RNA–Protein interactions for RNA: ENST00000484087.5

BRCA1-216, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 1,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-216ENST00000484087 RIMBP3Q9UFD9 1639 aa11.88□□□□□ -0.51
BRCA1-216ENST00000484087 ADAMTS12P58397 1594 aa11.85□□□□□ -0.51
BRCA1-216ENST00000484087 MAGI1Q96QZ7 1491 aaPredicted RBP11.85□□□□□ -0.51
BRCA1-216ENST00000484087 TRIM41Q8WV44 630 aa11.83□□□□□ -0.52
BRCA1-216ENST00000484087 ARHGEF11O15085 1522 aa11.83□□□□□ -0.52
BRCA1-216ENST00000484087 SYNJ2O15056 1496 aa11.83□□□□□ -0.52
BRCA1-216ENST00000484087 CLASP1Q7Z460 1538 aa11.82□□□□□ -0.52
BRCA1-216ENST00000484087 CHMP7Q8WUX9 453 aaPredicted RBP11.8□□□□□ -0.52
BRCA1-216ENST00000484087 CEP170Q5SW79 1584 aa11.78□□□□□ -0.52
BRCA1-216ENST00000484087 GRIN2AQ12879 1464 aa11.78□□□□□ -0.52
BRCA1-216ENST00000484087 ERICH3Q5RHP9 1530 aa11.77□□□□□ -0.53
BRCA1-216ENST00000484087 ARAP1Q96P48 1450 aa11.75□□□□□ -0.53
BRCA1-216ENST00000484087 ERCC6L2Q5T890 1561 aa11.74□□□□□ -0.53
BRCA1-216ENST00000484087 RUSC2Q8N2Y8 1516 aa11.73□□□□□ -0.53
BRCA1-216ENST00000484087 FHAD1B1AJZ9 1412 aa11.73□□□□□ -0.53
BRCA1-216ENST00000484087 NUP160Q12769 1436 aa11.69□□□□□ -0.54
BRCA1-216ENST00000484087 KIF27Q86VH2 1401 aa11.69□□□□□ -0.54
BRCA1-216ENST00000484087 CUL7Q14999 1698 aa11.69□□□□□ -0.54
BRCA1-216ENST00000484087 POTEHQ6S545 545 aa11.69□□□□□ -0.54
BRCA1-216ENST00000484087 CYB5RLQ6IPT4 315 aa11.68□□□□□ -0.54
BRCA1-216ENST00000484087 IGF1RP08069 1367 aa11.67□□□□□ -0.54
BRCA1-216ENST00000484087 SHROOM2Q13796 1616 aa11.67□□□□□ -0.54
BRCA1-216ENST00000484087 NCBP3Q53F19 620 aaKnown RBP11.64□□□□□ -0.55
BRCA1-216ENST00000484087 CARMIL1Q5VZK9 1371 aa11.6□□□□□ -0.55
BRCA1-216ENST00000484087 PRG4Q92954 1404 aaPredicted RBP11.58□□□□□ -0.56
BRCA1-216ENST00000484087 KIAA0586Q9BVV6 1533 aa11.54□□□□□ -0.56
BRCA1-216ENST00000484087 CTTNBP2Q8WZ74 1663 aa11.54□□□□□ -0.56
BRCA1-216ENST00000484087 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.54□□□□□ -0.567e-7■■□□□ 12.5
BRCA1-216ENST00000484087 IQGAP2Q13576 1575 aa11.54□□□□□ -0.56
BRCA1-216ENST00000484087 RAPGEF2Q9Y4G8 1499 aa11.54□□□□□ -0.56
BRCA1-216ENST00000484087 JPH4Q96JJ6 628 aa11.53□□□□□ -0.56
BRCA1-216ENST00000484087 TTBK1Q5TCY1 1321 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-216ENST00000484087 KCNA4P22459 653 aa11.51□□□□□ -0.57
BRCA1-216ENST00000484087 FAM9AQ8IZU1 332 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-216ENST00000484087 ADCY10Q96PN6 1610 aa11.49□□□□□ -0.57
BRCA1-216ENST00000484087 PRXQ9BXM0 1461 aa11.48□□□□□ -0.57
BRCA1-216ENST00000484087 NPM3O75607 178 aaKnown RBP11.47□□□□□ -0.57
BRCA1-216ENST00000484087 TRHP20396 242 aaPredicted RBP11.47□□□□□ -0.57
BRCA1-216ENST00000484087 EHMT2Q96KQ7 1210 aa11.47□□□□□ -0.57
BRCA1-216ENST00000484087 DISP1Q96F81 1524 aa11.46□□□□□ -0.57
BRCA1-216ENST00000484087 KIAA0556O60303 1618 aa11.46□□□□□ -0.58
BRCA1-216ENST00000484087 UGGT2Q9NYU1 1516 aa11.43□□□□□ -0.58
BRCA1-216ENST00000484087 KIF13AQ9H1H9 1805 aa11.43□□□□□ -0.58
BRCA1-216ENST00000484087 CSRNP3Q8WYN3 585 aa11.41□□□□□ -0.58
BRCA1-216ENST00000484087 RANGAP1P46060 587 aaPredicted RBP11.39□□□□□ -0.59
BRCA1-216ENST00000484087 CARMIL2Q6F5E8 1435 aa11.39□□□□□ -0.59
BRCA1-216ENST00000484087 PTPRGP23470 1445 aa11.38□□□□□ -0.59
BRCA1-216ENST00000484087 TNIKQ9UKE5 1360 aa11.38□□□□□ -0.59
BRCA1-216ENST00000484087 KIF21BO75037 1637 aa11.38□□□□□ -0.59
BRCA1-216ENST00000484087 EEA1Q15075 1411 aa11.37□□□□□ -0.59
BRCA1-216ENST00000484087 P3H3Q8IVL6 736 aa11.36□□□□□ -0.59
BRCA1-216ENST00000484087 ABCC2Q92887 1545 aa11.35□□□□□ -0.59
BRCA1-216ENST00000484087 DIP2BQ9P265 1576 aa11.35□□□□□ -0.59
BRCA1-216ENST00000484087 PLB1Q6P1J6 1458 aa11.35□□□□□ -0.59
BRCA1-216ENST00000484087 ZCCHC11Q5TAX3 1644 aaKnown RBP11.35□□□□□ -0.59
BRCA1-216ENST00000484087 SAMD9Q5K651 1589 aa11.34□□□□□ -0.59
BRCA1-216ENST00000484087 TSPOAP1O95153 1857 aa11.34□□□□□ -0.59
BRCA1-216ENST00000484087 MAPKBP1O60336 1514 aa11.33□□□□□ -0.6
BRCA1-216ENST00000484087 UACAQ9BZF9 1416 aa11.32□□□□□ -0.6
BRCA1-216ENST00000484087 ABCA8O94911 1581 aa11.31□□□□□ -0.6
BRCA1-216ENST00000484087 ARID3CA6NKF2 412 aa11.31□□□□□ -0.6
BRCA1-216ENST00000484087 GOLGA3Q08378 1498 aa11.31□□□□□ -0.6
BRCA1-216ENST00000484087 FHOD3Q2V2M9 1422 aa11.3□□□□□ -0.6
BRCA1-216ENST00000484087 U3KPZ7 1027 aaPredicted RBP11.3□□□□□ -0.6
BRCA1-216ENST00000484087 UHRF1BP1LA0JNW5 1464 aa11.29□□□□□ -0.6
BRCA1-216ENST00000484087 ABCC10Q5T3U5 1492 aa11.29□□□□□ -0.6
BRCA1-216ENST00000484087 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
BRCA1-216ENST00000484087 ASXL2Q76L83 1435 aa11.28□□□□□ -0.6
BRCA1-216ENST00000484087 FAM69CQ0P6D2 419 aa11.27□□□□□ -0.6
BRCA1-216ENST00000484087 KDM5BQ9UGL1 1544 aa11.27□□□□□ -0.61
BRCA1-216ENST00000484087 RAPGEF6Q8TEU7 1601 aa11.26□□□□□ -0.61
BRCA1-216ENST00000484087 PPRC1Q5VV67 1664 aaKnown RBP11.26□□□□□ -0.61
BRCA1-216ENST00000484087 UBTFP17480 764 aaKnown RBP11.25□□□□□ -0.61
BRCA1-216ENST00000484087 DSG3P32926 999 aa11.25□□□□□ -0.61
BRCA1-216ENST00000484087 EFCAB5A4FU69 1503 aa11.22□□□□□ -0.61
BRCA1-216ENST00000484087 EPRSP07814 1512 aaKnown RBP11.22□□□□□ -0.61
BRCA1-216ENST00000484087 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.62
BRCA1-216ENST00000484087 MAP3K4Q9Y6R4 1608 aa11.2□□□□□ -0.62
BRCA1-216ENST00000484087 NUP153P49790 1475 aaKnown RBP11.2□□□□□ -0.62
BRCA1-216ENST00000484087 WDR7Q9Y4E6 1490 aa11.2□□□□□ -0.62
BRCA1-216ENST00000484087 LRRIQ1Q96JM4 1722 aa11.2□□□□□ -0.62
BRCA1-216ENST00000484087 ATP10BO94823 1461 aa11.19□□□□□ -0.62
BRCA1-216ENST00000484087 SPINK5Q9NQ38 1064 aaPredicted RBP11.19□□□□□ -0.62
BRCA1-216ENST00000484087 KDM6BO15054 1643 aa11.18□□□□□ -0.62
BRCA1-216ENST00000484087 GLI2P10070 1586 aa11.18□□□□□ -0.62
BRCA1-216ENST00000484087 CDK13Q14004 1512 aaKnown RBP11.18□□□□□ -0.62
BRCA1-216ENST00000484087 CAPN15O75808 1086 aa11.17□□□□□ -0.62
BRCA1-216ENST00000484087 KCNH8Q96L42 1107 aa11.16□□□□□ -0.62
BRCA1-216ENST00000484087 PCF11O94913 1555 aaKnown RBP11.15□□□□□ -0.62
BRCA1-216ENST00000484087 CFAP43Q8NDM7 1665 aa11.14□□□□□ -0.63
BRCA1-216ENST00000484087 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.13□□□□□ -0.63
BRCA1-216ENST00000484087 HNRNPUL2Q1KMD3 747 aaKnown RBP11.13□□□□□ -0.63
BRCA1-216ENST00000484087 HECW1Q76N89 1606 aa11.12□□□□□ -0.63
BRCA1-216ENST00000484087 ATP1B4Q9UN42 357 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-216ENST00000484087 COL17A1Q9UMD9 1497 aaPredicted RBP11.11□□□□□ -0.63
BRCA1-216ENST00000484087 TTC37Q6PGP7 1564 aa11.11□□□□□ -0.63
BRCA1-216ENST00000484087 ABCA9Q8IUA7 1624 aa11.1□□□□□ -0.63
BRCA1-216ENST00000484087 SLC4A1APQ9BWU0 796 aaKnown RBP11.1□□□□□ -0.63
BRCA1-216ENST00000484087 CLIP1P30622 1438 aa11.08□□□□□ -0.64
BRCA1-216ENST00000484087 CD109Q6YHK3 1445 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms