RNA–Protein interactions for RNA: ENST00000487172.1

PCOLCE-208, Transcript of procollagen C-endopeptidase enhancer, humanhuman

TSL 2

Gene PCOLCE, Length 686 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCOLCE-208ENST00000487172 SHROOM2Q13796 1616 aa31.85■■■□□ 2.69
PCOLCE-208ENST00000487172 JPH4Q96JJ6 628 aa31.83■■■□□ 2.69
PCOLCE-208ENST00000487172 CTTNBP2Q8WZ74 1663 aa31.81■■■□□ 2.68
PCOLCE-208ENST00000487172 GOLGA3Q08378 1498 aa31.81■■■□□ 2.68
PCOLCE-208ENST00000487172 IQGAP2Q13576 1575 aa31.81■■■□□ 2.68
PCOLCE-208ENST00000487172 ARHGEF11O15085 1522 aa31.77■■■□□ 2.68
PCOLCE-208ENST00000487172 RIMBP3CA6NJZ7 1639 aa31.71■■■□□ 2.67
PCOLCE-208ENST00000487172 RIMBP3BA6NNM3 1639 aa31.71■■■□□ 2.67
PCOLCE-208ENST00000487172 RIMBP3Q9UFD9 1639 aa31.71■■■□□ 2.67
PCOLCE-208ENST00000487172 PRG4Q92954 1404 aaPredicted RBP31.7■■■□□ 2.67
PCOLCE-208ENST00000487172 UGGT2Q9NYU1 1516 aa31.69■■■□□ 2.66
PCOLCE-208ENST00000487172 UBTFP17480 764 aaKnown RBP31.67■■■□□ 2.66
PCOLCE-208ENST00000487172 EHMT2Q96KQ7 1210 aa31.63■■■□□ 2.65
PCOLCE-208ENST00000487172 ERCC6L2Q5T890 1561 aa31.63■■■□□ 2.65
PCOLCE-208ENST00000487172 CARMIL2Q6F5E8 1435 aa31.58■■■□□ 2.65
PCOLCE-208ENST00000487172 DISP1Q96F81 1524 aa31.56■■■□□ 2.64
PCOLCE-208ENST00000487172 ARAP1Q96P48 1450 aa31.54■■■□□ 2.64
PCOLCE-208ENST00000487172 TNIKQ9UKE5 1360 aa31.51■■■□□ 2.63
PCOLCE-208ENST00000487172 KIAA0556O60303 1618 aa31.49■■■□□ 2.63
PCOLCE-208ENST00000487172 SAMD9Q5K651 1589 aa31.45■■■□□ 2.63
PCOLCE-208ENST00000487172 CYB5RLQ6IPT4 315 aa31.45■■■□□ 2.63
PCOLCE-208ENST00000487172 LOC105371045A0A1W2PR82 267 aa31.43■■■□□ 2.62
PCOLCE-208ENST00000487172 PTPRGP23470 1445 aa31.4■■■□□ 2.62
PCOLCE-208ENST00000487172 EFCAB5A4FU69 1503 aa31.39■■■□□ 2.62
PCOLCE-208ENST00000487172 RANGAP1P46060 587 aaPredicted RBP31.37■■■□□ 2.61
PCOLCE-208ENST00000487172 P3H3Q8IVL6 736 aa31.32■■■□□ 2.6
PCOLCE-208ENST00000487172 ARHGAP35Q9NRY4 1499 aa31.3■■■□□ 2.6
PCOLCE-208ENST00000487172 TTBK1Q5TCY1 1321 aaPredicted RBP31.25■■■□□ 2.59
PCOLCE-208ENST00000487172 FHOD3Q2V2M9 1422 aa31.24■■■□□ 2.59
PCOLCE-208ENST00000487172 CLIP1P30622 1438 aa31.24■■■□□ 2.59
PCOLCE-208ENST00000487172 UACAQ9BZF9 1416 aa31.2■■■□□ 2.59
PCOLCE-208ENST00000487172 CEP162Q5TB80 1403 aa31.18■■■□□ 2.58
PCOLCE-208ENST00000487172 UHRF1BP1LA0JNW5 1464 aa31.18■■■□□ 2.58
PCOLCE-208ENST00000487172 ABCA8O94911 1581 aa31.15■■■□□ 2.58
PCOLCE-208ENST00000487172 ADCY10Q96PN6 1610 aa31.14■■■□□ 2.58
PCOLCE-208ENST00000487172 ABCC2Q92887 1545 aa31.14■■■□□ 2.57
PCOLCE-208ENST00000487172 PLB1Q6P1J6 1458 aa31.13■■■□□ 2.57
PCOLCE-208ENST00000487172 FMN1Q68DA7 1419 aa31.11■■■□□ 2.57
PCOLCE-208ENST00000487172 RAPGEF6Q8TEU7 1601 aa31.05■■■□□ 2.56
PCOLCE-208ENST00000487172 NPM1P06748 294 aaKnown RBP eCLIP31.04■■■□□ 2.56
PCOLCE-208ENST00000487172 KDM5BQ9UGL1 1544 aa31.02■■■□□ 2.56
PCOLCE-208ENST00000487172 NUP153P49790 1475 aaKnown RBP30.94■■■□□ 2.54
PCOLCE-208ENST00000487172 ZCCHC11Q5TAX3 1644 aaKnown RBP30.91■■■□□ 2.54
PCOLCE-208ENST00000487172 CASKIN1Q8WXD9 1431 aa30.91■■■□□ 2.54
PCOLCE-208ENST00000487172 MAPKBP1O60336 1514 aa30.91■■■□□ 2.54
PCOLCE-208ENST00000487172 ATP10BO94823 1461 aa30.89■■■□□ 2.54
PCOLCE-208ENST00000487172 HECW1Q76N89 1606 aa30.88■■■□□ 2.53
PCOLCE-208ENST00000487172 PCF11O94913 1555 aaKnown RBP30.85■■■□□ 2.53
PCOLCE-208ENST00000487172 FYCO1Q9BQS8 1478 aa30.84■■■□□ 2.53
PCOLCE-208ENST00000487172 VPS8Q8N3P4 1428 aa30.81■■■□□ 2.52
PCOLCE-208ENST00000487172 ATP1B4Q9UN42 357 aaPredicted RBP30.81■■■□□ 2.52
PCOLCE-208ENST00000487172 EPRSP07814 1512 aaKnown RBP30.8■■■□□ 2.52
PCOLCE-208ENST00000487172 ASXL2Q76L83 1435 aa30.8■■■□□ 2.52
PCOLCE-208ENST00000487172 ARID3CA6NKF2 412 aa30.79■■■□□ 2.52
PCOLCE-208ENST00000487172 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.75■■■□□ 2.51
PCOLCE-208ENST00000487172 HNRNPUL2Q1KMD3 747 aaKnown RBP30.75■■■□□ 2.51
PCOLCE-208ENST00000487172 LRRIQ1Q96JM4 1722 aa30.74■■■□□ 2.51
PCOLCE-208ENST00000487172 CCDC18Q5T9S5 1454 aa30.74■■■□□ 2.51
PCOLCE-208ENST00000487172 CDK13Q14004 1512 aaKnown RBP30.73■■■□□ 2.51
PCOLCE-208ENST00000487172 WDR7Q9Y4E6 1490 aa30.72■■■□□ 2.51
PCOLCE-208ENST00000487172 ABCC10Q5T3U5 1492 aa30.7■■■□□ 2.51
PCOLCE-208ENST00000487172 PLEKHD1A6NEE1 506 aa30.69■■■□□ 2.5
PCOLCE-208ENST00000487172 CDK11AQ9UQ88 783 aaPredicted RBP30.67■■■□□ 2.5
PCOLCE-208ENST00000487172 DIP2BQ9P265 1576 aa30.65■■■□□ 2.5
PCOLCE-208ENST00000487172 TRHP20396 242 aaPredicted RBP30.64■■■□□ 2.5
PCOLCE-208ENST00000487172 KIF13AQ9H1H9 1805 aa30.61■■■□□ 2.49
PCOLCE-208ENST00000487172 GLI2P10070 1586 aa30.61■■■□□ 2.49
PCOLCE-208ENST00000487172 FAM69CQ0P6D2 419 aa30.6■■■□□ 2.49
PCOLCE-208ENST00000487172 KCNH8Q96L42 1107 aa30.57■■■□□ 2.48
PCOLCE-208ENST00000487172 MAP3K1Q13233 1512 aa30.55■■■□□ 2.48
PCOLCE-208ENST00000487172 TROQ12816 1431 aaPredicted RBP30.55■■■□□ 2.48
PCOLCE-208ENST00000487172 TIAM1Q13009 1591 aa30.51■■■□□ 2.47
PCOLCE-208ENST00000487172 CFAP43Q8NDM7 1665 aa30.51■■■□□ 2.47
PCOLCE-208ENST00000487172 MAGI3Q5TCQ9 1506 aa30.5■■■□□ 2.47
PCOLCE-208ENST00000487172 ABCA9Q8IUA7 1624 aa30.46■■■□□ 2.47
PCOLCE-208ENST00000487172 MAP3K4Q9Y6R4 1608 aa30.45■■■□□ 2.47
PCOLCE-208ENST00000487172 APLP2Q06481 763 aa30.45■■■□□ 2.47
PCOLCE-208ENST00000487172 MTUS2Q5JR59 1369 aa30.43■■■□□ 2.46
PCOLCE-208ENST00000487172 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.42■■■□□ 2.461e-9■■■■■ 62
PCOLCE-208ENST00000487172 KIF14Q15058 1648 aa30.41■■■□□ 2.46
PCOLCE-208ENST00000487172 EHBP1L1Q8N3D4 1523 aa30.41■■■□□ 2.46
PCOLCE-208ENST00000487172 CD109Q6YHK3 1445 aa30.39■■■□□ 2.46
PCOLCE-208ENST00000487172 LRRC9Q6ZRR7 1453 aa30.38■■■□□ 2.45
PCOLCE-208ENST00000487172 TTC37Q6PGP7 1564 aa30.34■■■□□ 2.45
PCOLCE-208ENST00000487172 KANK4Q5T7N3 995 aaPredicted RBP30.34■■■□□ 2.45
PCOLCE-208ENST00000487172 TSPOAP1O95153 1857 aa30.33■■■□□ 2.45
PCOLCE-208ENST00000487172 PPRC1Q5VV67 1664 aaKnown RBP30.33■■■□□ 2.45
PCOLCE-208ENST00000487172 TEX14Q8IWB6 1497 aa30.29■■■□□ 2.44
PCOLCE-208ENST00000487172 PLCH2O75038 1416 aa30.27■■■□□ 2.44
PCOLCE-208ENST00000487172 SUPT6HQ7KZ85 1726 aaKnown RBP30.27■■■□□ 2.44
PCOLCE-208ENST00000487172 MYO5CQ9NQX4 1742 aa30.25■■■□□ 2.43
PCOLCE-208ENST00000487172 ARAP3Q8WWN8 1544 aa30.24■■■□□ 2.43
PCOLCE-208ENST00000487172 NCOA2Q15596 1464 aa30.23■■■□□ 2.43
PCOLCE-208ENST00000487172 PHLDB1Q86UU1 1377 aa30.19■■■□□ 2.42
PCOLCE-208ENST00000487172 GPATCH8Q9UKJ3 1502 aaKnown RBP30.19■■■□□ 2.42
PCOLCE-208ENST00000487172 CDC42BPAQ5VT25 1732 aa30.19■■■□□ 2.42
PCOLCE-208ENST00000487172 NEO1Q92859 1461 aa30.19■■■□□ 2.42
PCOLCE-208ENST00000487172 CCNB3Q8WWL7 1395 aa30.18■■■□□ 2.42
PCOLCE-208ENST00000487172 PREX2Q70Z35 1606 aa30.18■■■□□ 2.42
PCOLCE-208ENST00000487172 CDC42BPBQ9Y5S2 1711 aa30.16■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms