RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 FAM9BQ8IZU0 186 aa15.33■□□□□ 0.04
COL27A1-204ENST00000477421 CHMP7Q8WUX9 453 aaPredicted RBP15.33■□□□□ 0.04
COL27A1-204ENST00000477421 SENP3-EIF4A1A0A087X0R7 540 aa15.33■□□□□ 0.04
COL27A1-204ENST00000477421 TDRD9Q8NDG6 1382 aaKnown RBP15.32■□□□□ 0.04
COL27A1-204ENST00000477421 NCBP3Q53F19 620 aaKnown RBP15.31■□□□□ 0.04
COL27A1-204ENST00000477421 MYT1Q01538 1121 aa15.29■□□□□ 0.04
COL27A1-204ENST00000477421 KDM2AQ9Y2K7 1162 aa15.28■□□□□ 0.04
COL27A1-204ENST00000477421 IRX6P78412 446 aaPredicted RBP15.28■□□□□ 0.04
COL27A1-204ENST00000477421 PRKCSHP14314 528 aaPredicted RBP15.27■□□□□ 0.04
COL27A1-204ENST00000477421 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.26■□□□□ 0.035e-10■□□□□ 9.4
COL27A1-204ENST00000477421 SALL2Q9Y467 1007 aaPredicted RBP15.25■□□□□ 0.03
COL27A1-204ENST00000477421 CADPSQ9ULU8 1353 aa15.24■□□□□ 0.03
COL27A1-204ENST00000477421 RAB3GAP2Q9H2M9 1393 aa15.23■□□□□ 0.03
COL27A1-204ENST00000477421 CLSPNQ9HAW4 1339 aa15.2■□□□□ 0.02
COL27A1-204ENST00000477421 FOXD1Q16676 465 aa15.2■□□□□ 0.02
COL27A1-204ENST00000477421 FHOD3Q2V2M9 1422 aa15.19■□□□□ 0.02
COL27A1-204ENST00000477421 FHAD1B1AJZ9 1412 aa15.18■□□□□ 0.02
COL27A1-204ENST00000477421 EIF4G2P78344 907 aaKnown RBP eCLIP15.18■□□□□ 0.02
COL27A1-204ENST00000477421 MRS2Q9HD23 443 aa15.18■□□□□ 0.02
COL27A1-204ENST00000477421 TSPY4P0CV99 314 aa15.18■□□□□ 0.02
COL27A1-204ENST00000477421 TSPY10P0CW01 314 aa15.18■□□□□ 0.02
COL27A1-204ENST00000477421 CFDP1Q9UEE9 299 aaPredicted RBP15.17■□□□□ 0.02
COL27A1-204ENST00000477421 KCNH8Q96L42 1107 aa15.16■□□□□ 0.02
COL27A1-204ENST00000477421 EIF4G1Q04637 1599 aaKnown RBP15.16■□□□□ 0.02
COL27A1-204ENST00000477421 SETD5Q9C0A6 1442 aa15.15■□□□□ 0.02
COL27A1-204ENST00000477421 SYNJ1O43426 1573 aa15.15■□□□□ 0.02
COL27A1-204ENST00000477421 DHX57Q6P158 1386 aaKnown RBP15.15■□□□□ 0.02
COL27A1-204ENST00000477421 RGL3Q3MIN7 710 aa15.14■□□□□ 0.01
COL27A1-204ENST00000477421 IGF1RP08069 1367 aa15.13■□□□□ 0.01
COL27A1-204ENST00000477421 PLEKHD1A6NEE1 506 aa15.11■□□□□ 0.01
COL27A1-204ENST00000477421 TMC1Q8TDI8 760 aa15.08■□□□□ 0
COL27A1-204ENST00000477421 SENP3Q9H4L4 574 aaPredicted RBP15.08■□□□□ 0
COL27A1-204ENST00000477421 CHGAP10645 457 aaKnown RBP15.07■□□□□ 0
COL27A1-204ENST00000477421 KIF21BO75037 1637 aa15.07■□□□□ 0
COL27A1-204ENST00000477421 SUPT16HQ9Y5B9 1047 aaKnown RBP15.07■□□□□ 0
COL27A1-204ENST00000477421 ARHGAP35Q9NRY4 1499 aa15.06■□□□□ 0
COL27A1-204ENST00000477421 RAD54L2Q9Y4B4 1467 aa15.06■□□□□ 0
COL27A1-204ENST00000477421 FANCD2Q9BXW9 1451 aa15.04■□□□□ -0
COL27A1-204ENST00000477421 NCAPD3P42695 1498 aa15.04■□□□□ -0
COL27A1-204ENST00000477421 ARAP1Q96P48 1450 aa15.04■□□□□ -0
COL27A1-204ENST00000477421 PPP1R15AO75807 674 aaPredicted RBP15.03■□□□□ -0
COL27A1-204ENST00000477421 FGD5Q6ZNL6 1462 aa15.03■□□□□ -0
COL27A1-204ENST00000477421 BICRAQ9NZM4 1560 aa15□□□□□ -0.01
COL27A1-204ENST00000477421 HSPA5P11021 654 aaKnown RBP15□□□□□ -0.01
COL27A1-204ENST00000477421 PDS5BQ9NTI5 1447 aa14.99□□□□□ -0.01
COL27A1-204ENST00000477421 ERCC6Q03468 1493 aa14.99□□□□□ -0.01
COL27A1-204ENST00000477421 FMN1Q68DA7 1419 aa14.98□□□□□ -0.01
COL27A1-204ENST00000477421 PHLDB1Q86UU1 1377 aa14.98□□□□□ -0.01
COL27A1-204ENST00000477421 DNAJC5BQ9UF47 199 aa14.97□□□□□ -0.01
COL27A1-204ENST00000477421 MPHOSPH9Q99550 1183 aa14.97□□□□□ -0.01
COL27A1-204ENST00000477421 CARD11Q9BXL7 1154 aa14.96□□□□□ -0.01
COL27A1-204ENST00000477421 AMER1Q5JTC6 1135 aaPredicted RBP14.96□□□□□ -0.01
COL27A1-204ENST00000477421 NPM2Q86SE8 214 aaKnown RBP14.95□□□□□ -0.02
COL27A1-204ENST00000477421 L3MBTL2Q969R5 705 aa14.94□□□□□ -0.02
COL27A1-204ENST00000477421 TIMELESSQ9UNS1 1208 aa14.94□□□□□ -0.02
COL27A1-204ENST00000477421 BCL11AQ9H165 835 aa14.93□□□□□ -0.02
COL27A1-204ENST00000477421 CFTRP13569 1480 aa14.93□□□□□ -0.02
COL27A1-204ENST00000477421 PRXQ9BXM0 1461 aa14.93□□□□□ -0.02
COL27A1-204ENST00000477421 NESP48681 1621 aa14.92□□□□□ -0.02
COL27A1-204ENST00000477421 PKD2Q13563 968 aa14.92□□□□□ -0.02
COL27A1-204ENST00000477421 CCDC136Q96JN2 1154 aa14.92□□□□□ -0.02
COL27A1-204ENST00000477421 CUX1P39880 1505 aa14.92□□□□□ -0.02
COL27A1-204ENST00000477421 DCAF11Q8TEB1 546 aa14.92□□□□□ -0.02
COL27A1-204ENST00000477421 KCNA4P22459 653 aa14.91□□□□□ -0.02
COL27A1-204ENST00000477421 RTL5Q5HYW3 569 aaPredicted RBP14.87□□□□□ -0.03
COL27A1-204ENST00000477421 ZNF644Q9H582 1327 aaPredicted RBP14.87□□□□□ -0.03
COL27A1-204ENST00000477421 NPM1P06748 294 aaKnown RBP eCLIP14.86□□□□□ -0.03
COL27A1-204ENST00000477421 CANXP27824 592 aaKnown RBP14.85□□□□□ -0.03
COL27A1-204ENST00000477421 TOP2BQ02880 1626 aa14.85□□□□□ -0.03
COL27A1-204ENST00000477421 B4GALNT3Q6L9W6 998 aa14.83□□□□□ -0.03
COL27A1-204ENST00000477421 HNRNPMP52272 730 aaKnown RBP eCLIP14.83□□□□□ -0.04
COL27A1-204ENST00000477421 JPH4Q96JJ6 628 aa14.83□□□□□ -0.04
COL27A1-204ENST00000477421 LRRC9Q6ZRR7 1453 aa14.83□□□□□ -0.04
COL27A1-204ENST00000477421 AQRO60306 1485 aaKnown RBP eCLIP14.82□□□□□ -0.04
COL27A1-204ENST00000477421 CCER2I3L3R5 266 aa14.82□□□□□ -0.04
COL27A1-204ENST00000477421 GAPVD1Q14C86 1478 aa14.82□□□□□ -0.04
COL27A1-204ENST00000477421 CC2D1BQ5T0F9 858 aaKnown RBP14.81□□□□□ -0.04
COL27A1-204ENST00000477421 NUP155O75694 1391 aa14.79□□□□□ -0.04
COL27A1-204ENST00000477421 ANP32AP39687 249 aaKnown RBP14.79□□□□□ -0.04
COL27A1-204ENST00000477421 ERICH3Q5RHP9 1530 aa14.79□□□□□ -0.04
COL27A1-204ENST00000477421 UNC13AQ9UPW8 1703 aa14.78□□□□□ -0.04
COL27A1-204ENST00000477421 WDR43Q15061 677 aaKnown RBP eCLIP14.78□□□□□ -0.041e-7■■□□□ 13.3
COL27A1-204ENST00000477421 RRBP1Q9P2E9 1410 aaKnown RBP14.77□□□□□ -0.04
COL27A1-204ENST00000477421 FGD6Q6ZV73 1430 aa14.77□□□□□ -0.05
COL27A1-204ENST00000477421 CCDC18Q5T9S5 1454 aa14.77□□□□□ -0.05
COL27A1-204ENST00000477421 NBR1Q14596 966 aa14.76□□□□□ -0.05
COL27A1-204ENST00000477421 STAG3Q9UJ98 1225 aa14.76□□□□□ -0.05
COL27A1-204ENST00000477421 POLA1P09884 1462 aaPredicted RBP14.73□□□□□ -0.05
COL27A1-204ENST00000477421 HMGXB3Q12766 1538 aa14.72□□□□□ -0.05
COL27A1-204ENST00000477421 TSHZ2Q9NRE2 1034 aa14.72□□□□□ -0.05
COL27A1-204ENST00000477421 TNNT2P45379 298 aaPredicted RBP14.71□□□□□ -0.05
COL27A1-204ENST00000477421 CARMIL2Q6F5E8 1435 aa14.71□□□□□ -0.05
COL27A1-204ENST00000477421 CC2D2AQ9P2K1 1620 aa14.7□□□□□ -0.06
COL27A1-204ENST00000477421 KNSTRNQ9Y448 316 aa14.7□□□□□ -0.06
COL27A1-204ENST00000477421 NEUROD2Q15784 382 aa14.7□□□□□ -0.06
COL27A1-204ENST00000477421 TOPBP1Q92547 1522 aa14.69□□□□□ -0.06
COL27A1-204ENST00000477421 PPP4R2Q9NY27 417 aa14.68□□□□□ -0.06
COL27A1-204ENST00000477421 MYOM3Q5VTT5 1437 aa14.68□□□□□ -0.06
COL27A1-204ENST00000477421 CASKIN1Q8WXD9 1431 aa14.68□□□□□ -0.06
COL27A1-204ENST00000477421 ARXQ96QS3 562 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms