RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 TNIKQ9UKE5 1360 aa21.41■■□□□ 1.02
CHD3-210ENST00000479080 CTTNBP2Q8WZ74 1663 aa21.38■■□□□ 1.01
CHD3-210ENST00000479080 UBTFP17480 764 aaKnown RBP21.36■■□□□ 1.01
CHD3-210ENST00000479080 CLASP1Q7Z460 1538 aa21.35■■□□□ 1.01
CHD3-210ENST00000479080 KIAA0586Q9BVV6 1533 aa21.34■■□□□ 1.01
CHD3-210ENST00000479080 IQGAP2Q13576 1575 aa21.31■■□□□ 1
CHD3-210ENST00000479080 CEP162Q5TB80 1403 aa21.27■■□□□ 1
CHD3-210ENST00000479080 UGGT2Q9NYU1 1516 aa21.24■□□□□ 0.99
CHD3-210ENST00000479080 SHROOM2Q13796 1616 aa21.24■□□□□ 0.99
CHD3-210ENST00000479080 ARHGAP35Q9NRY4 1499 aa21.21■□□□□ 0.99
CHD3-210ENST00000479080 SAMD9Q5K651 1589 aa21.21■□□□□ 0.99
CHD3-210ENST00000479080 CLIP1P30622 1438 aa21.2■□□□□ 0.98
CHD3-210ENST00000479080 DISP1Q96F81 1524 aa21.19■□□□□ 0.98
CHD3-210ENST00000479080 OSCARQ8IYS5 282 aa21.19■□□□□ 0.98
CHD3-210ENST00000479080 RANGAP1P46060 587 aaPredicted RBP21.17■□□□□ 0.98
CHD3-210ENST00000479080 ERCC6L2Q5T890 1561 aa21.17■□□□□ 0.98
CHD3-210ENST00000479080 ARAP1Q96P48 1450 aa21.16■□□□□ 0.98
CHD3-210ENST00000479080 JPH4Q96JJ6 628 aa21.16■□□□□ 0.98
CHD3-210ENST00000479080 KIAA0556O60303 1618 aa21.15■□□□□ 0.98
CHD3-210ENST00000479080 EFCAB5A4FU69 1503 aa21.14■□□□□ 0.98
CHD3-210ENST00000479080 PRG4Q92954 1404 aaPredicted RBP21.12■□□□□ 0.97
CHD3-210ENST00000479080 FHOD3Q2V2M9 1422 aa21.11■□□□□ 0.97
CHD3-210ENST00000479080 P3H3Q8IVL6 736 aa21.06■□□□□ 0.96
CHD3-210ENST00000479080 CARMIL2Q6F5E8 1435 aa21.01■□□□□ 0.95
CHD3-210ENST00000479080 ARHGEF11O15085 1522 aa20.98■□□□□ 0.95
CHD3-210ENST00000479080 VPS8Q8N3P4 1428 aa20.96■□□□□ 0.95
CHD3-210ENST00000479080 PCF11O94913 1555 aaKnown RBP20.93■□□□□ 0.94
CHD3-210ENST00000479080 RIMBP3CA6NJZ7 1639 aa20.92■□□□□ 0.94
CHD3-210ENST00000479080 RIMBP3BA6NNM3 1639 aa20.92■□□□□ 0.94
CHD3-210ENST00000479080 RIMBP3Q9UFD9 1639 aa20.92■□□□□ 0.94
CHD3-210ENST00000479080 FMN1Q68DA7 1419 aa20.9■□□□□ 0.94
CHD3-210ENST00000479080 ABCA8O94911 1581 aa20.89■□□□□ 0.94
CHD3-210ENST00000479080 PLB1Q6P1J6 1458 aa20.89■□□□□ 0.94
CHD3-210ENST00000479080 PTPRGP23470 1445 aa20.89■□□□□ 0.94
CHD3-210ENST00000479080 TTBK1Q5TCY1 1321 aaPredicted RBP20.87■□□□□ 0.93
CHD3-210ENST00000479080 CASKIN1Q8WXD9 1431 aa20.87■□□□□ 0.93
CHD3-210ENST00000479080 RAPGEF6Q8TEU7 1601 aa20.85■□□□□ 0.93
CHD3-210ENST00000479080 FYCO1Q9BQS8 1478 aa20.83■□□□□ 0.93
CHD3-210ENST00000479080 NUP153P49790 1475 aaKnown RBP20.82■□□□□ 0.92
CHD3-210ENST00000479080 LRRIQ1Q96JM4 1722 aa20.82■□□□□ 0.92
CHD3-210ENST00000479080 UACAQ9BZF9 1416 aa20.79■□□□□ 0.92
CHD3-210ENST00000479080 ABCC2Q92887 1545 aa20.78■□□□□ 0.92
CHD3-210ENST00000479080 HECW1Q76N89 1606 aa20.78■□□□□ 0.92
CHD3-210ENST00000479080 ADCY10Q96PN6 1610 aa20.78■□□□□ 0.92
CHD3-210ENST00000479080 UHRF1BP1LA0JNW5 1464 aa20.77■□□□□ 0.92
CHD3-210ENST00000479080 CDK13Q14004 1512 aaKnown RBP20.74■□□□□ 0.91
CHD3-210ENST00000479080 EPRSP07814 1512 aaKnown RBP20.73■□□□□ 0.91
CHD3-210ENST00000479080 CFAP43Q8NDM7 1665 aa20.72■□□□□ 0.91
CHD3-210ENST00000479080 TIAM1Q13009 1591 aa20.71■□□□□ 0.91
CHD3-210ENST00000479080 ATP10BO94823 1461 aa20.7■□□□□ 0.9
CHD3-210ENST00000479080 ARID3CA6NKF2 412 aa20.69■□□□□ 0.9
CHD3-210ENST00000479080 MAP3K1Q13233 1512 aa20.68■□□□□ 0.9
CHD3-210ENST00000479080 MAGI3Q5TCQ9 1506 aa20.68■□□□□ 0.9
CHD3-210ENST00000479080 KDM5BQ9UGL1 1544 aa20.68■□□□□ 0.9
CHD3-210ENST00000479080 CCDC18Q5T9S5 1454 aa20.67■□□□□ 0.9
CHD3-210ENST00000479080 CYB5RLQ6IPT4 315 aa20.66■□□□□ 0.9
CHD3-210ENST00000479080 ATP1B4Q9UN42 357 aaPredicted RBP20.66■□□□□ 0.9
CHD3-210ENST00000479080 ZCCHC11Q5TAX3 1644 aaKnown RBP20.65■□□□□ 0.9
CHD3-210ENST00000479080 KANK4Q5T7N3 995 aaPredicted RBP20.63■□□□□ 0.89
CHD3-210ENST00000479080 LRRC9Q6ZRR7 1453 aa20.6■□□□□ 0.89
CHD3-210ENST00000479080 PPARGC1BQ86YN6 1023 aaKnown RBP20.57■□□□□ 0.88
CHD3-210ENST00000479080 EHBP1L1Q8N3D4 1523 aa20.54■□□□□ 0.88
CHD3-210ENST00000479080 TROQ12816 1431 aaPredicted RBP20.53■□□□□ 0.88
CHD3-210ENST00000479080 KIF14Q15058 1648 aa20.5■□□□□ 0.87
CHD3-210ENST00000479080 MAPKBP1O60336 1514 aa20.49■□□□□ 0.87
CHD3-210ENST00000479080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.49■□□□□ 0.87
CHD3-210ENST00000479080 APLP2Q06481 763 aa20.49■□□□□ 0.87
CHD3-210ENST00000479080 HNRNPUL2Q1KMD3 747 aaKnown RBP20.49■□□□□ 0.87
CHD3-210ENST00000479080 ASXL2Q76L83 1435 aa20.49■□□□□ 0.87
CHD3-210ENST00000479080 MTUS2Q5JR59 1369 aa20.48■□□□□ 0.87
CHD3-210ENST00000479080 WDR7Q9Y4E6 1490 aa20.47■□□□□ 0.87
CHD3-210ENST00000479080 NCOA2Q15596 1464 aa20.45■□□□□ 0.86
CHD3-210ENST00000479080 ABCC10Q5T3U5 1492 aa20.45■□□□□ 0.86
CHD3-210ENST00000479080 PLEKHD1A6NEE1 506 aa20.43■□□□□ 0.86
CHD3-210ENST00000479080 PHLDB1Q86UU1 1377 aa20.42■□□□□ 0.86
CHD3-210ENST00000479080 SUPT6HQ7KZ85 1726 aaKnown RBP20.41■□□□□ 0.86
CHD3-210ENST00000479080 CDK11AQ9UQ88 783 aaPredicted RBP20.41■□□□□ 0.86
CHD3-210ENST00000479080 NPM1P06748 294 aaKnown RBP eCLIP20.4■□□□□ 0.86
CHD3-210ENST00000479080 TTC37Q6PGP7 1564 aa20.4■□□□□ 0.86
CHD3-210ENST00000479080 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.4■□□□□ 0.86
CHD3-210ENST00000479080 DIP2BQ9P265 1576 aa20.34■□□□□ 0.85
CHD3-210ENST00000479080 ABCA9Q8IUA7 1624 aa20.34■□□□□ 0.85
CHD3-210ENST00000479080 KCNH8Q96L42 1107 aa20.33■□□□□ 0.85
CHD3-210ENST00000479080 GPATCH8Q9UKJ3 1502 aaKnown RBP20.32■□□□□ 0.84
CHD3-210ENST00000479080 CDC42BPAQ5VT25 1732 aa20.3■□□□□ 0.84
CHD3-210ENST00000479080 GLI2P10070 1586 aa20.3■□□□□ 0.84
CHD3-210ENST00000479080 MYOM3Q5VTT5 1437 aa20.3■□□□□ 0.84
CHD3-210ENST00000479080 PREX2Q70Z35 1606 aa20.28■□□□□ 0.84
CHD3-210ENST00000479080 FGD6Q6ZV73 1430 aa20.27■□□□□ 0.84
CHD3-210ENST00000479080 RRBP1Q9P2E9 1410 aaKnown RBP20.27■□□□□ 0.84
CHD3-210ENST00000479080 CCNB3Q8WWL7 1395 aa20.27■□□□□ 0.84
CHD3-210ENST00000479080 CDC42BPBQ9Y5S2 1711 aa20.25■□□□□ 0.83
CHD3-210ENST00000479080 MAP3K4Q9Y6R4 1608 aa20.25■□□□□ 0.83
CHD3-210ENST00000479080 KIF13AQ9H1H9 1805 aa20.25■□□□□ 0.83
CHD3-210ENST00000479080 PLCH2O75038 1416 aa20.24■□□□□ 0.83
CHD3-210ENST00000479080 ITSN2Q9NZM3 1697 aa20.23■□□□□ 0.83
CHD3-210ENST00000479080 MYO5CQ9NQX4 1742 aa20.23■□□□□ 0.83
CHD3-210ENST00000479080 TCOF1Q13428 1488 aaKnown RBP20.23■□□□□ 0.83
CHD3-210ENST00000479080 MIA2Q96PC5 1412 aa20.22■□□□□ 0.83
CHD3-210ENST00000479080 ARAP3Q8WWN8 1544 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 159.2 ms