RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 GRIN2AQ12879 1464 aa20.29■□□□□ 0.84
VPS13D-205ENST00000473099 IQGAP2Q13576 1575 aa20.25■□□□□ 0.83
VPS13D-205ENST00000473099 ARHGAP35Q9NRY4 1499 aa20.23■□□□□ 0.83
VPS13D-205ENST00000473099 CHD1O14646 1710 aa20.22■□□□□ 0.83
VPS13D-205ENST00000473099 VPS8Q8N3P4 1428 aa20.22■□□□□ 0.83
VPS13D-205ENST00000473099 SAMD9Q5K651 1589 aa20.21■□□□□ 0.83
VPS13D-205ENST00000473099 ARAP1Q96P48 1450 aa20.19■□□□□ 0.82
VPS13D-205ENST00000473099 KIAA0586Q9BVV6 1533 aa20.18■□□□□ 0.82
VPS13D-205ENST00000473099 OSCARQ8IYS5 282 aa20.18■□□□□ 0.82
VPS13D-205ENST00000473099 CHMP7Q8WUX9 453 aaPredicted RBP20.18■□□□□ 0.82
VPS13D-205ENST00000473099 CEP170Q5SW79 1584 aa20.16■□□□□ 0.82
VPS13D-205ENST00000473099 NUP160Q12769 1436 aa20.15■□□□□ 0.82
VPS13D-205ENST00000473099 UGGT2Q9NYU1 1516 aa20.14■□□□□ 0.81
VPS13D-205ENST00000473099 RANGAP1P46060 587 aaPredicted RBP20.13■□□□□ 0.81
VPS13D-205ENST00000473099 FBLN2P98095 1184 aa20.07■□□□□ 0.8
VPS13D-205ENST00000473099 FMN1Q68DA7 1419 aa20.04■□□□□ 0.8
VPS13D-205ENST00000473099 KIAA0556O60303 1618 aa20.03■□□□□ 0.8
VPS13D-205ENST00000473099 FHOD3Q2V2M9 1422 aa20.02■□□□□ 0.79
VPS13D-205ENST00000473099 APLP2Q06481 763 aa20.01■□□□□ 0.79
VPS13D-205ENST00000473099 PCF11O94913 1555 aaKnown RBP20■□□□□ 0.79
VPS13D-205ENST00000473099 FYCO1Q9BQS8 1478 aa19.99■□□□□ 0.79
VPS13D-205ENST00000473099 RIMBP3CA6NJZ7 1639 aa19.99■□□□□ 0.79
VPS13D-205ENST00000473099 RIMBP3BA6NNM3 1639 aa19.99■□□□□ 0.79
VPS13D-205ENST00000473099 RIMBP3Q9UFD9 1639 aa19.99■□□□□ 0.79
VPS13D-205ENST00000473099 MAP3K1Q13233 1512 aa19.99■□□□□ 0.79
VPS13D-205ENST00000473099 SHROOM2Q13796 1616 aa19.98■□□□□ 0.79
VPS13D-205ENST00000473099 CFAP43Q8NDM7 1665 aa19.97■□□□□ 0.79
VPS13D-205ENST00000473099 DISP1Q96F81 1524 aa19.97■□□□□ 0.79
VPS13D-205ENST00000473099 CARMIL2Q6F5E8 1435 aa19.95■□□□□ 0.78
VPS13D-205ENST00000473099 CASKIN1Q8WXD9 1431 aa19.95■□□□□ 0.78
VPS13D-205ENST00000473099 P3H3Q8IVL6 736 aa19.93■□□□□ 0.78
VPS13D-205ENST00000473099 ARHGEF11O15085 1522 aa19.92■□□□□ 0.78
VPS13D-205ENST00000473099 CLASP1Q7Z460 1538 aa19.92■□□□□ 0.78
VPS13D-205ENST00000473099 TIAM1Q13009 1591 aa19.92■□□□□ 0.78
VPS13D-205ENST00000473099 HECW1Q76N89 1606 aa19.91■□□□□ 0.78
VPS13D-205ENST00000473099 TRIM26Q12899 539 aaPredicted RBP19.9■□□□□ 0.78
VPS13D-205ENST00000473099 JPH4Q96JJ6 628 aa19.9■□□□□ 0.78
VPS13D-205ENST00000473099 LRRIQ1Q96JM4 1722 aa19.88■□□□□ 0.77
VPS13D-205ENST00000473099 RAPGEF6Q8TEU7 1601 aa19.85■□□□□ 0.77
VPS13D-205ENST00000473099 CCDC18Q5T9S5 1454 aa19.85■□□□□ 0.77
VPS13D-205ENST00000473099 PRG4Q92954 1404 aaPredicted RBP19.81■□□□□ 0.76
VPS13D-205ENST00000473099 LRRC9Q6ZRR7 1453 aa19.78■□□□□ 0.76
VPS13D-205ENST00000473099 PPARGC1BQ86YN6 1023 aaKnown RBP19.77■□□□□ 0.76
VPS13D-205ENST00000473099 ABCA8O94911 1581 aa19.74■□□□□ 0.75
VPS13D-205ENST00000473099 ATP1B4Q9UN42 357 aaPredicted RBP19.74■□□□□ 0.75
VPS13D-205ENST00000473099 EPRSP07814 1512 aaKnown RBP19.73■□□□□ 0.75
VPS13D-205ENST00000473099 PCGF6Q9BYE7 350 aa19.73■□□□□ 0.75
VPS13D-205ENST00000473099 EHBP1L1Q8N3D4 1523 aa19.72■□□□□ 0.75
VPS13D-205ENST00000473099 SUPT6HQ7KZ85 1726 aaKnown RBP19.71■□□□□ 0.75
VPS13D-205ENST00000473099 PTPRGP23470 1445 aa19.69■□□□□ 0.74
VPS13D-205ENST00000473099 NUP153P49790 1475 aaKnown RBP19.69■□□□□ 0.74
VPS13D-205ENST00000473099 KANK4Q5T7N3 995 aaPredicted RBP19.69■□□□□ 0.74
VPS13D-205ENST00000473099 CYB5RLQ6IPT4 315 aa19.69■□□□□ 0.74
VPS13D-205ENST00000473099 ERCC6L2Q5T890 1561 aa19.66■□□□□ 0.74
VPS13D-205ENST00000473099 TTBK1Q5TCY1 1321 aaPredicted RBP19.66■□□□□ 0.74
VPS13D-205ENST00000473099 MTUS2Q5JR59 1369 aa19.66■□□□□ 0.74
VPS13D-205ENST00000473099 PLB1Q6P1J6 1458 aa19.66■□□□□ 0.74
VPS13D-205ENST00000473099 CDK13Q14004 1512 aaKnown RBP19.64■□□□□ 0.73
VPS13D-205ENST00000473099 UACAQ9BZF9 1416 aa19.6■□□□□ 0.73
VPS13D-205ENST00000473099 CDK11AQ9UQ88 783 aaPredicted RBP19.6■□□□□ 0.73
VPS13D-205ENST00000473099 ABCC2Q92887 1545 aa19.6■□□□□ 0.73
VPS13D-205ENST00000473099 RRBP1Q9P2E9 1410 aaKnown RBP19.59■□□□□ 0.73
VPS13D-205ENST00000473099 ADCY10Q96PN6 1610 aa19.59■□□□□ 0.73
VPS13D-205ENST00000473099 AEBP2Q6ZN18 517 aaPredicted RBP19.59■□□□□ 0.73
VPS13D-205ENST00000473099 MAGI3Q5TCQ9 1506 aa19.58■□□□□ 0.73
VPS13D-205ENST00000473099 UHRF1BP1LA0JNW5 1464 aa19.57■□□□□ 0.72
VPS13D-205ENST00000473099 NCOA2Q15596 1464 aa19.54■□□□□ 0.72
VPS13D-205ENST00000473099 ATP10BO94823 1461 aa19.53■□□□□ 0.72
VPS13D-205ENST00000473099 TROQ12816 1431 aaPredicted RBP19.52■□□□□ 0.72
VPS13D-205ENST00000473099 ITSN2Q9NZM3 1697 aa19.52■□□□□ 0.71
VPS13D-205ENST00000473099 CCNB3Q8WWL7 1395 aa19.51■□□□□ 0.71
VPS13D-205ENST00000473099 PHLDB1Q86UU1 1377 aa19.5■□□□□ 0.71
VPS13D-205ENST00000473099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.49■□□□□ 0.71
VPS13D-205ENST00000473099 TRHP20396 242 aaPredicted RBP19.49■□□□□ 0.71
VPS13D-205ENST00000473099 HNRNPUL2Q1KMD3 747 aaKnown RBP19.49■□□□□ 0.71
VPS13D-205ENST00000473099 KIF14Q15058 1648 aa19.49■□□□□ 0.71
VPS13D-205ENST00000473099 ZCCHC11Q5TAX3 1644 aaKnown RBP19.49■□□□□ 0.71
VPS13D-205ENST00000473099 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.48■□□□□ 0.71
VPS13D-205ENST00000473099 MYOM3Q5VTT5 1437 aa19.48■□□□□ 0.71
VPS13D-205ENST00000473099 KDM5BQ9UGL1 1544 aa19.46■□□□□ 0.71
VPS13D-205ENST00000473099 FGD6Q6ZV73 1430 aa19.45■□□□□ 0.7
VPS13D-205ENST00000473099 PLEKHD1A6NEE1 506 aa19.44■□□□□ 0.7
VPS13D-205ENST00000473099 ARID3CA6NKF2 412 aa19.43■□□□□ 0.7
VPS13D-205ENST00000473099 PTPN23Q9H3S7 1636 aa19.43■□□□□ 0.7
VPS13D-205ENST00000473099 MIA2Q96PC5 1412 aa19.42■□□□□ 0.7
VPS13D-205ENST00000473099 CDC42BPAQ5VT25 1732 aa19.42■□□□□ 0.7
VPS13D-205ENST00000473099 TCOF1Q13428 1488 aaKnown RBP19.38■□□□□ 0.69
VPS13D-205ENST00000473099 MYO5CQ9NQX4 1742 aa19.36■□□□□ 0.69
VPS13D-205ENST00000473099 ABCC10Q5T3U5 1492 aa19.35■□□□□ 0.69
VPS13D-205ENST00000473099 PREX2Q70Z35 1606 aa19.33■□□□□ 0.69
VPS13D-205ENST00000473099 FAM50AQ14320 339 aaKnown RBP19.31■□□□□ 0.68
VPS13D-205ENST00000473099 CDC42BPBQ9Y5S2 1711 aa19.31■□□□□ 0.68
VPS13D-205ENST00000473099 GPATCH8Q9UKJ3 1502 aaKnown RBP19.3■□□□□ 0.68
VPS13D-205ENST00000473099 WDR7Q9Y4E6 1490 aa19.28■□□□□ 0.68
VPS13D-205ENST00000473099 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.27■□□□□ 0.68
VPS13D-205ENST00000473099 DNMT1P26358 1616 aaKnown RBP19.27■□□□□ 0.68
VPS13D-205ENST00000473099 TTC37Q6PGP7 1564 aa19.27■□□□□ 0.67
VPS13D-205ENST00000473099 NPM1P06748 294 aaKnown RBP eCLIP19.26■□□□□ 0.67
VPS13D-205ENST00000473099 CROCC2H7BZ55 1655 aa19.24■□□□□ 0.67
VPS13D-205ENST00000473099 CAMSAP2Q08AD1 1489 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms