RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 CUL7Q14999 1698 aa16.68■□□□□ 0.26
HLA-DMB-260ENST00000477537 AQRO60306 1485 aaKnown RBP eCLIP16.67■□□□□ 0.26
HLA-DMB-260ENST00000477537 KANK4Q5T7N3 995 aaPredicted RBP16.66■□□□□ 0.26
HLA-DMB-260ENST00000477537 EIF4G3O43432 1585 aaKnown RBP16.63■□□□□ 0.25
HLA-DMB-260ENST00000477537 ABCA5Q8WWZ7 1642 aa16.62■□□□□ 0.25
HLA-DMB-260ENST00000477537 GAPVD1Q14C86 1478 aa16.6■□□□□ 0.25
HLA-DMB-260ENST00000477537 CTTNBP2Q8WZ74 1663 aa16.59■□□□□ 0.25
HLA-DMB-260ENST00000477537 PBRM1Q86U86 1689 aa16.57■□□□□ 0.24
HLA-DMB-260ENST00000477537 TIAM1Q13009 1591 aa16.55■□□□□ 0.24
HLA-DMB-260ENST00000477537 MAP3K1Q13233 1512 aa16.55■□□□□ 0.24
HLA-DMB-260ENST00000477537 P3H3Q8IVL6 736 aa16.55■□□□□ 0.24
HLA-DMB-260ENST00000477537 EFCAB5A4FU69 1503 aa16.54■□□□□ 0.24
HLA-DMB-260ENST00000477537 FHAD1B1AJZ9 1412 aa16.54■□□□□ 0.24
HLA-DMB-260ENST00000477537 RRBP1Q9P2E9 1410 aaKnown RBP16.54■□□□□ 0.24
HLA-DMB-260ENST00000477537 PCF11O94913 1555 aaKnown RBP16.52■□□□□ 0.24
HLA-DMB-260ENST00000477537 FHOD3Q2V2M9 1422 aa16.52■□□□□ 0.23
HLA-DMB-260ENST00000477537 GRIN2BQ13224 1484 aa16.51■□□□□ 0.23
HLA-DMB-260ENST00000477537 SNAPC4Q5SXM2 1469 aa16.49■□□□□ 0.23
HLA-DMB-260ENST00000477537 CFAP43Q8NDM7 1665 aa16.49■□□□□ 0.23
HLA-DMB-260ENST00000477537 CCNB3Q8WWL7 1395 aa16.48■□□□□ 0.23
HLA-DMB-260ENST00000477537 LRRC9Q6ZRR7 1453 aa16.47■□□□□ 0.23
HLA-DMB-260ENST00000477537 ATP1B4Q9UN42 357 aaPredicted RBP16.45■□□□□ 0.22
HLA-DMB-260ENST00000477537 FYCO1Q9BQS8 1478 aa16.45■□□□□ 0.22
HLA-DMB-260ENST00000477537 CASKIN1Q8WXD9 1431 aa16.44■□□□□ 0.22
HLA-DMB-260ENST00000477537 ADAMTS12P58397 1594 aa16.43■□□□□ 0.22
HLA-DMB-260ENST00000477537 SAMD9Q5K651 1589 aa16.42■□□□□ 0.22
HLA-DMB-260ENST00000477537 FBLN2P98095 1184 aa16.42■□□□□ 0.22
HLA-DMB-260ENST00000477537 FMN1Q68DA7 1419 aa16.4■□□□□ 0.22
HLA-DMB-260ENST00000477537 MAGI1Q96QZ7 1491 aaPredicted RBP16.4■□□□□ 0.22
HLA-DMB-260ENST00000477537 PHLDB1Q86UU1 1377 aa16.38■□□□□ 0.21
HLA-DMB-260ENST00000477537 ITGAEP38570 1179 aa16.37■□□□□ 0.21
HLA-DMB-260ENST00000477537 CHMP7Q8WUX9 453 aaPredicted RBP16.37■□□□□ 0.21
HLA-DMB-260ENST00000477537 CHD1O14646 1710 aa16.37■□□□□ 0.21
HLA-DMB-260ENST00000477537 DHX57Q6P158 1386 aaKnown RBP16.36■□□□□ 0.21
HLA-DMB-260ENST00000477537 SYNJ2O15056 1496 aa16.36■□□□□ 0.21
HLA-DMB-260ENST00000477537 GRIN2AQ12879 1464 aa16.33■□□□□ 0.2
HLA-DMB-260ENST00000477537 CLSPNQ9HAW4 1339 aa16.32■□□□□ 0.2
HLA-DMB-260ENST00000477537 LRRIQ1Q96JM4 1722 aa16.31■□□□□ 0.2
HLA-DMB-260ENST00000477537 ZNF316A6NFI3 1004 aaPredicted RBP16.31■□□□□ 0.2
HLA-DMB-260ENST00000477537 IQGAP2Q13576 1575 aa16.31■□□□□ 0.2
HLA-DMB-260ENST00000477537 FAM50AQ14320 339 aaKnown RBP16.3■□□□□ 0.2
HLA-DMB-260ENST00000477537 DIEXFQ68CQ4 756 aaKnown RBP16.3■□□□□ 0.2
HLA-DMB-260ENST00000477537 CEP170Q5SW79 1584 aa16.27■□□□□ 0.2
HLA-DMB-260ENST00000477537 MTUS2Q5JR59 1369 aa16.26■□□□□ 0.19
HLA-DMB-260ENST00000477537 RAB3GAP2Q9H2M9 1393 aa16.26■□□□□ 0.19
HLA-DMB-260ENST00000477537 SETD5Q9C0A6 1442 aa16.24■□□□□ 0.19
HLA-DMB-260ENST00000477537 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.21■□□□□ 0.19
HLA-DMB-260ENST00000477537 UGGT2Q9NYU1 1516 aa16.21■□□□□ 0.19
HLA-DMB-260ENST00000477537 FGD6Q6ZV73 1430 aa16.21■□□□□ 0.19
HLA-DMB-260ENST00000477537 NUP160Q12769 1436 aa16.2■□□□□ 0.18
HLA-DMB-260ENST00000477537 HECW1Q76N89 1606 aa16.2■□□□□ 0.18
HLA-DMB-260ENST00000477537 EHBP1L1Q8N3D4 1523 aa16.2■□□□□ 0.18
HLA-DMB-260ENST00000477537 CCDC18Q5T9S5 1454 aa16.2■□□□□ 0.18
HLA-DMB-260ENST00000477537 SUPT6HQ7KZ85 1726 aaKnown RBP16.19■□□□□ 0.18
HLA-DMB-260ENST00000477537 NCOA2Q15596 1464 aa16.19■□□□□ 0.18
HLA-DMB-260ENST00000477537 KIAA0586Q9BVV6 1533 aa16.18■□□□□ 0.18
HLA-DMB-260ENST00000477537 MAGI3Q5TCQ9 1506 aa16.15■□□□□ 0.18
HLA-DMB-260ENST00000477537 SENP3Q9H4L4 574 aaPredicted RBP16.15■□□□□ 0.18
HLA-DMB-260ENST00000477537 MYOM3Q5VTT5 1437 aa16.14■□□□□ 0.17
HLA-DMB-260ENST00000477537 MAPKBP1O60336 1514 aa16.14■□□□□ 0.17
HLA-DMB-260ENST00000477537 EPRSP07814 1512 aaKnown RBP16.14■□□□□ 0.17
HLA-DMB-260ENST00000477537 KIAA0556O60303 1618 aa16.14■□□□□ 0.17
HLA-DMB-260ENST00000477537 OSCARQ8IYS5 282 aa16.13■□□□□ 0.17
HLA-DMB-260ENST00000477537 CLASP1Q7Z460 1538 aa16.12■□□□□ 0.17
HLA-DMB-260ENST00000477537 DISP1Q96F81 1524 aa16.12■□□□□ 0.17
HLA-DMB-260ENST00000477537 ARHGEF11O15085 1522 aa16.11■□□□□ 0.17
HLA-DMB-260ENST00000477537 CDK13Q14004 1512 aaKnown RBP16.11■□□□□ 0.17
HLA-DMB-260ENST00000477537 JPH4Q96JJ6 628 aa16.09■□□□□ 0.17
HLA-DMB-260ENST00000477537 PTPN23Q9H3S7 1636 aa16.09■□□□□ 0.17
HLA-DMB-260ENST00000477537 PTPRKQ15262 1439 aa16.08■□□□□ 0.16
HLA-DMB-260ENST00000477537 ARID3CA6NKF2 412 aa16.07■□□□□ 0.16
HLA-DMB-260ENST00000477537 ERCC6L2Q5T890 1561 aa16.06■□□□□ 0.16
HLA-DMB-260ENST00000477537 RAPGEF6Q8TEU7 1601 aa16.05■□□□□ 0.16
HLA-DMB-260ENST00000477537 SHROOM2Q13796 1616 aa16.04■□□□□ 0.16
HLA-DMB-260ENST00000477537 HFM1A2PYH4 1435 aa16.04■□□□□ 0.16
HLA-DMB-260ENST00000477537 TCOF1Q13428 1488 aaKnown RBP16.03■□□□□ 0.16
HLA-DMB-260ENST00000477537 PRG4Q92954 1404 aaPredicted RBP16.03■□□□□ 0.16
HLA-DMB-260ENST00000477537 NUP153P49790 1475 aaKnown RBP16.02■□□□□ 0.15
HLA-DMB-260ENST00000477537 SIN3AQ96ST3 1273 aa16■□□□□ 0.15
HLA-DMB-260ENST00000477537 NAIPQ13075 1403 aa15.99■□□□□ 0.15
HLA-DMB-260ENST00000477537 NEUROD1Q13562 356 aa15.99■□□□□ 0.15
HLA-DMB-260ENST00000477537 MIA2Q96PC5 1412 aa15.98■□□□□ 0.15
HLA-DMB-260ENST00000477537 MIER1Q8N108 512 aa15.98■□□□□ 0.15
HLA-DMB-260ENST00000477537 CARMIL2Q6F5E8 1435 aa15.97■□□□□ 0.15
HLA-DMB-260ENST00000477537 UACAQ9BZF9 1416 aa15.96■□□□□ 0.15
HLA-DMB-260ENST00000477537 CDK11AQ9UQ88 783 aaPredicted RBP15.94■□□□□ 0.14
HLA-DMB-260ENST00000477537 PLB1Q6P1J6 1458 aa15.94■□□□□ 0.14
HLA-DMB-260ENST00000477537 GCC2Q8IWJ2 1684 aa15.94■□□□□ 0.14
HLA-DMB-260ENST00000477537 CHIC2Q9UKJ5 165 aa15.94■□□□□ 0.14
HLA-DMB-260ENST00000477537 ACIN1Q9UKV3 1341 aaKnown RBP15.93■□□□□ 0.14
HLA-DMB-260ENST00000477537 CENPBP07199 599 aaPredicted RBP15.93■□□□□ 0.14
HLA-DMB-260ENST00000477537 RRP7BPQ9NSQ0 103 aa15.93■□□□□ 0.14
HLA-DMB-260ENST00000477537 TIMELESSQ9UNS1 1208 aa15.92■□□□□ 0.14
HLA-DMB-260ENST00000477537 SCAF1Q9H7N4 1312 aaKnown RBP15.91■□□□□ 0.14
HLA-DMB-260ENST00000477537 TROQ12816 1431 aaPredicted RBP15.9■□□□□ 0.14
HLA-DMB-260ENST00000477537 AKNAQ7Z591 1439 aa15.9■□□□□ 0.14
HLA-DMB-260ENST00000477537 RIMBP3CA6NJZ7 1639 aa15.88■□□□□ 0.13
HLA-DMB-260ENST00000477537 RIMBP3BA6NNM3 1639 aa15.88■□□□□ 0.13
HLA-DMB-260ENST00000477537 RIMBP3Q9UFD9 1639 aa15.88■□□□□ 0.13
HLA-DMB-260ENST00000477537 PTPRGP23470 1445 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms