RNA–Protein interactions for RNA: ENST00000481739.1

RXRA-202, Transcript of retinoid X receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RXRA, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRA-202ENST00000481739 VPS8Q8N3P4 1428 aa24.46■■□□□ 1.51
RXRA-202ENST00000481739 CTTNBP2Q8WZ74 1663 aa24.44■■□□□ 1.5
RXRA-202ENST00000481739 FBLN2P98095 1184 aa24.43■■□□□ 1.5
RXRA-202ENST00000481739 CHMP7Q8WUX9 453 aaPredicted RBP24.43■■□□□ 1.5
RXRA-202ENST00000481739 SYNJ2O15056 1496 aa24.41■■□□□ 1.5
RXRA-202ENST00000481739 GRIN2AQ12879 1464 aa24.38■■□□□ 1.49
RXRA-202ENST00000481739 ARHGAP35Q9NRY4 1499 aa24.29■■□□□ 1.48
RXRA-202ENST00000481739 ARAP1Q96P48 1450 aa24.26■■□□□ 1.47
RXRA-202ENST00000481739 IQGAP2Q13576 1575 aa24.26■■□□□ 1.47
RXRA-202ENST00000481739 PPARGC1BQ86YN6 1023 aaKnown RBP24.26■■□□□ 1.47
RXRA-202ENST00000481739 P3H3Q8IVL6 736 aa24.24■■□□□ 1.47
RXRA-202ENST00000481739 CHD1O14646 1710 aa24.24■■□□□ 1.47
RXRA-202ENST00000481739 APLP2Q06481 763 aa24.24■■□□□ 1.47
RXRA-202ENST00000481739 CEP170Q5SW79 1584 aa24.23■■□□□ 1.47
RXRA-202ENST00000481739 KIAA0586Q9BVV6 1533 aa24.22■■□□□ 1.47
RXRA-202ENST00000481739 EFCAB5A4FU69 1503 aa24.21■■□□□ 1.47
RXRA-202ENST00000481739 ZEB1P37275 1124 aaPredicted RBP24.2■■□□□ 1.46
RXRA-202ENST00000481739 NUP160Q12769 1436 aa24.18■■□□□ 1.46
RXRA-202ENST00000481739 FHOD3Q2V2M9 1422 aa24.14■■□□□ 1.46
RXRA-202ENST00000481739 SAMD9Q5K651 1589 aa24.14■■□□□ 1.45
RXRA-202ENST00000481739 UGGT2Q9NYU1 1516 aa24.1■■□□□ 1.45
RXRA-202ENST00000481739 JPH4Q96JJ6 628 aa24.05■■□□□ 1.44
RXRA-202ENST00000481739 MAP3K1Q13233 1512 aa24.02■■□□□ 1.44
RXRA-202ENST00000481739 FMN1Q68DA7 1419 aa24.01■■□□□ 1.43
RXRA-202ENST00000481739 ATP1B4Q9UN42 357 aaPredicted RBP24■■□□□ 1.43
RXRA-202ENST00000481739 KIAA0556O60303 1618 aa24■■□□□ 1.43
RXRA-202ENST00000481739 DISP1Q96F81 1524 aa24■■□□□ 1.43
RXRA-202ENST00000481739 TTBK1Q5TCY1 1321 aaPredicted RBP24■■□□□ 1.43
RXRA-202ENST00000481739 CARMIL2Q6F5E8 1435 aa23.97■■□□□ 1.43
RXRA-202ENST00000481739 PCF11O94913 1555 aaKnown RBP23.96■■□□□ 1.43
RXRA-202ENST00000481739 CASKIN1Q8WXD9 1431 aa23.92■■□□□ 1.42
RXRA-202ENST00000481739 PRG4Q92954 1404 aaPredicted RBP23.92■■□□□ 1.42
RXRA-202ENST00000481739 FYCO1Q9BQS8 1478 aa23.91■■□□□ 1.42
RXRA-202ENST00000481739 CLASP1Q7Z460 1538 aa23.91■■□□□ 1.42
RXRA-202ENST00000481739 SHROOM2Q13796 1616 aa23.88■■□□□ 1.41
RXRA-202ENST00000481739 TIAM1Q13009 1591 aa23.87■■□□□ 1.41
RXRA-202ENST00000481739 OSCARQ8IYS5 282 aa23.86■■□□□ 1.41
RXRA-202ENST00000481739 KANK4Q5T7N3 995 aaPredicted RBP23.82■■□□□ 1.4
RXRA-202ENST00000481739 RRBP1Q9P2E9 1410 aaKnown RBP23.8■■□□□ 1.4
RXRA-202ENST00000481739 CCER1Q8TC90 406 aaPredicted RBP23.8■■□□□ 1.4
RXRA-202ENST00000481739 CFAP43Q8NDM7 1665 aa23.79■■□□□ 1.4
RXRA-202ENST00000481739 HECW1Q76N89 1606 aa23.79■■□□□ 1.4
RXRA-202ENST00000481739 ERCC6L2Q5T890 1561 aa23.76■■□□□ 1.39
RXRA-202ENST00000481739 LRRC9Q6ZRR7 1453 aa23.76■■□□□ 1.39
RXRA-202ENST00000481739 RAPGEF6Q8TEU7 1601 aa23.76■■□□□ 1.39
RXRA-202ENST00000481739 PTPRGP23470 1445 aa23.75■■□□□ 1.39
RXRA-202ENST00000481739 LRRIQ1Q96JM4 1722 aa23.75■■□□□ 1.39
RXRA-202ENST00000481739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.75■■□□□ 1.39
RXRA-202ENST00000481739 ARID3CA6NKF2 412 aa23.74■■□□□ 1.39
RXRA-202ENST00000481739 PLB1Q6P1J6 1458 aa23.73■■□□□ 1.39
RXRA-202ENST00000481739 CCDC18Q5T9S5 1454 aa23.72■■□□□ 1.39
RXRA-202ENST00000481739 EPRSP07814 1512 aaKnown RBP23.69■■□□□ 1.38
RXRA-202ENST00000481739 CCNB3Q8WWL7 1395 aa23.68■■□□□ 1.38
RXRA-202ENST00000481739 HNRNPUL2Q1KMD3 747 aaKnown RBP23.67■■□□□ 1.38
RXRA-202ENST00000481739 NUP153P49790 1475 aaKnown RBP23.67■■□□□ 1.38
RXRA-202ENST00000481739 CDK13Q14004 1512 aaKnown RBP23.66■■□□□ 1.38
RXRA-202ENST00000481739 MTUS2Q5JR59 1369 aa23.65■■□□□ 1.38
RXRA-202ENST00000481739 ABCA8O94911 1581 aa23.65■■□□□ 1.38
RXRA-202ENST00000481739 UACAQ9BZF9 1416 aa23.59■■□□□ 1.37
RXRA-202ENST00000481739 CDK11AQ9UQ88 783 aaPredicted RBP23.56■■□□□ 1.36
RXRA-202ENST00000481739 EHBP1L1Q8N3D4 1523 aa23.56■■□□□ 1.36
RXRA-202ENST00000481739 MAGI3Q5TCQ9 1506 aa23.55■■□□□ 1.36
RXRA-202ENST00000481739 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.53■■□□□ 1.361e-7■■■■■ 37.5
RXRA-202ENST00000481739 PHLDB1Q86UU1 1377 aa23.52■■□□□ 1.36
RXRA-202ENST00000481739 SUPT6HQ7KZ85 1726 aaKnown RBP23.52■■□□□ 1.36
RXRA-202ENST00000481739 ABCC2Q92887 1545 aa23.51■■□□□ 1.35
RXRA-202ENST00000481739 ATP10BO94823 1461 aa23.51■■□□□ 1.35
RXRA-202ENST00000481739 CLSPNQ9HAW4 1339 aa23.5■■□□□ 1.35
RXRA-202ENST00000481739 NCOA2Q15596 1464 aa23.47■■□□□ 1.35
RXRA-202ENST00000481739 PLEKHD1A6NEE1 506 aa23.46■■□□□ 1.35
RXRA-202ENST00000481739 UHRF1BP1LA0JNW5 1464 aa23.44■■□□□ 1.34
RXRA-202ENST00000481739 TROQ12816 1431 aaPredicted RBP23.43■■□□□ 1.34
RXRA-202ENST00000481739 ARHGEF11O15085 1522 aa23.42■■□□□ 1.34
RXRA-202ENST00000481739 ADCY10Q96PN6 1610 aa23.38■■□□□ 1.33
RXRA-202ENST00000481739 FGD6Q6ZV73 1430 aa23.38■■□□□ 1.33
RXRA-202ENST00000481739 ZCCHC11Q5TAX3 1644 aaKnown RBP23.37■■□□□ 1.33
RXRA-202ENST00000481739 FAM50AQ14320 339 aaKnown RBP23.37■■□□□ 1.33
RXRA-202ENST00000481739 MYOM3Q5VTT5 1437 aa23.36■■□□□ 1.33
RXRA-202ENST00000481739 KDM5BQ9UGL1 1544 aa23.35■■□□□ 1.33
RXRA-202ENST00000481739 RIMBP3CA6NJZ7 1639 aa23.34■■□□□ 1.33
RXRA-202ENST00000481739 RIMBP3BA6NNM3 1639 aa23.34■■□□□ 1.33
RXRA-202ENST00000481739 KIF14Q15058 1648 aa23.34■■□□□ 1.33
RXRA-202ENST00000481739 RIMBP3Q9UFD9 1639 aa23.34■■□□□ 1.33
RXRA-202ENST00000481739 DHX57Q6P158 1386 aaKnown RBP23.33■■□□□ 1.33
RXRA-202ENST00000481739 ITGAEP38570 1179 aa23.31■■□□□ 1.32
RXRA-202ENST00000481739 SETD5Q9C0A6 1442 aa23.29■■□□□ 1.32
RXRA-202ENST00000481739 NPM1P06748 294 aaKnown RBP eCLIP23.29■■□□□ 1.32
RXRA-202ENST00000481739 CYB5RLQ6IPT4 315 aa23.27■■□□□ 1.32
RXRA-202ENST00000481739 KCNH8Q96L42 1107 aa23.27■■□□□ 1.32
RXRA-202ENST00000481739 RAB3GAP2Q9H2M9 1393 aa23.25■■□□□ 1.31
RXRA-202ENST00000481739 PTPN23Q9H3S7 1636 aa23.25■■□□□ 1.31
RXRA-202ENST00000481739 ITSN2Q9NZM3 1697 aa23.23■■□□□ 1.31
RXRA-202ENST00000481739 MIA2Q96PC5 1412 aa23.23■■□□□ 1.31
RXRA-202ENST00000481739 TCOF1Q13428 1488 aaKnown RBP23.21■■□□□ 1.31
RXRA-202ENST00000481739 ABCC10Q5T3U5 1492 aa23.21■■□□□ 1.31
RXRA-202ENST00000481739 GPATCH8Q9UKJ3 1502 aaKnown RBP23.21■■□□□ 1.31
RXRA-202ENST00000481739 CFDP1Q9UEE9 299 aaPredicted RBP23.2■■□□□ 1.3
RXRA-202ENST00000481739 CDC42BPAQ5VT25 1732 aa23.18■■□□□ 1.3
RXRA-202ENST00000481739 ZNF777Q9ULD5 760 aaPredicted RBP23.17■■□□□ 1.3
RXRA-202ENST00000481739 WDR7Q9Y4E6 1490 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms