RNA–Protein interactions for RNA: ENST00000472959.5

TOP3A-204, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 3

Gene TOP3A, Length 913 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-204ENST00000472959 JPH4Q96JJ6 628 aa34.44■■■■□ 3.1
TOP3A-204ENST00000472959 RIMBP3CA6NJZ7 1639 aa34.43■■■■□ 3.1
TOP3A-204ENST00000472959 RIMBP3BA6NNM3 1639 aa34.43■■■■□ 3.1
TOP3A-204ENST00000472959 RIMBP3Q9UFD9 1639 aa34.43■■■■□ 3.1
TOP3A-204ENST00000472959 SHROOM2Q13796 1616 aa34.37■■■■□ 3.09
TOP3A-204ENST00000472959 PRG4Q92954 1404 aaPredicted RBP34.31■■■■□ 3.08
TOP3A-204ENST00000472959 IQGAP2Q13576 1575 aa34.28■■■■□ 3.08
TOP3A-204ENST00000472959 KIF21BO75037 1637 aa34.25■■■■□ 3.07
TOP3A-204ENST00000472959 ARAP1Q96P48 1450 aa34.25■■■■□ 3.07
TOP3A-204ENST00000472959 CYB5RLQ6IPT4 315 aa34.24■■■■□ 3.07
TOP3A-204ENST00000472959 ERCC6L2Q5T890 1561 aa34.21■■■■□ 3.07
TOP3A-204ENST00000472959 CARMIL2Q6F5E8 1435 aa34.14■■■■□ 3.06
TOP3A-204ENST00000472959 CTTNBP2Q8WZ74 1663 aa34.14■■■■□ 3.06
TOP3A-204ENST00000472959 UGGT2Q9NYU1 1516 aa34.14■■■■□ 3.06
TOP3A-204ENST00000472959 GOLGA3Q08378 1498 aa34.12■■■■□ 3.05
TOP3A-204ENST00000472959 UBTFP17480 764 aaKnown RBP34.05■■■■□ 3.04
TOP3A-204ENST00000472959 DISP1Q96F81 1524 aa34.04■■■■□ 3.04
TOP3A-204ENST00000472959 EHMT2Q96KQ7 1210 aa34.01■■■■□ 3.03
TOP3A-204ENST00000472959 TNIKQ9UKE5 1360 aa34■■■■□ 3.03
TOP3A-204ENST00000472959 PTPRGP23470 1445 aa33.96■■■■□ 3.03
TOP3A-204ENST00000472959 KIAA0556O60303 1618 aa33.93■■■■□ 3.02
TOP3A-204ENST00000472959 TTBK1Q5TCY1 1321 aaPredicted RBP33.85■■■■□ 3.01
TOP3A-204ENST00000472959 RANGAP1P46060 587 aaPredicted RBP33.82■■■■□ 3
TOP3A-204ENST00000472959 SAMD9Q5K651 1589 aa33.79■■■■□ 3
TOP3A-204ENST00000472959 P3H3Q8IVL6 736 aa33.78■■■■□ 3
TOP3A-204ENST00000472959 EFCAB5A4FU69 1503 aa33.74■■■□□ 2.99
TOP3A-204ENST00000472959 UACAQ9BZF9 1416 aa33.73■■■□□ 2.99
TOP3A-204ENST00000472959 NPM1P06748 294 aaKnown RBP eCLIP33.7■■■□□ 2.99
TOP3A-204ENST00000472959 UHRF1BP1LA0JNW5 1464 aa33.69■■■□□ 2.98
TOP3A-204ENST00000472959 ADCY10Q96PN6 1610 aa33.67■■■□□ 2.98
TOP3A-204ENST00000472959 FHOD3Q2V2M9 1422 aa33.63■■■□□ 2.97
TOP3A-204ENST00000472959 ABCC2Q92887 1545 aa33.62■■■□□ 2.97
TOP3A-204ENST00000472959 PLB1Q6P1J6 1458 aa33.61■■■□□ 2.97
TOP3A-204ENST00000472959 LOC105371045A0A1W2PR82 267 aa33.6■■■□□ 2.97
TOP3A-204ENST00000472959 ARHGAP35Q9NRY4 1499 aa33.6■■■□□ 2.97
TOP3A-204ENST00000472959 ABCA8O94911 1581 aa33.56■■■□□ 2.96
TOP3A-204ENST00000472959 CLIP1P30622 1438 aa33.53■■■□□ 2.96
TOP3A-204ENST00000472959 KDM5BQ9UGL1 1544 aa33.5■■■□□ 2.95
TOP3A-204ENST00000472959 FMN1Q68DA7 1419 aa33.47■■■□□ 2.95
TOP3A-204ENST00000472959 MAPKBP1O60336 1514 aa33.47■■■□□ 2.95
TOP3A-204ENST00000472959 TRHP20396 242 aaPredicted RBP33.46■■■□□ 2.95
TOP3A-204ENST00000472959 CEP162Q5TB80 1403 aa33.41■■■□□ 2.94
TOP3A-204ENST00000472959 RAPGEF6Q8TEU7 1601 aa33.41■■■□□ 2.94
TOP3A-204ENST00000472959 ASXL2Q76L83 1435 aa33.36■■■□□ 2.93
TOP3A-204ENST00000472959 ZCCHC11Q5TAX3 1644 aaKnown RBP33.35■■■□□ 2.93
TOP3A-204ENST00000472959 NUP153P49790 1475 aaKnown RBP33.34■■■□□ 2.93
TOP3A-204ENST00000472959 ATP10BO94823 1461 aa33.33■■■□□ 2.93
TOP3A-204ENST00000472959 ARID3CA6NKF2 412 aa33.31■■■□□ 2.92
TOP3A-204ENST00000472959 ABCC10Q5T3U5 1492 aa33.3■■■□□ 2.92
TOP3A-204ENST00000472959 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.25■■■□□ 2.91
TOP3A-204ENST00000472959 FAM69CQ0P6D2 419 aa33.25■■■□□ 2.91
TOP3A-204ENST00000472959 HNRNPUL2Q1KMD3 747 aaKnown RBP33.25■■■□□ 2.91
TOP3A-204ENST00000472959 ATP1B4Q9UN42 357 aaPredicted RBP33.25■■■□□ 2.91
TOP3A-204ENST00000472959 CASKIN1Q8WXD9 1431 aa33.23■■■□□ 2.91
TOP3A-204ENST00000472959 WDR7Q9Y4E6 1490 aa33.23■■■□□ 2.91
TOP3A-204ENST00000472959 HECW1Q76N89 1606 aa33.2■■■□□ 2.9
TOP3A-204ENST00000472959 DIP2BQ9P265 1576 aa33.18■■■□□ 2.9
TOP3A-204ENST00000472959 EPRSP07814 1512 aaKnown RBP33.15■■■□□ 2.9
TOP3A-204ENST00000472959 PLEKHD1A6NEE1 506 aa33.14■■■□□ 2.9
TOP3A-204ENST00000472959 FYCO1Q9BQS8 1478 aa33.13■■■□□ 2.89
TOP3A-204ENST00000472959 KCNH8Q96L42 1107 aa33.11■■■□□ 2.89
TOP3A-204ENST00000472959 PCF11O94913 1555 aaKnown RBP33.11■■■□□ 2.89
TOP3A-204ENST00000472959 GLI2P10070 1586 aa33.11■■■□□ 2.89
TOP3A-204ENST00000472959 KIF13AQ9H1H9 1805 aa33.1■■■□□ 2.89
TOP3A-204ENST00000472959 CDK11AQ9UQ88 783 aaPredicted RBP33.09■■■□□ 2.89
TOP3A-204ENST00000472959 CDK13Q14004 1512 aaKnown RBP33.08■■■□□ 2.89
TOP3A-204ENST00000472959 CCDC18Q5T9S5 1454 aa33.05■■■□□ 2.88
TOP3A-204ENST00000472959 VPS8Q8N3P4 1428 aa33.01■■■□□ 2.87
TOP3A-204ENST00000472959 CD109Q6YHK3 1445 aa32.92■■■□□ 2.86
TOP3A-204ENST00000472959 LRRIQ1Q96JM4 1722 aa32.91■■■□□ 2.86
TOP3A-204ENST00000472959 TROQ12816 1431 aaPredicted RBP32.91■■■□□ 2.86
TOP3A-204ENST00000472959 MAP3K4Q9Y6R4 1608 aa32.91■■■□□ 2.86
TOP3A-204ENST00000472959 CFAP43Q8NDM7 1665 aa32.85■■■□□ 2.85
TOP3A-204ENST00000472959 ABCA9Q8IUA7 1624 aa32.85■■■□□ 2.85
TOP3A-204ENST00000472959 MAGI3Q5TCQ9 1506 aa32.83■■■□□ 2.85
TOP3A-204ENST00000472959 TEX14Q8IWB6 1497 aa32.83■■■□□ 2.85
TOP3A-204ENST00000472959 TSPOAP1O95153 1857 aa32.8■■■□□ 2.84
TOP3A-204ENST00000472959 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.78■■■□□ 2.84
TOP3A-204ENST00000472959 PPRC1Q5VV67 1664 aaKnown RBP32.76■■■□□ 2.84
TOP3A-204ENST00000472959 MTUS2Q5JR59 1369 aa32.75■■■□□ 2.83
TOP3A-204ENST00000472959 KIF14Q15058 1648 aa32.75■■■□□ 2.83
TOP3A-204ENST00000472959 MAP3K1Q13233 1512 aa32.72■■■□□ 2.83
TOP3A-204ENST00000472959 APLP2Q06481 763 aa32.7■■■□□ 2.83
TOP3A-204ENST00000472959 TTC37Q6PGP7 1564 aa32.7■■■□□ 2.82
TOP3A-204ENST00000472959 TIAM1Q13009 1591 aa32.69■■■□□ 2.82
TOP3A-204ENST00000472959 PHLDB1Q86UU1 1377 aa32.68■■■□□ 2.82
TOP3A-204ENST00000472959 PLCH2O75038 1416 aa32.67■■■□□ 2.82
TOP3A-204ENST00000472959 EHBP1L1Q8N3D4 1523 aa32.65■■■□□ 2.82
TOP3A-204ENST00000472959 NEO1Q92859 1461 aa32.63■■■□□ 2.81
TOP3A-204ENST00000472959 LRRC9Q6ZRR7 1453 aa32.6■■■□□ 2.81
TOP3A-204ENST00000472959 ARAP3Q8WWN8 1544 aa32.59■■■□□ 2.81
TOP3A-204ENST00000472959 FANCAO15360 1455 aa32.59■■■□□ 2.81
TOP3A-204ENST00000472959 KDM6BO15054 1643 aa32.59■■■□□ 2.81
TOP3A-204ENST00000472959 EFCAB2Q5VUJ9 269 aa32.58■■■□□ 2.81
TOP3A-204ENST00000472959 KANK4Q5T7N3 995 aaPredicted RBP32.56■■■□□ 2.8
TOP3A-204ENST00000472959 COL17A1Q9UMD9 1497 aaPredicted RBP32.54■■■□□ 2.8
TOP3A-204ENST00000472959 MYO5CQ9NQX4 1742 aa32.53■■■□□ 2.8
TOP3A-204ENST00000472959 CCNB3Q8WWL7 1395 aa32.53■■■□□ 2.8
TOP3A-204ENST00000472959 AKNAQ7Z591 1439 aa32.52■■■□□ 2.8
TOP3A-204ENST00000472959 CFAP74Q9C0B2 1584 aa32.51■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms