RNA–Protein interactions for RNA: ENST00000486515.1

UBR4-214, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 536 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-214ENST00000486515 WDR97A6NE52 1622 aa11.36□□□□□ -0.59
UBR4-214ENST00000486515 TDRD9Q8NDG6 1382 aaKnown RBP11.35□□□□□ -0.59
UBR4-214ENST00000486515 ABCA10Q8WWZ4 1543 aa11.35□□□□□ -0.59
UBR4-214ENST00000486515 TARBP1Q13395 1621 aaKnown RBP11.34□□□□□ -0.59
UBR4-214ENST00000486515 CSRNP3Q8WYN3 585 aa11.33□□□□□ -0.6
UBR4-214ENST00000486515 CERKQ8TCT0 537 aa11.32□□□□□ -0.6
UBR4-214ENST00000486515 DIP2BQ9P265 1576 aa11.28□□□□□ -0.6
UBR4-214ENST00000486515 MAGI1Q96QZ7 1491 aaPredicted RBP11.28□□□□□ -0.6
UBR4-214ENST00000486515 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
UBR4-214ENST00000486515 GRIN2BQ13224 1484 aa11.27□□□□□ -0.6
UBR4-214ENST00000486515 PBRM1Q86U86 1689 aa11.25□□□□□ -0.61
UBR4-214ENST00000486515 RUSC2Q8N2Y8 1516 aa11.25□□□□□ -0.61
UBR4-214ENST00000486515 ABCA5Q8WWZ7 1642 aa11.24□□□□□ -0.61
UBR4-214ENST00000486515 EHMT2Q96KQ7 1210 aa11.24□□□□□ -0.61
UBR4-214ENST00000486515 IGF1RP08069 1367 aa11.24□□□□□ -0.61
UBR4-214ENST00000486515 CARMIL1Q5VZK9 1371 aa11.24□□□□□ -0.61
UBR4-214ENST00000486515 UBTFP17480 764 aaKnown RBP11.23□□□□□ -0.61
UBR4-214ENST00000486515 MAPKBP1O60336 1514 aa11.23□□□□□ -0.61
UBR4-214ENST00000486515 ERICH3Q5RHP9 1530 aa11.23□□□□□ -0.61
UBR4-214ENST00000486515 TSPOAP1O95153 1857 aa11.21□□□□□ -0.62
UBR4-214ENST00000486515 FHAD1B1AJZ9 1412 aa11.2□□□□□ -0.62
UBR4-214ENST00000486515 CEP170Q5SW79 1584 aa11.19□□□□□ -0.62
UBR4-214ENST00000486515 RAPGEF2Q9Y4G8 1499 aa11.18□□□□□ -0.62
UBR4-214ENST00000486515 GOLGA3Q08378 1498 aa11.16□□□□□ -0.62
UBR4-214ENST00000486515 CUL7Q14999 1698 aa11.15□□□□□ -0.62
UBR4-214ENST00000486515 PRXQ9BXM0 1461 aa11.14□□□□□ -0.63
UBR4-214ENST00000486515 ADAMTS12P58397 1594 aa11.13□□□□□ -0.63
UBR4-214ENST00000486515 COL17A1Q9UMD9 1497 aaPredicted RBP11.12□□□□□ -0.63
UBR4-214ENST00000486515 LOC105371045A0A1W2PR82 267 aa11.12□□□□□ -0.63
UBR4-214ENST00000486515 RANGAP1P46060 587 aaPredicted RBP11.1□□□□□ -0.63
UBR4-214ENST00000486515 KIF21BO75037 1637 aa11.09□□□□□ -0.63
UBR4-214ENST00000486515 PCF11O94913 1555 aaKnown RBP11.09□□□□□ -0.63
UBR4-214ENST00000486515 GRIN2AQ12879 1464 aa11.09□□□□□ -0.63
UBR4-214ENST00000486515 TNIKQ9UKE5 1360 aa11.07□□□□□ -0.64
UBR4-214ENST00000486515 PRG4Q92954 1404 aaPredicted RBP11.06□□□□□ -0.64
UBR4-214ENST00000486515 HSPA2P54652 639 aa11.05□□□□□ -0.64
UBR4-214ENST00000486515 SHROOM2Q13796 1616 aa11.05□□□□□ -0.64
UBR4-214ENST00000486515 PTPRMP28827 1452 aa11.05□□□□□ -0.64
UBR4-214ENST00000486515 NUP160Q12769 1436 aa11.04□□□□□ -0.64
UBR4-214ENST00000486515 CTTNBP2Q8WZ74 1663 aa11.02□□□□□ -0.64
UBR4-214ENST00000486515 JPH4Q96JJ6 628 aa11.02□□□□□ -0.65
UBR4-214ENST00000486515 KIAA0586Q9BVV6 1533 aa11.02□□□□□ -0.65
UBR4-214ENST00000486515 ADCY10Q96PN6 1610 aa11.01□□□□□ -0.65
UBR4-214ENST00000486515 PPRC1Q5VV67 1664 aaKnown RBP11□□□□□ -0.65
UBR4-214ENST00000486515 CARMIL2Q6F5E8 1435 aa11□□□□□ -0.65
UBR4-214ENST00000486515 CLIP1P30622 1438 aa10.97□□□□□ -0.65
UBR4-214ENST00000486515 CEP162Q5TB80 1403 aa10.97□□□□□ -0.65
UBR4-214ENST00000486515 IQGAP2Q13576 1575 aa10.96□□□□□ -0.65
UBR4-214ENST00000486515 TTBK1Q5TCY1 1321 aaPredicted RBP10.96□□□□□ -0.65
UBR4-214ENST00000486515 P3H3Q8IVL6 736 aa10.96□□□□□ -0.65
UBR4-214ENST00000486515 TEX14Q8IWB6 1497 aa10.94□□□□□ -0.66
UBR4-214ENST00000486515 APLP2Q06481 763 aa10.94□□□□□ -0.66
UBR4-214ENST00000486515 GLI2P10070 1586 aa10.94□□□□□ -0.66
UBR4-214ENST00000486515 ATP1B4Q9UN42 357 aaPredicted RBP10.93□□□□□ -0.66
UBR4-214ENST00000486515 EFCAB5A4FU69 1503 aa10.9□□□□□ -0.66
UBR4-214ENST00000486515 PLB1Q6P1J6 1458 aa10.9□□□□□ -0.66
UBR4-214ENST00000486515 ASXL2Q76L83 1435 aa10.9□□□□□ -0.66
UBR4-214ENST00000486515 UGGT2Q9NYU1 1516 aa10.89□□□□□ -0.67
UBR4-214ENST00000486515 FMN1Q68DA7 1419 aa10.89□□□□□ -0.67
UBR4-214ENST00000486515 PTPRGP23470 1445 aa10.87□□□□□ -0.67
UBR4-214ENST00000486515 ADAMTSL3P82987 1691 aa10.87□□□□□ -0.67
UBR4-214ENST00000486515 FHOD3Q2V2M9 1422 aa10.86□□□□□ -0.67
UBR4-214ENST00000486515 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.86□□□□□ -0.67
UBR4-214ENST00000486515 HNRNPUL2Q1KMD3 747 aaKnown RBP10.86□□□□□ -0.67
UBR4-214ENST00000486515 PHF23Q9BUL5 403 aaPredicted RBP10.86□□□□□ -0.67
UBR4-214ENST00000486515 ARHGAP35Q9NRY4 1499 aa10.86□□□□□ -0.67
UBR4-214ENST00000486515 DMRT2Q9Y5R5 561 aa10.85□□□□□ -0.67
UBR4-214ENST00000486515 MED1Q15648 1581 aaPredicted RBP10.85□□□□□ -0.67
UBR4-214ENST00000486515 SAMD9Q5K651 1589 aa10.83□□□□□ -0.68
UBR4-214ENST00000486515 PLPPR3Q6T4P5 718 aa10.83□□□□□ -0.68
UBR4-214ENST00000486515 KIAA0556O60303 1618 aa10.83□□□□□ -0.68
UBR4-214ENST00000486515 DISP1Q96F81 1524 aa10.83□□□□□ -0.68
UBR4-214ENST00000486515 VPS8Q8N3P4 1428 aa10.82□□□□□ -0.68
UBR4-214ENST00000486515 MAP3K4Q9Y6R4 1608 aa10.81□□□□□ -0.68
UBR4-214ENST00000486515 CDK11AQ9UQ88 783 aaPredicted RBP10.81□□□□□ -0.68
UBR4-214ENST00000486515 EPRSP07814 1512 aaKnown RBP10.8□□□□□ -0.68
UBR4-214ENST00000486515 ABCC2Q92887 1545 aa10.8□□□□□ -0.68
UBR4-214ENST00000486515 ARID4BQ4LE39 1312 aaPredicted RBP10.79□□□□□ -0.68
UBR4-214ENST00000486515 YEATS2Q9ULM3 1422 aa10.78□□□□□ -0.68
UBR4-214ENST00000486515 MADDQ8WXG6 1647 aa10.78□□□□□ -0.68
UBR4-214ENST00000486515 UBAP1LF5GYI3 381 aa10.78□□□□□ -0.68
UBR4-214ENST00000486515 IQSEC2Q5JU85 1478 aa10.78□□□□□ -0.68
UBR4-214ENST00000486515 UACAQ9BZF9 1416 aa10.77□□□□□ -0.68
UBR4-214ENST00000486515 CASKIN1Q8WXD9 1431 aa10.76□□□□□ -0.69
UBR4-214ENST00000486515 ARID3CA6NKF2 412 aa10.76□□□□□ -0.69
UBR4-214ENST00000486515 FYCO1Q9BQS8 1478 aa10.75□□□□□ -0.69
UBR4-214ENST00000486515 PLEKHD1A6NEE1 506 aa10.74□□□□□ -0.69
UBR4-214ENST00000486515 LRRIQ1Q96JM4 1722 aa10.73□□□□□ -0.69
UBR4-214ENST00000486515 CCDC18Q5T9S5 1454 aa10.73□□□□□ -0.69
UBR4-214ENST00000486515 SRCAPQ6ZRS2 3230 aa10.72□□□□□ -0.69
UBR4-214ENST00000486515 HSPA1LP34931 641 aa10.72□□□□□ -0.69
UBR4-214ENST00000486515 HECW1Q76N89 1606 aa10.72□□□□□ -0.69
UBR4-214ENST00000486515 BCORL1Q5H9F3 1711 aa10.72□□□□□ -0.69
UBR4-214ENST00000486515 MTUS2Q5JR59 1369 aa10.71□□□□□ -0.69
UBR4-214ENST00000486515 LTBP4Q8N2S1 1624 aa10.71□□□□□ -0.69
UBR4-214ENST00000486515 RAPGEF6Q8TEU7 1601 aa10.7□□□□□ -0.7
UBR4-214ENST00000486515 RIMS1Q86UR5 1692 aaKnown RBP10.69□□□□□ -0.7
UBR4-214ENST00000486515 UHRF1BP1LA0JNW5 1464 aa10.69□□□□□ -0.7
UBR4-214ENST00000486515 MAGI3Q5TCQ9 1506 aa10.68□□□□□ -0.7
UBR4-214ENST00000486515 CD109Q6YHK3 1445 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms