RNA–Protein interactions for RNA: ENST00000474644.1

COL1A1-204, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-204ENST00000474644 RIMBP3Q9UFD9 1639 aa26.2■■□□□ 1.78
COL1A1-204ENST00000474644 KIAA0586Q9BVV6 1533 aa26.13■■□□□ 1.77
COL1A1-204ENST00000474644 ARHGEF11O15085 1522 aa26.12■■□□□ 1.77
COL1A1-204ENST00000474644 KIF21BO75037 1637 aa26.1■■□□□ 1.77
COL1A1-204ENST00000474644 SHROOM2Q13796 1616 aa26.1■■□□□ 1.77
COL1A1-204ENST00000474644 IQGAP2Q13576 1575 aa26.04■■□□□ 1.76
COL1A1-204ENST00000474644 CTTNBP2Q8WZ74 1663 aa26.03■■□□□ 1.76
COL1A1-204ENST00000474644 ERCC6L2Q5T890 1561 aa25.99■■□□□ 1.75
COL1A1-204ENST00000474644 JPH4Q96JJ6 628 aa25.98■■□□□ 1.75
COL1A1-204ENST00000474644 PRG4Q92954 1404 aaPredicted RBP25.97■■□□□ 1.75
COL1A1-204ENST00000474644 GOLGA3Q08378 1498 aa25.97■■□□□ 1.75
COL1A1-204ENST00000474644 ARAP1Q96P48 1450 aa25.93■■□□□ 1.74
COL1A1-204ENST00000474644 UGGT2Q9NYU1 1516 aa25.91■■□□□ 1.74
COL1A1-204ENST00000474644 EHMT2Q96KQ7 1210 aa25.87■■□□□ 1.73
COL1A1-204ENST00000474644 DISP1Q96F81 1524 aa25.84■■□□□ 1.73
COL1A1-204ENST00000474644 CARMIL2Q6F5E8 1435 aa25.82■■□□□ 1.72
COL1A1-204ENST00000474644 KIAA0556O60303 1618 aa25.81■■□□□ 1.72
COL1A1-204ENST00000474644 CYB5RLQ6IPT4 315 aa25.8■■□□□ 1.72
COL1A1-204ENST00000474644 UBTFP17480 764 aaKnown RBP25.79■■□□□ 1.72
COL1A1-204ENST00000474644 SAMD9Q5K651 1589 aa25.73■■□□□ 1.71
COL1A1-204ENST00000474644 TNIKQ9UKE5 1360 aa25.72■■□□□ 1.71
COL1A1-204ENST00000474644 PTPRGP23470 1445 aa25.67■■□□□ 1.7
COL1A1-204ENST00000474644 RANGAP1P46060 587 aaPredicted RBP25.66■■□□□ 1.7
COL1A1-204ENST00000474644 EFCAB5A4FU69 1503 aa25.66■■□□□ 1.7
COL1A1-204ENST00000474644 TTBK1Q5TCY1 1321 aaPredicted RBP25.63■■□□□ 1.69
COL1A1-204ENST00000474644 P3H3Q8IVL6 736 aa25.59■■□□□ 1.69
COL1A1-204ENST00000474644 FHOD3Q2V2M9 1422 aa25.58■■□□□ 1.69
COL1A1-204ENST00000474644 ARHGAP35Q9NRY4 1499 aa25.57■■□□□ 1.68
COL1A1-204ENST00000474644 ADCY10Q96PN6 1610 aa25.56■■□□□ 1.68
COL1A1-204ENST00000474644 LOC105371045A0A1W2PR82 267 aa25.55■■□□□ 1.68
COL1A1-204ENST00000474644 UACAQ9BZF9 1416 aa25.53■■□□□ 1.68
COL1A1-204ENST00000474644 TRHP20396 242 aaPredicted RBP25.51■■□□□ 1.67
COL1A1-204ENST00000474644 UHRF1BP1LA0JNW5 1464 aa25.51■■□□□ 1.67
COL1A1-204ENST00000474644 PLB1Q6P1J6 1458 aa25.51■■□□□ 1.67
COL1A1-204ENST00000474644 ABCC2Q92887 1545 aa25.51■■□□□ 1.67
COL1A1-204ENST00000474644 ABCA8O94911 1581 aa25.5■■□□□ 1.67
COL1A1-204ENST00000474644 CLIP1P30622 1438 aa25.49■■□□□ 1.67
COL1A1-204ENST00000474644 CEP162Q5TB80 1403 aa25.46■■□□□ 1.67
COL1A1-204ENST00000474644 RAPGEF6Q8TEU7 1601 aa25.41■■□□□ 1.66
COL1A1-204ENST00000474644 FMN1Q68DA7 1419 aa25.39■■□□□ 1.66
COL1A1-204ENST00000474644 KDM5BQ9UGL1 1544 aa25.38■■□□□ 1.65
COL1A1-204ENST00000474644 NPM1P06748 294 aaKnown RBP eCLIP25.35■■□□□ 1.65
COL1A1-204ENST00000474644 MAPKBP1O60336 1514 aa25.35■■□□□ 1.65
COL1A1-204ENST00000474644 ZCCHC11Q5TAX3 1644 aaKnown RBP25.34■■□□□ 1.65
COL1A1-204ENST00000474644 NUP153P49790 1475 aaKnown RBP25.33■■□□□ 1.65
COL1A1-204ENST00000474644 PCF11O94913 1555 aaKnown RBP25.27■■□□□ 1.64
COL1A1-204ENST00000474644 HECW1Q76N89 1606 aa25.27■■□□□ 1.64
COL1A1-204ENST00000474644 ATP10BO94823 1461 aa25.26■■□□□ 1.63
COL1A1-204ENST00000474644 ARID3CA6NKF2 412 aa25.25■■□□□ 1.63
COL1A1-204ENST00000474644 ASXL2Q76L83 1435 aa25.25■■□□□ 1.63
COL1A1-204ENST00000474644 CASKIN1Q8WXD9 1431 aa25.24■■□□□ 1.63
COL1A1-204ENST00000474644 FYCO1Q9BQS8 1478 aa25.21■■□□□ 1.63
COL1A1-204ENST00000474644 EPRSP07814 1512 aaKnown RBP25.18■■□□□ 1.62
COL1A1-204ENST00000474644 CDK13Q14004 1512 aaKnown RBP25.18■■□□□ 1.62
COL1A1-204ENST00000474644 ABCC10Q5T3U5 1492 aa25.18■■□□□ 1.62
COL1A1-204ENST00000474644 WDR7Q9Y4E6 1490 aa25.18■■□□□ 1.62
COL1A1-204ENST00000474644 DIP2BQ9P265 1576 aa25.18■■□□□ 1.62
COL1A1-204ENST00000474644 ATP1B4Q9UN42 357 aaPredicted RBP25.16■■□□□ 1.62
COL1A1-204ENST00000474644 LRRIQ1Q96JM4 1722 aa25.15■■□□□ 1.62
COL1A1-204ENST00000474644 VPS8Q8N3P4 1428 aa25.13■■□□□ 1.61
COL1A1-204ENST00000474644 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.12■■□□□ 1.61
COL1A1-204ENST00000474644 HNRNPUL2Q1KMD3 747 aaKnown RBP25.12■■□□□ 1.61
COL1A1-204ENST00000474644 KIF13AQ9H1H9 1805 aa25.12■■□□□ 1.61
COL1A1-204ENST00000474644 CCDC18Q5T9S5 1454 aa25.11■■□□□ 1.61
COL1A1-204ENST00000474644 GLI2P10070 1586 aa25.07■■□□□ 1.6
COL1A1-204ENST00000474644 FAM69CQ0P6D2 419 aa25.07■■□□□ 1.6
COL1A1-204ENST00000474644 PLEKHD1A6NEE1 506 aa25.01■■□□□ 1.59
COL1A1-204ENST00000474644 KCNH8Q96L42 1107 aa25■■□□□ 1.59
COL1A1-204ENST00000474644 CDK11AQ9UQ88 783 aaPredicted RBP24.98■■□□□ 1.59
COL1A1-204ENST00000474644 MAP3K4Q9Y6R4 1608 aa24.97■■□□□ 1.59
COL1A1-204ENST00000474644 MAGI3Q5TCQ9 1506 aa24.97■■□□□ 1.59
COL1A1-204ENST00000474644 TROQ12816 1431 aaPredicted RBP24.96■■□□□ 1.59
COL1A1-204ENST00000474644 CFAP43Q8NDM7 1665 aa24.96■■□□□ 1.59
COL1A1-204ENST00000474644 ABCA9Q8IUA7 1624 aa24.95■■□□□ 1.58
COL1A1-204ENST00000474644 TIAM1Q13009 1591 aa24.93■■□□□ 1.58
COL1A1-204ENST00000474644 KIF14Q15058 1648 aa24.91■■□□□ 1.58
COL1A1-204ENST00000474644 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.9■■□□□ 1.58
COL1A1-204ENST00000474644 TTC37Q6PGP7 1564 aa24.89■■□□□ 1.58
COL1A1-204ENST00000474644 PPRC1Q5VV67 1664 aaKnown RBP24.89■■□□□ 1.58
COL1A1-204ENST00000474644 CD109Q6YHK3 1445 aa24.88■■□□□ 1.57
COL1A1-204ENST00000474644 TSPOAP1O95153 1857 aa24.87■■□□□ 1.57
COL1A1-204ENST00000474644 MAP3K1Q13233 1512 aa24.86■■□□□ 1.57
COL1A1-204ENST00000474644 EHBP1L1Q8N3D4 1523 aa24.86■■□□□ 1.57
COL1A1-204ENST00000474644 MTUS2Q5JR59 1369 aa24.84■■□□□ 1.57
COL1A1-204ENST00000474644 TEX14Q8IWB6 1497 aa24.82■■□□□ 1.56
COL1A1-204ENST00000474644 LRRC9Q6ZRR7 1453 aa24.79■■□□□ 1.56
COL1A1-204ENST00000474644 APLP2Q06481 763 aa24.75■■□□□ 1.55
COL1A1-204ENST00000474644 MYO5CQ9NQX4 1742 aa24.75■■□□□ 1.55
COL1A1-204ENST00000474644 PLCH2O75038 1416 aa24.73■■□□□ 1.55
COL1A1-204ENST00000474644 KANK4Q5T7N3 995 aaPredicted RBP24.73■■□□□ 1.55
COL1A1-204ENST00000474644 ARAP3Q8WWN8 1544 aa24.72■■□□□ 1.55
COL1A1-204ENST00000474644 AEBP2Q6ZN18 517 aaPredicted RBP24.72■■□□□ 1.55
COL1A1-204ENST00000474644 SUPT6HQ7KZ85 1726 aaKnown RBP24.72■■□□□ 1.55
COL1A1-204ENST00000474644 PREX2Q70Z35 1606 aa24.71■■□□□ 1.55
COL1A1-204ENST00000474644 FANCAO15360 1455 aa24.7■■□□□ 1.54
COL1A1-204ENST00000474644 NCOA2Q15596 1464 aa24.7■■□□□ 1.54
COL1A1-204ENST00000474644 NEO1Q92859 1461 aa24.7■■□□□ 1.54
COL1A1-204ENST00000474644 CFAP74Q9C0B2 1584 aa24.68■■□□□ 1.54
COL1A1-204ENST00000474644 KDM6BO15054 1643 aa24.68■■□□□ 1.54
COL1A1-204ENST00000474644 CDC42BPAQ5VT25 1732 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms