RNA–Protein interactions for RNA: ENST00000477552.1

PTPRD-209, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 4

Gene PTPRD, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-209ENST00000477552 WDR97A6NE52 1622 aa12.31□□□□□ -0.44
PTPRD-209ENST00000477552 TTBK1Q5TCY1 1321 aaPredicted RBP12.31□□□□□ -0.44
PTPRD-209ENST00000477552 FMN1Q68DA7 1419 aa12.3□□□□□ -0.44
PTPRD-209ENST00000477552 KIF21AQ7Z4S6 1674 aa12.3□□□□□ -0.44
PTPRD-209ENST00000477552 POLA1P09884 1462 aaPredicted RBP12.3□□□□□ -0.44
PTPRD-209ENST00000477552 LRRC9Q6ZRR7 1453 aa12.28□□□□□ -0.44
PTPRD-209ENST00000477552 THOC2Q8NI27 1593 aaKnown RBP12.28□□□□□ -0.44
PTPRD-209ENST00000477552 TIMELESSQ9UNS1 1208 aa12.27□□□□□ -0.45
PTPRD-209ENST00000477552 ACIN1Q9UKV3 1341 aaKnown RBP12.27□□□□□ -0.45
PTPRD-209ENST00000477552 CASKIN1Q8WXD9 1431 aa12.27□□□□□ -0.45
PTPRD-209ENST00000477552 DHX57Q6P158 1386 aaKnown RBP12.25□□□□□ -0.45
PTPRD-209ENST00000477552 ABCA5Q8WWZ7 1642 aa12.25□□□□□ -0.45
PTPRD-209ENST00000477552 RANGAP1P46060 587 aaPredicted RBP12.22□□□□□ -0.45
PTPRD-209ENST00000477552 KANK4Q5T7N3 995 aaPredicted RBP12.22□□□□□ -0.45
PTPRD-209ENST00000477552 PCF11O94913 1555 aaKnown RBP12.2□□□□□ -0.46
PTPRD-209ENST00000477552 SAMD9Q5K651 1589 aa12.2□□□□□ -0.46
PTPRD-209ENST00000477552 GAPVD1Q14C86 1478 aa12.2□□□□□ -0.46
PTPRD-209ENST00000477552 SETD5Q9C0A6 1442 aa12.2□□□□□ -0.46
PTPRD-209ENST00000477552 URB2Q14146 1524 aaKnown RBP12.18□□□□□ -0.46
PTPRD-209ENST00000477552 CCDC18Q5T9S5 1454 aa12.16□□□□□ -0.46
PTPRD-209ENST00000477552 RAD54L2Q9Y4B4 1467 aa12.16□□□□□ -0.46
PTPRD-209ENST00000477552 NESP48681 1621 aa12.13□□□□□ -0.47
PTPRD-209ENST00000477552 TARBP1Q13395 1621 aaKnown RBP12.13□□□□□ -0.47
PTPRD-209ENST00000477552 SUPT6HQ7KZ85 1726 aaKnown RBP12.13□□□□□ -0.47
PTPRD-209ENST00000477552 EHBP1L1Q8N3D4 1523 aa12.12□□□□□ -0.47
PTPRD-209ENST00000477552 RAB3GAP2Q9H2M9 1393 aa12.12□□□□□ -0.47
PTPRD-209ENST00000477552 SCAF1Q9H7N4 1312 aaKnown RBP12.11□□□□□ -0.47
PTPRD-209ENST00000477552 PBRM1Q86U86 1689 aa12.11□□□□□ -0.47
PTPRD-209ENST00000477552 SNAPC4Q5SXM2 1469 aa12.11□□□□□ -0.47
PTPRD-209ENST00000477552 FHOD3Q2V2M9 1422 aa12.1□□□□□ -0.47
PTPRD-209ENST00000477552 MTUS2Q5JR59 1369 aa12.09□□□□□ -0.47
PTPRD-209ENST00000477552 MRC2Q9UBG0 1479 aa12.08□□□□□ -0.47
PTPRD-209ENST00000477552 HECW1Q76N89 1606 aa12.08□□□□□ -0.48
PTPRD-209ENST00000477552 PHLDB1Q86UU1 1377 aa12.08□□□□□ -0.48
PTPRD-209ENST00000477552 FGD6Q6ZV73 1430 aa12.08□□□□□ -0.48
PTPRD-209ENST00000477552 GRIN2BQ13224 1484 aa12.08□□□□□ -0.48
PTPRD-209ENST00000477552 IQGAP2Q13576 1575 aa12.07□□□□□ -0.48
PTPRD-209ENST00000477552 IFT140Q96RY7 1462 aa12.06□□□□□ -0.48
PTPRD-209ENST00000477552 MYOM3Q5VTT5 1437 aa12.05□□□□□ -0.48
PTPRD-209ENST00000477552 AKNAQ7Z591 1439 aa12.05□□□□□ -0.48
PTPRD-209ENST00000477552 NEUROD1Q13562 356 aa12.05□□□□□ -0.48
PTPRD-209ENST00000477552 ADAMTS12P58397 1594 aa12.05□□□□□ -0.48
PTPRD-209ENST00000477552 MAPKBP1O60336 1514 aa12.04□□□□□ -0.48
PTPRD-209ENST00000477552 HFM1A2PYH4 1435 aa12.03□□□□□ -0.48
PTPRD-209ENST00000477552 PHF23Q9BUL5 403 aaPredicted RBP12.03□□□□□ -0.48
PTPRD-209ENST00000477552 MIA2Q96PC5 1412 aa12.03□□□□□ -0.48
PTPRD-209ENST00000477552 ARHGEF11O15085 1522 aa12.02□□□□□ -0.48
PTPRD-209ENST00000477552 UGGT2Q9NYU1 1516 aa12.02□□□□□ -0.48
PTPRD-209ENST00000477552 FAM50AQ14320 339 aaKnown RBP12.02□□□□□ -0.49
PTPRD-209ENST00000477552 TDRD9Q8NDG6 1382 aaKnown RBP12.02□□□□□ -0.49
PTPRD-209ENST00000477552 UACAQ9BZF9 1416 aa12.02□□□□□ -0.49
PTPRD-209ENST00000477552 MIER1Q8N108 512 aa12.01□□□□□ -0.49
PTPRD-209ENST00000477552 TCOF1Q13428 1488 aaKnown RBP12.01□□□□□ -0.49
PTPRD-209ENST00000477552 WDR62O43379 1518 aa12.01□□□□□ -0.49
PTPRD-209ENST00000477552 NCOA2Q15596 1464 aa12□□□□□ -0.49
PTPRD-209ENST00000477552 PTPN23Q9H3S7 1636 aa11.99□□□□□ -0.49
PTPRD-209ENST00000477552 GCC2Q8IWJ2 1684 aa11.98□□□□□ -0.49
PTPRD-209ENST00000477552 ATP1B4Q9UN42 357 aaPredicted RBP11.98□□□□□ -0.49
PTPRD-209ENST00000477552 GTF3C3Q9Y5Q9 886 aa11.98□□□□□ -0.49
PTPRD-209ENST00000477552 LRRIQ1Q96JM4 1722 aa11.97□□□□□ -0.49
PTPRD-209ENST00000477552 KIAA0586Q9BVV6 1533 aa11.97□□□□□ -0.49
PTPRD-209ENST00000477552 ITGAEP38570 1179 aa11.97□□□□□ -0.49
PTPRD-209ENST00000477552 P3H3Q8IVL6 736 aa11.96□□□□□ -0.49
PTPRD-209ENST00000477552 CDK11AQ9UQ88 783 aaPredicted RBP11.95□□□□□ -0.5
PTPRD-209ENST00000477552 EPRSP07814 1512 aaKnown RBP11.94□□□□□ -0.5
PTPRD-209ENST00000477552 MAGI1Q96QZ7 1491 aaPredicted RBP11.94□□□□□ -0.5
PTPRD-209ENST00000477552 NAIPQ13075 1403 aa11.92□□□□□ -0.5
PTPRD-209ENST00000477552 TONSLQ96HA7 1378 aa11.92□□□□□ -0.5
PTPRD-209ENST00000477552 PPP1R15AO75807 674 aaPredicted RBP11.91□□□□□ -0.5
PTPRD-209ENST00000477552 ROCK1Q13464 1354 aa11.91□□□□□ -0.5
PTPRD-209ENST00000477552 KIAA0556O60303 1618 aa11.89□□□□□ -0.51
PTPRD-209ENST00000477552 ITSN2Q9NZM3 1697 aa11.89□□□□□ -0.51
PTPRD-209ENST00000477552 RAPGEF6Q8TEU7 1601 aa11.88□□□□□ -0.51
PTPRD-209ENST00000477552 GRIN2AQ12879 1464 aa11.88□□□□□ -0.51
PTPRD-209ENST00000477552 CCER2I3L3R5 266 aa11.87□□□□□ -0.51
PTPRD-209ENST00000477552 CARMIL2Q6F5E8 1435 aa11.86□□□□□ -0.51
PTPRD-209ENST00000477552 MYT1Q01538 1121 aa11.86□□□□□ -0.51
PTPRD-209ENST00000477552 EIF4G3O43432 1585 aaKnown RBP11.85□□□□□ -0.51
PTPRD-209ENST00000477552 DNMT1P26358 1616 aaKnown RBP11.85□□□□□ -0.51
PTPRD-209ENST00000477552 SYNJ2O15056 1496 aa11.84□□□□□ -0.51
PTPRD-209ENST00000477552 YTHDC1Q96MU7 727 aaKnown RBP11.84□□□□□ -0.51
PTPRD-209ENST00000477552 ADCY10Q96PN6 1610 aa11.84□□□□□ -0.51
PTPRD-209ENST00000477552 MAGI3Q5TCQ9 1506 aa11.82□□□□□ -0.52
PTPRD-209ENST00000477552 DISP1Q96F81 1524 aa11.82□□□□□ -0.52
PTPRD-209ENST00000477552 PTPRKQ15262 1439 aa11.81□□□□□ -0.52
PTPRD-209ENST00000477552 ERCC6Q03468 1493 aa11.81□□□□□ -0.52
PTPRD-209ENST00000477552 ADGBQ8N7X0 1667 aa11.81□□□□□ -0.52
PTPRD-209ENST00000477552 TROQ12816 1431 aaPredicted RBP11.8□□□□□ -0.52
PTPRD-209ENST00000477552 ANP32CO43423 234 aa11.8□□□□□ -0.52
PTPRD-209ENST00000477552 SIN3AQ96ST3 1273 aa11.78□□□□□ -0.52
PTPRD-209ENST00000477552 DAPK1P53355 1430 aa11.77□□□□□ -0.52
PTPRD-209ENST00000477552 NUP160Q12769 1436 aa11.77□□□□□ -0.52
PTPRD-209ENST00000477552 NUP153P49790 1475 aaKnown RBP11.77□□□□□ -0.52
PTPRD-209ENST00000477552 CDK13Q14004 1512 aaKnown RBP11.76□□□□□ -0.53
PTPRD-209ENST00000477552 ZNF608Q9ULD9 1512 aaPredicted RBP11.76□□□□□ -0.53
PTPRD-209ENST00000477552 ADGRL2O95490 1459 aa11.76□□□□□ -0.53
PTPRD-209ENST00000477552 CHMP7Q8WUX9 453 aaPredicted RBP11.74□□□□□ -0.53
PTPRD-209ENST00000477552 SHANK2Q9UPX8 1470 aa11.74□□□□□ -0.53
PTPRD-209ENST00000477552 CROCC2H7BZ55 1655 aa11.74□□□□□ -0.53
PTPRD-209ENST00000477552 POLR1AO95602 1720 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms