RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 CTTNBP2Q8WZ74 1663 aa16.34■□□□□ 0.21
USP39-215ENST00000481409 NUP160Q12769 1436 aa16.29■□□□□ 0.2
USP39-215ENST00000481409 KIAA0586Q9BVV6 1533 aa16.28■□□□□ 0.2
USP39-215ENST00000481409 CEP162Q5TB80 1403 aa16.27■□□□□ 0.19
USP39-215ENST00000481409 CHD1O14646 1710 aa16.25■□□□□ 0.19
USP39-215ENST00000481409 EHMT2Q96KQ7 1210 aa16.24■□□□□ 0.19
USP39-215ENST00000481409 IQGAP2Q13576 1575 aa16.24■□□□□ 0.19
USP39-215ENST00000481409 FBLN2P98095 1184 aa16.23■□□□□ 0.19
USP39-215ENST00000481409 EFCAB5A4FU69 1503 aa16.23■□□□□ 0.19
USP39-215ENST00000481409 CEP170Q5SW79 1584 aa16.22■□□□□ 0.19
USP39-215ENST00000481409 CLIP1P30622 1438 aa16.22■□□□□ 0.19
USP39-215ENST00000481409 UGGT2Q9NYU1 1516 aa16.19■□□□□ 0.18
USP39-215ENST00000481409 SAMD9Q5K651 1589 aa16.15■□□□□ 0.18
USP39-215ENST00000481409 ARHGAP35Q9NRY4 1499 aa16.13■□□□□ 0.17
USP39-215ENST00000481409 CLASP1Q7Z460 1538 aa16.13■□□□□ 0.17
USP39-215ENST00000481409 OSCARQ8IYS5 282 aa16.11■□□□□ 0.17
USP39-215ENST00000481409 JPH4Q96JJ6 628 aa16.11■□□□□ 0.17
USP39-215ENST00000481409 SHROOM2Q13796 1616 aa16.11■□□□□ 0.17
USP39-215ENST00000481409 CARMIL2Q6F5E8 1435 aa16.11■□□□□ 0.17
USP39-215ENST00000481409 POTEDQ86YR6 584 aa16.1■□□□□ 0.17
USP39-215ENST00000481409 FMN1Q68DA7 1419 aa16.07■□□□□ 0.16
USP39-215ENST00000481409 VPS8Q8N3P4 1428 aa16.07■□□□□ 0.16
USP39-215ENST00000481409 KIAA0556O60303 1618 aa16.07■□□□□ 0.16
USP39-215ENST00000481409 ARAP1Q96P48 1450 aa16.06■□□□□ 0.16
USP39-215ENST00000481409 DISP1Q96F81 1524 aa16.05■□□□□ 0.16
USP39-215ENST00000481409 RANGAP1P46060 587 aaPredicted RBP16.03■□□□□ 0.16
USP39-215ENST00000481409 PRG4Q92954 1404 aaPredicted RBP16.02■□□□□ 0.15
USP39-215ENST00000481409 FHOD3Q2V2M9 1422 aa15.99■□□□□ 0.15
USP39-215ENST00000481409 FYCO1Q9BQS8 1478 aa15.97■□□□□ 0.15
USP39-215ENST00000481409 CASKIN1Q8WXD9 1431 aa15.96■□□□□ 0.15
USP39-215ENST00000481409 MAP3K1Q13233 1512 aa15.95■□□□□ 0.14
USP39-215ENST00000481409 P3H3Q8IVL6 736 aa15.94■□□□□ 0.14
USP39-215ENST00000481409 APLP2Q06481 763 aa15.92■□□□□ 0.14
USP39-215ENST00000481409 PTPRGP23470 1445 aa15.91■□□□□ 0.14
USP39-215ENST00000481409 PCF11O94913 1555 aaKnown RBP15.9■□□□□ 0.14
USP39-215ENST00000481409 HECW1Q76N89 1606 aa15.9■□□□□ 0.14
USP39-215ENST00000481409 RAPGEF6Q8TEU7 1601 aa15.88■□□□□ 0.13
USP39-215ENST00000481409 CCDC18Q5T9S5 1454 aa15.88■□□□□ 0.13
USP39-215ENST00000481409 ABCA8O94911 1581 aa15.87■□□□□ 0.13
USP39-215ENST00000481409 ERCC6L2Q5T890 1561 aa15.84■□□□□ 0.13
USP39-215ENST00000481409 UACAQ9BZF9 1416 aa15.84■□□□□ 0.13
USP39-215ENST00000481409 UHRF1BP1LA0JNW5 1464 aa15.84■□□□□ 0.13
USP39-215ENST00000481409 TIAM1Q13009 1591 aa15.83■□□□□ 0.12
USP39-215ENST00000481409 CFAP43Q8NDM7 1665 aa15.83■□□□□ 0.12
USP39-215ENST00000481409 ARHGEF11O15085 1522 aa15.8■□□□□ 0.12
USP39-215ENST00000481409 EPRSP07814 1512 aaKnown RBP15.8■□□□□ 0.12
USP39-215ENST00000481409 ABCC2Q92887 1545 aa15.8■□□□□ 0.12
USP39-215ENST00000481409 NUP153P49790 1475 aaKnown RBP15.8■□□□□ 0.12
USP39-215ENST00000481409 PLB1Q6P1J6 1458 aa15.8■□□□□ 0.12
USP39-215ENST00000481409 CDK11AQ9UQ88 783 aaPredicted RBP15.78■□□□□ 0.12
USP39-215ENST00000481409 ATP1B4Q9UN42 357 aaPredicted RBP15.77■□□□□ 0.12
USP39-215ENST00000481409 LRRIQ1Q96JM4 1722 aa15.75■□□□□ 0.11
USP39-215ENST00000481409 LRRC9Q6ZRR7 1453 aa15.75■□□□□ 0.11
USP39-215ENST00000481409 RIMBP3CA6NJZ7 1639 aa15.74■□□□□ 0.11
USP39-215ENST00000481409 RIMBP3BA6NNM3 1639 aa15.74■□□□□ 0.11
USP39-215ENST00000481409 RIMBP3Q9UFD9 1639 aa15.74■□□□□ 0.11
USP39-215ENST00000481409 TTBK1Q5TCY1 1321 aaPredicted RBP15.73■□□□□ 0.11
USP39-215ENST00000481409 EHBP1L1Q8N3D4 1523 aa15.73■□□□□ 0.11
USP39-215ENST00000481409 KDM5BQ9UGL1 1544 aa15.73■□□□□ 0.11
USP39-215ENST00000481409 MSH5O43196 834 aa15.72■□□□□ 0.11
USP39-215ENST00000481409 ATP10BO94823 1461 aa15.71■□□□□ 0.11
USP39-215ENST00000481409 MTUS2Q5JR59 1369 aa15.71■□□□□ 0.11
USP39-215ENST00000481409 ADCY10Q96PN6 1610 aa15.69■□□□□ 0.1
USP39-215ENST00000481409 CDK13Q14004 1512 aaKnown RBP15.68■□□□□ 0.1
USP39-215ENST00000481409 PLEKHD1A6NEE1 506 aa15.67■□□□□ 0.1
USP39-215ENST00000481409 SUPT6HQ7KZ85 1726 aaKnown RBP15.67■□□□□ 0.1
USP39-215ENST00000481409 TROQ12816 1431 aaPredicted RBP15.67■□□□□ 0.1
USP39-215ENST00000481409 ZCCHC11Q5TAX3 1644 aaKnown RBP15.66■□□□□ 0.1
USP39-215ENST00000481409 KANK4Q5T7N3 995 aaPredicted RBP15.66■□□□□ 0.1
USP39-215ENST00000481409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.65■□□□□ 0.1
USP39-215ENST00000481409 HNRNPUL2Q1KMD3 747 aaKnown RBP15.65■□□□□ 0.1
USP39-215ENST00000481409 NPM1P06748 294 aaKnown RBP eCLIP15.64■□□□□ 0.09
USP39-215ENST00000481409 MAGI3Q5TCQ9 1506 aa15.62■□□□□ 0.09
USP39-215ENST00000481409 TRIM26Q12899 539 aaPredicted RBP15.61■□□□□ 0.09
USP39-215ENST00000481409 KIF14Q15058 1648 aa15.6■□□□□ 0.09
USP39-215ENST00000481409 NCOA2Q15596 1464 aa15.59■□□□□ 0.09
USP39-215ENST00000481409 CYB5RLQ6IPT4 315 aa15.58■□□□□ 0.08
USP39-215ENST00000481409 WDR7Q9Y4E6 1490 aa15.57■□□□□ 0.08
USP39-215ENST00000481409 MAPKBP1O60336 1514 aa15.57■□□□□ 0.08
USP39-215ENST00000481409 ARID3CA6NKF2 412 aa15.56■□□□□ 0.08
USP39-215ENST00000481409 PPARGC1BQ86YN6 1023 aaKnown RBP15.56■□□□□ 0.08
USP39-215ENST00000481409 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.56■□□□□ 0.08
USP39-215ENST00000481409 RRBP1Q9P2E9 1410 aaKnown RBP15.56■□□□□ 0.08
USP39-215ENST00000481409 MYOM3Q5VTT5 1437 aa15.55■□□□□ 0.08
USP39-215ENST00000481409 MIA2Q96PC5 1412 aa15.55■□□□□ 0.08
USP39-215ENST00000481409 DNAJC5Q9H3Z4 198 aa15.55■□□□□ 0.08
USP39-215ENST00000481409 ITSN2Q9NZM3 1697 aa15.54■□□□□ 0.08
USP39-215ENST00000481409 ASXL2Q76L83 1435 aa15.53■□□□□ 0.08
USP39-215ENST00000481409 CCNB3Q8WWL7 1395 aa15.53■□□□□ 0.08
USP39-215ENST00000481409 PHLDB1Q86UU1 1377 aa15.52■□□□□ 0.08
USP39-215ENST00000481409 ABCC10Q5T3U5 1492 aa15.52■□□□□ 0.07
USP39-215ENST00000481409 FGD6Q6ZV73 1430 aa15.5■□□□□ 0.07
USP39-215ENST00000481409 ARAP3Q8WWN8 1544 aa15.49■□□□□ 0.07
USP39-215ENST00000481409 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.48■□□□□ 0.07
USP39-215ENST00000481409 GPATCH8Q9UKJ3 1502 aaKnown RBP15.48■□□□□ 0.07
USP39-215ENST00000481409 TCOF1Q13428 1488 aaKnown RBP15.47■□□□□ 0.07
USP39-215ENST00000481409 ABCA9Q8IUA7 1624 aa15.47■□□□□ 0.07
USP39-215ENST00000481409 PREX2Q70Z35 1606 aa15.46■□□□□ 0.06
USP39-215ENST00000481409 CDC42BPAQ5VT25 1732 aa15.46■□□□□ 0.06
USP39-215ENST00000481409 MYO5CQ9NQX4 1742 aa15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms