIAA0556O60303 1618 aa17.1■□□□□ 0.33
USP11-209ENST00000488848 EHMT2Q96KQ7 1210 aa17.09■□□□□ 0.33
USP11-209ENST00000488848 FMN1Q68DA7 1419 aa17.04■□□□□ 0.32
USP11-209ENST00000488848 FBLN2P98095 1184 aa17.04■□□□□ 0.32
USP11-209ENST00000488848 CARMIL2Q6F5E8 1435 aa17.02■□□□□ 0.31
USP11-209ENST00000488848 JPH4Q96JJ6 628 aa17.01■□□□□ 0.31
USP11-209ENST00000488848 MAP3K1Q13233 1512 aa17.01■□□□□ 0.31
USP11-209ENST00000488848 FHOD3Q2V2M9 1422 aa17■□□□□ 0.31
USP11-209ENST00000488848 FYCO1Q9BQS8 1478 aa16.99■□□□□ 0.31
USP11-209ENST00000488848 CASKIN1Q8WXD9 1431 aa16.98■□□□□ 0.31
USP11-209ENST00000488848 PRG4Q92954 1404 aaPredicted RBP16.96■□□□□ 0.31
USP11-209ENST00000488848 PCF11O94913 1555 aaKnown RBP16.95■□□□□ 0.3
USP11-209ENST00000488848 OSCARQ8IYS5 282 aa16.95■□□□□ 0.3
USP11-209ENST00000488848 AEBP2Q6ZN18 517 aaPredicted RBP16.93■□□□□ 0.3
USP11-209ENST00000488848 CFAP43Q8NDM7 1665 aa16.91■□□□□ 0.3
USP11-209ENST00000488848 ABCA8O94911 1581 aa16.9■□□□□ 0.3
USP11-209ENST00000488848 HECW1Q76N89 1606 aa16.9■□□□□ 0.3
USP11-209ENST00000488848 ERCC6L2Q5T890 1561 aa16.89■□□□□ 0.29
USP11-209ENST00000488848 RAPGEF6Q8TEU7 1601 aa16.88■□□□□ 0.29
USP11-209ENST00000488848 CCDC18Q5T9S5 1454 aa16.87■□□□□ 0.29
USP11-209ENST00000488848 TIAM1Q13009 1591 aa16.87■□□□□ 0.29
USP11-209ENST00000488848 UHRF1BP1LA0JNW5 1464 aa16.85■□□□□ 0.29
USP11-209ENST00000488848 LRRIQ1Q96JM4 1722 aa16.84■□□□□ 0.29
USP11-209ENST00000488848 NUP153P49790 1475 aaKnown RBP16.84■□□□□ 0.29
USP11-209ENST00000488848 PTPRGP23470 1445 aa16.83■□□□□ 0.28
USP11-209ENST00000488848 RANGAP1P46060 587 aaPredicted RBP16.83■□□□□ 0.28
USP11-209ENST00000488848 P3H3Q8IVL6 736 aa16.81■□□□□ 0.28
USP11-209ENST00000488848 EPRSP07814 1512 aaKnown RBP16.8■□□□□ 0.28
USP11-209ENST00000488848 ABCC2Q92887 1545 aa16.8■□□□□ 0.28
USP11-209ENST00000488848 PLB1Q6P1J6 1458 aa16.8■□□□□ 0.28
USP11-209ENST00000488848 UACAQ9BZF9 1416 aa16.79■□□□□ 0.28
USP11-209ENST00000488848 ARHGEF11O15085 1522 aa16.78■□□□□ 0.28
USP11-209ENST00000488848 LRRC9Q6ZRR7 1453 aa16.77■□□□□ 0.28
USP11-209ENST00000488848 EHBP1L1Q8N3D4 1523 aa16.74■□□□□ 0.27
USP11-209ENST00000488848 KDM5BQ9UGL1 1544 aa16.74■□□□□ 0.27
USP11-209ENST00000488848 ATP10BO94823 1461 aa16.7■□□□□ 0.26
USP11-209ENST00000488848 APLP2Q06481 763 aa16.7■□□□□ 0.26
USP11-209ENST00000488848 RIMBP3CA6NJZ7 1639 aa16.7■□□□□ 0.26
USP11-209ENST00000488848 RIMBP3BA6NNM3 1639 aa16.7■□□□□ 0.26
USP11-209ENST00000488848 ADCY10Q96PN6 1610 aa16.7■□□□□ 0.26
USP11-209ENST00000488848 RIMBP3Q9UFD9 1639 aa16.7■□□□□ 0.26
USP11-209ENST00000488848 CDK13Q14004 1512 aaKnown RBP16.7■□□□□ 0.26
USP11-209ENST00000488848 MAGI3Q5TCQ9 1506 aa16.69■□□□□ 0.26
USP11-209ENST00000488848 SUPT6HQ7KZ85 1726 aaKnown RBP16.65■□□□□ 0.26
USP11-209ENST00000488848 TROQ12816 1431 aaPredicted RBP16.64■□□□□ 0.25
USP11-209ENST00000488848 ZCCHC11Q5TAX3 1644 aaKnown RBP16.64■□□□□ 0.25
USP11-209ENST00000488848 KANK4Q5T7N3 995 aaPredicted RBP16.64■□□□□ 0.25
USP11-209ENST00000488848 CDK11AQ9UQ88 783 aaPredicted RBP16.61■□□□□ 0.25
USP11-209ENST00000488848 MTUS2Q5JR59 1369 aa16.61■□□□□ 0.25
USP11-209ENST00000488848 RRBP1Q9P2E9 1410 aaKnown RBP16.6■□□□□ 0.25
USP11-209ENST00000488848 NCOA2Q15596 1464 aa16.59■□□□□ 0.25
USP11-209ENST00000488848 KIF14Q15058 1648 aa16.56■□□□□ 0.24
USP11-209ENST00000488848 MAPKBP1O60336 1514 aa16.56■□□□□ 0.24
USP11-209ENST00000488848 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.56■□□□□ 0.24
USP11-209ENST00000488848 ABCC10Q5T3U5 1492 aa16.55■□□□□ 0.24
USP11-209ENST00000488848 MYOM3Q5VTT5 1437 aa16.53■□□□□ 0.24
USP11-209ENST00000488848 PHLDB1Q86UU1 1377 aa16.53■□□□□ 0.24
USP11-209ENST00000488848 WDR7Q9Y4E6 1490 aa16.53■□□□□ 0.24
USP11-209ENST00000488848 MIA2Q96PC5 1412 aa16.53■□□□□ 0.24
USP11-209ENST00000488848 TRIM26Q12899 539 aaPredicted RBP16.52■□□□□ 0.24
USP11-209ENST00000488848 ATP1B4Q9UN42 357 aaPredicted RBP16.52■□□□□ 0.24
USP11-209ENST00000488848 ARAP3Q8WWN8 1544 aa16.51■□□□□ 0.23
USP11-209ENST00000488848 ITSN2Q9NZM3 1697 aa16.51■□□□□ 0.23
USP11-209ENST00000488848 PLEKHD1A6NEE1 506 aa16.5■□□□□ 0.23
USP11-209ENST00000488848 TTBK1Q5TCY1 1321 aaPredicted RBP16.49■□□□□ 0.23
USP11-209ENST00000488848 TCOF1Q13428 1488 aaKnown RBP16.49■□□□□ 0.23
USP11-209ENST00000488848 FGD6Q6ZV73 1430 aa16.49■□□□□ 0.23
USP11-209ENST00000488848 ABCA9Q8IUA7 1624 aa16.47■□□□□ 0.23
USP11-209ENST00000488848 CCNB3Q8WWL7 1395 aa16.47■□□□□ 0.23
USP11-209ENST00000488848 ASXL2Q76L83 1435 aa16.46■□□□□ 0.23
USP11-209ENST00000488848 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.46■□□□□ 0.23
USP11-209ENST00000488848 GPATCH8Q9UKJ3 1502 aaKnown RBP16.46■□□□□ 0.23
USP11-209ENST00000488848 PREX2Q70Z35 1606 aa16.46■□□□□ 0.23
USP11-209ENST00000488848 CDC42BPAQ5VT25 1732 aa16.46■□□□□ 0.23
USP11-209ENST00000488848 TTC37Q6PGP7 1564 aa16.45■□□□□ 0.22
USP11-209ENST00000488848 GLI2P10070 1586 aa16.43■□□□□ 0.22
USP11-209ENST00000488848 PTPN23Q9H3S7 1636 aa16.42■□□□□ 0.22
USP11-209ENST00000488848 PPARGC1BQ86YN6 1023 aaKnown RBP16.42■□□□□ 0.22
USP11-209ENST00000488848 MYO5CQ9NQX4 1742 aa16.42■□□□□ 0.22
USP11-209ENST00000488848 ARID3CA6NKF2 412 aa16.4■□□□□ 0.22
USP11-209ENST00000488848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.4■□□□□ 0.22
USP11-209ENST00000488848 HNRNPUL2Q1KMD3 747 aaKnown RBP16.4■□□□□ 0.22
USP11-209ENST00000488848 CDC42BPBQ9Y5S2 1711 aa16.39■□□□□ 0.21
USP11-209ENST00000488848 CYB5RLQ6IPT4 315 aa16.39■□□□□ 0.21
USP11-209ENST00000488848 PLCH2O75038 1416 aa16.38■□□□□ 0.21
USP11-209ENST00000488848 NPM1P06748 294 aaKnown RBP eCLIP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms