RNA–Protein interactions for RNA: ENST00000479168.5

LIMS3-202, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 2

Gene LIMS3, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-202ENST00000479168 PRXQ9BXM0 1461 aa24.38■■□□□ 1.49
LIMS3-202ENST00000479168 CSRNP3Q8WYN3 585 aa24.37■■□□□ 1.49
LIMS3-202ENST00000479168 SHROOM2Q13796 1616 aa24.32■■□□□ 1.48
LIMS3-202ENST00000479168 JPH4Q96JJ6 628 aa24.3■■□□□ 1.48
LIMS3-202ENST00000479168 ARAP1Q96P48 1450 aa24.26■■□□□ 1.47
LIMS3-202ENST00000479168 PRG4Q92954 1404 aaPredicted RBP24.25■■□□□ 1.47
LIMS3-202ENST00000479168 IQGAP2Q13576 1575 aa24.25■■□□□ 1.47
LIMS3-202ENST00000479168 CYB5RLQ6IPT4 315 aa24.19■■□□□ 1.46
LIMS3-202ENST00000479168 FAM9AQ8IZU1 332 aaPredicted RBP24.19■■□□□ 1.46
LIMS3-202ENST00000479168 CARMIL2Q6F5E8 1435 aa24.18■■□□□ 1.46
LIMS3-202ENST00000479168 KIF21BO75037 1637 aa24.17■■□□□ 1.46
LIMS3-202ENST00000479168 UGGT2Q9NYU1 1516 aa24.13■■□□□ 1.45
LIMS3-202ENST00000479168 ERCC6L2Q5T890 1561 aa24.12■■□□□ 1.45
LIMS3-202ENST00000479168 CTTNBP2Q8WZ74 1663 aa24.11■■□□□ 1.45
LIMS3-202ENST00000479168 GOLGA3Q08378 1498 aa24.09■■□□□ 1.45
LIMS3-202ENST00000479168 TNIKQ9UKE5 1360 aa24.05■■□□□ 1.44
LIMS3-202ENST00000479168 DISP1Q96F81 1524 aa24.01■■□□□ 1.43
LIMS3-202ENST00000479168 PTPRGP23470 1445 aa24.01■■□□□ 1.43
LIMS3-202ENST00000479168 KIAA0556O60303 1618 aa23.99■■□□□ 1.43
LIMS3-202ENST00000479168 UBTFP17480 764 aaKnown RBP23.95■■□□□ 1.42
LIMS3-202ENST00000479168 EFCAB5A4FU69 1503 aa23.88■■□□□ 1.41
LIMS3-202ENST00000479168 NPM1P06748 294 aaKnown RBP eCLIP23.87■■□□□ 1.41
LIMS3-202ENST00000479168 SAMD9Q5K651 1589 aa23.86■■□□□ 1.41
LIMS3-202ENST00000479168 UACAQ9BZF9 1416 aa23.85■■□□□ 1.41
LIMS3-202ENST00000479168 UHRF1BP1LA0JNW5 1464 aa23.85■■□□□ 1.41
LIMS3-202ENST00000479168 TTBK1Q5TCY1 1321 aaPredicted RBP23.83■■□□□ 1.4
LIMS3-202ENST00000479168 ADCY10Q96PN6 1610 aa23.81■■□□□ 1.4
LIMS3-202ENST00000479168 ABCC2Q92887 1545 aa23.8■■□□□ 1.4
LIMS3-202ENST00000479168 EHMT2Q96KQ7 1210 aa23.8■■□□□ 1.4
LIMS3-202ENST00000479168 MAPKBP1O60336 1514 aa23.74■■□□□ 1.39
LIMS3-202ENST00000479168 RANGAP1P46060 587 aaPredicted RBP23.74■■□□□ 1.39
LIMS3-202ENST00000479168 P3H3Q8IVL6 736 aa23.72■■□□□ 1.39
LIMS3-202ENST00000479168 PLB1Q6P1J6 1458 aa23.72■■□□□ 1.39
LIMS3-202ENST00000479168 ABCA8O94911 1581 aa23.71■■□□□ 1.39
LIMS3-202ENST00000479168 FHOD3Q2V2M9 1422 aa23.71■■□□□ 1.39
LIMS3-202ENST00000479168 TRHP20396 242 aaPredicted RBP23.7■■□□□ 1.38
LIMS3-202ENST00000479168 KDM5BQ9UGL1 1544 aa23.69■■□□□ 1.38
LIMS3-202ENST00000479168 FMN1Q68DA7 1419 aa23.67■■□□□ 1.38
LIMS3-202ENST00000479168 ARHGAP35Q9NRY4 1499 aa23.66■■□□□ 1.38
LIMS3-202ENST00000479168 CLIP1P30622 1438 aa23.61■■□□□ 1.37
LIMS3-202ENST00000479168 RAPGEF6Q8TEU7 1601 aa23.61■■□□□ 1.37
LIMS3-202ENST00000479168 ABCC10Q5T3U5 1492 aa23.6■■□□□ 1.37
LIMS3-202ENST00000479168 ASXL2Q76L83 1435 aa23.59■■□□□ 1.37
LIMS3-202ENST00000479168 ZCCHC11Q5TAX3 1644 aaKnown RBP23.57■■□□□ 1.36
LIMS3-202ENST00000479168 WDR7Q9Y4E6 1490 aa23.54■■□□□ 1.36
LIMS3-202ENST00000479168 CEP162Q5TB80 1403 aa23.53■■□□□ 1.36
LIMS3-202ENST00000479168 NUP153P49790 1475 aaKnown RBP23.53■■□□□ 1.36
LIMS3-202ENST00000479168 DIP2BQ9P265 1576 aa23.52■■□□□ 1.36
LIMS3-202ENST00000479168 FAM69CQ0P6D2 419 aa23.51■■□□□ 1.35
LIMS3-202ENST00000479168 ATP10BO94823 1461 aa23.5■■□□□ 1.35
LIMS3-202ENST00000479168 HECW1Q76N89 1606 aa23.49■■□□□ 1.35
LIMS3-202ENST00000479168 GLI2P10070 1586 aa23.45■■□□□ 1.34
LIMS3-202ENST00000479168 EPRSP07814 1512 aaKnown RBP23.45■■□□□ 1.34
LIMS3-202ENST00000479168 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.45■■□□□ 1.34
LIMS3-202ENST00000479168 HNRNPUL2Q1KMD3 747 aaKnown RBP23.45■■□□□ 1.34
LIMS3-202ENST00000479168 CASKIN1Q8WXD9 1431 aa23.43■■□□□ 1.34
LIMS3-202ENST00000479168 LOC105371045A0A1W2PR82 267 aa23.43■■□□□ 1.34
LIMS3-202ENST00000479168 FYCO1Q9BQS8 1478 aa23.43■■□□□ 1.34
LIMS3-202ENST00000479168 ARID3CA6NKF2 412 aa23.42■■□□□ 1.34
LIMS3-202ENST00000479168 ATP1B4Q9UN42 357 aaPredicted RBP23.4■■□□□ 1.34
LIMS3-202ENST00000479168 CDK11AQ9UQ88 783 aaPredicted RBP23.4■■□□□ 1.34
LIMS3-202ENST00000479168 CCDC18Q5T9S5 1454 aa23.4■■□□□ 1.34
LIMS3-202ENST00000479168 KIF13AQ9H1H9 1805 aa23.39■■□□□ 1.33
LIMS3-202ENST00000479168 PLEKHD1A6NEE1 506 aa23.39■■□□□ 1.33
LIMS3-202ENST00000479168 PCF11O94913 1555 aaKnown RBP23.36■■□□□ 1.33
LIMS3-202ENST00000479168 CDK13Q14004 1512 aaKnown RBP23.33■■□□□ 1.33
LIMS3-202ENST00000479168 TEX14Q8IWB6 1497 aa23.32■■□□□ 1.32
LIMS3-202ENST00000479168 KCNH8Q96L42 1107 aa23.32■■□□□ 1.32
LIMS3-202ENST00000479168 MAP3K4Q9Y6R4 1608 aa23.29■■□□□ 1.32
LIMS3-202ENST00000479168 CD109Q6YHK3 1445 aa23.28■■□□□ 1.32
LIMS3-202ENST00000479168 CFAP43Q8NDM7 1665 aa23.27■■□□□ 1.32
LIMS3-202ENST00000479168 VPS8Q8N3P4 1428 aa23.26■■□□□ 1.31
LIMS3-202ENST00000479168 MAGI3Q5TCQ9 1506 aa23.26■■□□□ 1.31
LIMS3-202ENST00000479168 TROQ12816 1431 aaPredicted RBP23.25■■□□□ 1.31
LIMS3-202ENST00000479168 ABCA9Q8IUA7 1624 aa23.25■■□□□ 1.31
LIMS3-202ENST00000479168 KIF14Q15058 1648 aa23.19■■□□□ 1.3
LIMS3-202ENST00000479168 PHLDB1Q86UU1 1377 aa23.18■■□□□ 1.3
LIMS3-202ENST00000479168 TSPOAP1O95153 1857 aa23.15■■□□□ 1.3
LIMS3-202ENST00000479168 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.14■■□□□ 1.3
LIMS3-202ENST00000479168 PPRC1Q5VV67 1664 aaKnown RBP23.14■■□□□ 1.29
LIMS3-202ENST00000479168 MTUS2Q5JR59 1369 aa23.14■■□□□ 1.29
LIMS3-202ENST00000479168 KDM6BO15054 1643 aa23.13■■□□□ 1.29
LIMS3-202ENST00000479168 NEO1Q92859 1461 aa23.12■■□□□ 1.29
LIMS3-202ENST00000479168 LRRIQ1Q96JM4 1722 aa23.12■■□□□ 1.29
LIMS3-202ENST00000479168 TTC37Q6PGP7 1564 aa23.1■■□□□ 1.29
LIMS3-202ENST00000479168 CFAP74Q9C0B2 1584 aa23.1■■□□□ 1.29
LIMS3-202ENST00000479168 EHBP1L1Q8N3D4 1523 aa23.09■■□□□ 1.29
LIMS3-202ENST00000479168 ARAP3Q8WWN8 1544 aa23.09■■□□□ 1.29
LIMS3-202ENST00000479168 MAP3K1Q13233 1512 aa23.08■■□□□ 1.29
LIMS3-202ENST00000479168 PLCH2O75038 1416 aa23.08■■□□□ 1.28
LIMS3-202ENST00000479168 FANCAO15360 1455 aa23.06■■□□□ 1.28
LIMS3-202ENST00000479168 APLP2Q06481 763 aa23.06■■□□□ 1.28
LIMS3-202ENST00000479168 TIAM1Q13009 1591 aa23.04■■□□□ 1.28
LIMS3-202ENST00000479168 EFCAB2Q5VUJ9 269 aa23.01■■□□□ 1.27
LIMS3-202ENST00000479168 MYO5CQ9NQX4 1742 aa22.99■■□□□ 1.27
LIMS3-202ENST00000479168 ARHGAP5Q13017 1502 aa22.98■■□□□ 1.27
LIMS3-202ENST00000479168 AKNAQ7Z591 1439 aa22.98■■□□□ 1.27
LIMS3-202ENST00000479168 CCNB3Q8WWL7 1395 aa22.97■■□□□ 1.27
LIMS3-202ENST00000479168 LRRC9Q6ZRR7 1453 aa22.97■■□□□ 1.27
LIMS3-202ENST00000479168 PREX2Q70Z35 1606 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms