RNA–Protein interactions for RNA: ENST00000487062.1

SF3A3-206, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 775 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-206ENST00000487062 CLIP1P30622 1438 aa11.11□□□□□ -0.63
SF3A3-206ENST00000487062 CTTNBP2Q8WZ74 1663 aa11.09□□□□□ -0.63
SF3A3-206ENST00000487062 NPM3O75607 178 aaKnown RBP11.09□□□□□ -0.63
SF3A3-206ENST00000487062 GRIN2BQ13224 1484 aa11.08□□□□□ -0.64
SF3A3-206ENST00000487062 EIF4G3O43432 1585 aaKnown RBP11.07□□□□□ -0.64
SF3A3-206ENST00000487062 AQRO60306 1485 aaKnown RBP eCLIP11.06□□□□□ -0.64
SF3A3-206ENST00000487062 ZBTB22O15209 634 aa11.05□□□□□ -0.64
SF3A3-206ENST00000487062 ADAMTS12P58397 1594 aa11.05□□□□□ -0.64
SF3A3-206ENST00000487062 ZNF608Q9ULD9 1512 aaPredicted RBP11.04□□□□□ -0.64
SF3A3-206ENST00000487062 FHAD1B1AJZ9 1412 aa11.04□□□□□ -0.64
SF3A3-206ENST00000487062 VPS8Q8N3P4 1428 aa11.02□□□□□ -0.64
SF3A3-206ENST00000487062 RANGAP1P46060 587 aaPredicted RBP11.01□□□□□ -0.65
SF3A3-206ENST00000487062 PIAS4Q8N2W9 510 aaPredicted RBP11.01□□□□□ -0.65
SF3A3-206ENST00000487062 MAGI1Q96QZ7 1491 aaPredicted RBP11□□□□□ -0.65
SF3A3-206ENST00000487062 TRIM26Q12899 539 aaPredicted RBP10.99□□□□□ -0.65
SF3A3-206ENST00000487062 SNAPC4Q5SXM2 1469 aa10.99□□□□□ -0.65
SF3A3-206ENST00000487062 ARAP1Q96P48 1450 aa10.99□□□□□ -0.65
SF3A3-206ENST00000487062 ARHGAP35Q9NRY4 1499 aa10.99□□□□□ -0.65
SF3A3-206ENST00000487062 EFCAB5A4FU69 1503 aa10.99□□□□□ -0.65
SF3A3-206ENST00000487062 APLP2Q06481 763 aa10.97□□□□□ -0.65
SF3A3-206ENST00000487062 SYNJ2O15056 1496 aa10.94□□□□□ -0.66
SF3A3-206ENST00000487062 SLC24A1O60721 1099 aa10.94□□□□□ -0.66
SF3A3-206ENST00000487062 PCGF6Q9BYE7 350 aa10.94□□□□□ -0.66
SF3A3-206ENST00000487062 IQGAP2Q13576 1575 aa10.94□□□□□ -0.66
SF3A3-206ENST00000487062 GRIN2AQ12879 1464 aa10.93□□□□□ -0.66
SF3A3-206ENST00000487062 SAMD9Q5K651 1589 aa10.92□□□□□ -0.66
SF3A3-206ENST00000487062 CHMP7Q8WUX9 453 aaPredicted RBP10.91□□□□□ -0.66
SF3A3-206ENST00000487062 KIAA0586Q9BVV6 1533 aa10.89□□□□□ -0.67
SF3A3-206ENST00000487062 PPARGC1BQ86YN6 1023 aaKnown RBP10.89□□□□□ -0.67
SF3A3-206ENST00000487062 FMN1Q68DA7 1419 aa10.88□□□□□ -0.67
SF3A3-206ENST00000487062 FHOD3Q2V2M9 1422 aa10.87□□□□□ -0.67
SF3A3-206ENST00000487062 UGGT2Q9NYU1 1516 aa10.87□□□□□ -0.67
SF3A3-206ENST00000487062 MAP3K1Q13233 1512 aa10.86□□□□□ -0.67
SF3A3-206ENST00000487062 FBLN2P98095 1184 aa10.86□□□□□ -0.67
SF3A3-206ENST00000487062 P3H3Q8IVL6 736 aa10.86□□□□□ -0.67
SF3A3-206ENST00000487062 CEP170Q5SW79 1584 aa10.86□□□□□ -0.67
SF3A3-206ENST00000487062 CHD1O14646 1710 aa10.85□□□□□ -0.67
SF3A3-206ENST00000487062 FYCO1Q9BQS8 1478 aa10.85□□□□□ -0.67
SF3A3-206ENST00000487062 PCF11O94913 1555 aaKnown RBP10.85□□□□□ -0.67
SF3A3-206ENST00000487062 NUP160Q12769 1436 aa10.84□□□□□ -0.67
SF3A3-206ENST00000487062 CASKIN1Q8WXD9 1431 aa10.84□□□□□ -0.67
SF3A3-206ENST00000487062 CFAP43Q8NDM7 1665 aa10.83□□□□□ -0.68
SF3A3-206ENST00000487062 TIAM1Q13009 1591 aa10.83□□□□□ -0.68
SF3A3-206ENST00000487062 CNKSR2Q8WXI2 1034 aa10.82□□□□□ -0.68
SF3A3-206ENST00000487062 KIAA0556O60303 1618 aa10.82□□□□□ -0.68
SF3A3-206ENST00000487062 TTBK1Q5TCY1 1321 aaPredicted RBP10.82□□□□□ -0.68
SF3A3-206ENST00000487062 CARMIL2Q6F5E8 1435 aa10.79□□□□□ -0.68
SF3A3-206ENST00000487062 RTN4Q9NQC3 1192 aaKnown RBP10.79□□□□□ -0.68
SF3A3-206ENST00000487062 ATP1B4Q9UN42 357 aaPredicted RBP10.79□□□□□ -0.68
SF3A3-206ENST00000487062 HECW1Q76N89 1606 aa10.78□□□□□ -0.68
SF3A3-206ENST00000487062 DISP1Q96F81 1524 aa10.78□□□□□ -0.68
SF3A3-206ENST00000487062 LRRC9Q6ZRR7 1453 aa10.76□□□□□ -0.69
SF3A3-206ENST00000487062 JPH4Q96JJ6 628 aa10.76□□□□□ -0.69
SF3A3-206ENST00000487062 CCDC18Q5T9S5 1454 aa10.75□□□□□ -0.69
SF3A3-206ENST00000487062 AMER1Q5JTC6 1135 aaPredicted RBP10.75□□□□□ -0.69
SF3A3-206ENST00000487062 KANK4Q5T7N3 995 aaPredicted RBP10.75□□□□□ -0.69
SF3A3-206ENST00000487062 LRRIQ1Q96JM4 1722 aa10.75□□□□□ -0.69
SF3A3-206ENST00000487062 FOXD4L1Q9NU39 408 aa10.74□□□□□ -0.69
SF3A3-206ENST00000487062 RAPGEF6Q8TEU7 1601 aa10.73□□□□□ -0.69
SF3A3-206ENST00000487062 SHROOM2Q13796 1616 aa10.73□□□□□ -0.69
SF3A3-206ENST00000487062 EHBP1L1Q8N3D4 1523 aa10.7□□□□□ -0.7
SF3A3-206ENST00000487062 PRG4Q92954 1404 aaPredicted RBP10.7□□□□□ -0.7
SF3A3-206ENST00000487062 SUPT6HQ7KZ85 1726 aaKnown RBP10.7□□□□□ -0.7
SF3A3-206ENST00000487062 EPRSP07814 1512 aaKnown RBP10.69□□□□□ -0.7
SF3A3-206ENST00000487062 CLASP1Q7Z460 1538 aa10.69□□□□□ -0.7
SF3A3-206ENST00000487062 MTUS2Q5JR59 1369 aa10.69□□□□□ -0.7
SF3A3-206ENST00000487062 RRBP1Q9P2E9 1410 aaKnown RBP10.68□□□□□ -0.7
SF3A3-206ENST00000487062 CCNB3Q8WWL7 1395 aa10.65□□□□□ -0.7
SF3A3-206ENST00000487062 CDK11AQ9UQ88 783 aaPredicted RBP10.65□□□□□ -0.7
SF3A3-206ENST00000487062 NUP153P49790 1475 aaKnown RBP10.65□□□□□ -0.7
SF3A3-206ENST00000487062 ABCA8O94911 1581 aa10.65□□□□□ -0.71
SF3A3-206ENST00000487062 CDK13Q14004 1512 aaKnown RBP10.64□□□□□ -0.71
SF3A3-206ENST00000487062 HRCP23327 699 aa10.64□□□□□ -0.71
SF3A3-206ENST00000487062 PTPRGP23470 1445 aa10.64□□□□□ -0.71
SF3A3-206ENST00000487062 SCAF1Q9H7N4 1312 aaKnown RBP10.63□□□□□ -0.71
SF3A3-206ENST00000487062 PLB1Q6P1J6 1458 aa10.63□□□□□ -0.71
SF3A3-206ENST00000487062 PHLDB1Q86UU1 1377 aa10.63□□□□□ -0.71
SF3A3-206ENST00000487062 NCOA2Q15596 1464 aa10.62□□□□□ -0.71
SF3A3-206ENST00000487062 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.61□□□□□ -0.71
SF3A3-206ENST00000487062 HNRNPUL2Q1KMD3 747 aaKnown RBP10.61□□□□□ -0.71
SF3A3-206ENST00000487062 MAGI3Q5TCQ9 1506 aa10.61□□□□□ -0.71
SF3A3-206ENST00000487062 ZEB1P37275 1124 aaPredicted RBP10.6□□□□□ -0.71
SF3A3-206ENST00000487062 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.6□□□□□ -0.71
SF3A3-206ENST00000487062 MYOM3Q5VTT5 1437 aa10.59□□□□□ -0.71
SF3A3-206ENST00000487062 ARHGEF11O15085 1522 aa10.59□□□□□ -0.71
SF3A3-206ENST00000487062 ERCC6L2Q5T890 1561 aa10.59□□□□□ -0.71
SF3A3-206ENST00000487062 FGD6Q6ZV73 1430 aa10.58□□□□□ -0.72
SF3A3-206ENST00000487062 UACAQ9BZF9 1416 aa10.58□□□□□ -0.72
SF3A3-206ENST00000487062 ARID3CA6NKF2 412 aa10.58□□□□□ -0.72
SF3A3-206ENST00000487062 OSCARQ8IYS5 282 aa10.58□□□□□ -0.72
SF3A3-206ENST00000487062 ADCY10Q96PN6 1610 aa10.58□□□□□ -0.72
SF3A3-206ENST00000487062 TROQ12816 1431 aaPredicted RBP10.58□□□□□ -0.72
SF3A3-206ENST00000487062 FAM50AQ14320 339 aaKnown RBP10.57□□□□□ -0.72
SF3A3-206ENST00000487062 ABCC2Q92887 1545 aa10.57□□□□□ -0.72
SF3A3-206ENST00000487062 ITSN2Q9NZM3 1697 aa10.57□□□□□ -0.72
SF3A3-206ENST00000487062 ATP10BO94823 1461 aa10.56□□□□□ -0.72
SF3A3-206ENST00000487062 PTPN23Q9H3S7 1636 aa10.56□□□□□ -0.72
SF3A3-206ENST00000487062 PLEKHD1A6NEE1 506 aa10.55□□□□□ -0.72
SF3A3-206ENST00000487062 CCER1Q8TC90 406 aaPredicted RBP10.55□□□□□ -0.72
SF3A3-206ENST00000487062 MIA2Q96PC5 1412 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms