RNA–Protein interactions for RNA: ENST00000470953.1

VARS-222, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-222ENST00000470953 SHROOM2Q13796 1616 aa11.58□□□□□ -0.56
VARS-222ENST00000470953 PPRC1Q5VV67 1664 aaKnown RBP11.57□□□□□ -0.56
VARS-222ENST00000470953 NPM1P06748 294 aaKnown RBP eCLIP11.56□□□□□ -0.56
VARS-222ENST00000470953 PBRM1Q86U86 1689 aa11.54□□□□□ -0.56
VARS-222ENST00000470953 ADCY10Q96PN6 1610 aa11.53□□□□□ -0.56
VARS-222ENST00000470953 PCF11O94913 1555 aaKnown RBP11.51□□□□□ -0.57
VARS-222ENST00000470953 TOP2AP11388 1531 aaKnown RBP11.5□□□□□ -0.57
VARS-222ENST00000470953 GRIN2AQ12879 1464 aa11.49□□□□□ -0.57
VARS-222ENST00000470953 NUP160Q12769 1436 aa11.48□□□□□ -0.57
VARS-222ENST00000470953 PRG4Q92954 1404 aaPredicted RBP11.47□□□□□ -0.57
VARS-222ENST00000470953 FGD5Q6ZNL6 1462 aa11.46□□□□□ -0.57
VARS-222ENST00000470953 PTPRMP28827 1452 aa11.44□□□□□ -0.58
VARS-222ENST00000470953 KIF21BO75037 1637 aa11.42□□□□□ -0.58
VARS-222ENST00000470953 HSPA2P54652 639 aa11.41□□□□□ -0.58
VARS-222ENST00000470953 GLI2P10070 1586 aa11.39□□□□□ -0.59
VARS-222ENST00000470953 CCDC88BA6NC98 1476 aa11.38□□□□□ -0.59
VARS-222ENST00000470953 ABCA5Q8WWZ7 1642 aa11.36□□□□□ -0.59
VARS-222ENST00000470953 ADAMTS12P58397 1594 aa11.36□□□□□ -0.59
VARS-222ENST00000470953 ADAMTSL3P82987 1691 aa11.36□□□□□ -0.59
VARS-222ENST00000470953 JPH4Q96JJ6 628 aa11.33□□□□□ -0.6
VARS-222ENST00000470953 MAP3K4Q9Y6R4 1608 aa11.31□□□□□ -0.6
VARS-222ENST00000470953 TEX14Q8IWB6 1497 aa11.31□□□□□ -0.6
VARS-222ENST00000470953 ASXL2Q76L83 1435 aa11.3□□□□□ -0.6
VARS-222ENST00000470953 CUX1P39880 1505 aa11.29□□□□□ -0.6
VARS-222ENST00000470953 MADDQ8WXG6 1647 aa11.27□□□□□ -0.6
VARS-222ENST00000470953 PLB1Q6P1J6 1458 aa11.27□□□□□ -0.6
VARS-222ENST00000470953 MED1Q15648 1581 aaPredicted RBP11.27□□□□□ -0.61
VARS-222ENST00000470953 EPRSP07814 1512 aaKnown RBP11.24□□□□□ -0.61
VARS-222ENST00000470953 ABCA10Q8WWZ4 1543 aa11.24□□□□□ -0.61
VARS-222ENST00000470953 FHAD1B1AJZ9 1412 aa11.23□□□□□ -0.61
VARS-222ENST00000470953 RUSC2Q8N2Y8 1516 aa11.23□□□□□ -0.61
VARS-222ENST00000470953 CUL7Q14999 1698 aa11.22□□□□□ -0.61
VARS-222ENST00000470953 ABCC2Q92887 1545 aa11.22□□□□□ -0.61
VARS-222ENST00000470953 BCORL1Q5H9F3 1711 aa11.21□□□□□ -0.61
VARS-222ENST00000470953 RIMS1Q86UR5 1692 aaKnown RBP11.2□□□□□ -0.62
VARS-222ENST00000470953 KIAA0586Q9BVV6 1533 aa11.19□□□□□ -0.62
VARS-222ENST00000470953 PLPPR3Q6T4P5 718 aa11.18□□□□□ -0.62
VARS-222ENST00000470953 LTBP4Q8N2S1 1624 aa11.15□□□□□ -0.62
VARS-222ENST00000470953 STRCQ7RTU9 1775 aa11.15□□□□□ -0.62
VARS-222ENST00000470953 TTBK1Q5TCY1 1321 aaPredicted RBP11.14□□□□□ -0.63
VARS-222ENST00000470953 IQSEC2Q5JU85 1478 aa11.13□□□□□ -0.63
VARS-222ENST00000470953 PHF23Q9BUL5 403 aaPredicted RBP11.12□□□□□ -0.63
VARS-222ENST00000470953 PTPRGP23470 1445 aa11.11□□□□□ -0.63
VARS-222ENST00000470953 YEATS2Q9ULM3 1422 aa11.11□□□□□ -0.63
VARS-222ENST00000470953 DMRT2Q9Y5R5 561 aa11.09□□□□□ -0.63
VARS-222ENST00000470953 MAGI3Q5TCQ9 1506 aa11.09□□□□□ -0.63
VARS-222ENST00000470953 ARID4BQ4LE39 1312 aaPredicted RBP11.09□□□□□ -0.63
VARS-222ENST00000470953 UBAP1LF5GYI3 381 aa11.07□□□□□ -0.64
VARS-222ENST00000470953 ERICH3Q5RHP9 1530 aa11.06□□□□□ -0.64
VARS-222ENST00000470953 CFAP43Q8NDM7 1665 aa11.05□□□□□ -0.64
VARS-222ENST00000470953 HSPA1LP34931 641 aa11.05□□□□□ -0.64
VARS-222ENST00000470953 CD109Q6YHK3 1445 aa11.05□□□□□ -0.64
VARS-222ENST00000470953 UHRF1BP1LA0JNW5 1464 aa11.05□□□□□ -0.64
VARS-222ENST00000470953 ZCCHC11Q5TAX3 1644 aaKnown RBP11.04□□□□□ -0.64
VARS-222ENST00000470953 PREX1Q8TCU6 1659 aa11.03□□□□□ -0.64
VARS-222ENST00000470953 ARAP3Q8WWN8 1544 aa11.03□□□□□ -0.64
VARS-222ENST00000470953 KDM5BQ9UGL1 1544 aa11.03□□□□□ -0.64
VARS-222ENST00000470953 PTPRTO14522 1441 aa11.02□□□□□ -0.64
VARS-222ENST00000470953 SRCAPQ6ZRS2 3230 aa11.01□□□□□ -0.65
VARS-222ENST00000470953 WDR7Q9Y4E6 1490 aa11□□□□□ -0.65
VARS-222ENST00000470953 TNIKQ9UKE5 1360 aa11□□□□□ -0.65
VARS-222ENST00000470953 UACAQ9BZF9 1416 aa11□□□□□ -0.65
VARS-222ENST00000470953 RGS17Q9UGC6 210 aaPredicted RBP10.97□□□□□ -0.65
VARS-222ENST00000470953 RAPGEF3O95398 923 aa10.96□□□□□ -0.65
VARS-222ENST00000470953 TTC37Q6PGP7 1564 aa10.95□□□□□ -0.66
VARS-222ENST00000470953 FRMPD1Q5SYB0 1578 aa10.94□□□□□ -0.66
VARS-222ENST00000470953 WRNQ14191 1432 aaPredicted RBP eCLIP10.94□□□□□ -0.66
VARS-222ENST00000470953 SCAF1Q9H7N4 1312 aaKnown RBP10.94□□□□□ -0.66
VARS-222ENST00000470953 FER1L4A9Z1Z3 1794 aa10.93□□□□□ -0.66
VARS-222ENST00000470953 SIGLEC1Q9BZZ2 1709 aa10.93□□□□□ -0.66
VARS-222ENST00000470953 SETD1AO15047 1707 aaKnown RBP10.92□□□□□ -0.66
VARS-222ENST00000470953 KCNH8Q96L42 1107 aa10.92□□□□□ -0.66
VARS-222ENST00000470953 ARHGEF40Q8TER5 1519 aa10.92□□□□□ -0.66
VARS-222ENST00000470953 PIP4K2BP78356 416 aa10.91□□□□□ -0.66
VARS-222ENST00000470953 ZNF335Q9H4Z2 1342 aaPredicted RBP10.9□□□□□ -0.66
VARS-222ENST00000470953 CARMIL2Q6F5E8 1435 aa10.9□□□□□ -0.66
VARS-222ENST00000470953 CEBPAP49715 358 aaPredicted RBP10.89□□□□□ -0.67
VARS-222ENST00000470953 UHRF1BP1Q6BDS2 1440 aa10.89□□□□□ -0.67
VARS-222ENST00000470953 MLECQ14165 292 aa10.88□□□□□ -0.67
VARS-222ENST00000470953 FANCAO15360 1455 aa10.87□□□□□ -0.67
VARS-222ENST00000470953 POGZQ7Z3K3 1410 aa10.86□□□□□ -0.67
VARS-222ENST00000470953 POTEAQ6S8J7 498 aa10.85□□□□□ -0.67
VARS-222ENST00000470953 NCOA1Q15788 1441 aa10.84□□□□□ -0.67
VARS-222ENST00000470953 DISP1Q96F81 1524 aa10.82□□□□□ -0.68
VARS-222ENST00000470953 PHLDB1Q86UU1 1377 aa10.81□□□□□ -0.68
VARS-222ENST00000470953 SENP3Q9H4L4 574 aaPredicted RBP10.81□□□□□ -0.68
VARS-222ENST00000470953 ARHGEF12Q9NZN5 1544 aa10.79□□□□□ -0.68
VARS-222ENST00000470953 UPF1Q92900 1129 aaKnown RBP eCLIP10.79□□□□□ -0.68
VARS-222ENST00000470953 BIVM-ERCC5R4GMW8 1640 aa10.79□□□□□ -0.68
VARS-222ENST00000470953 AKNAQ7Z591 1439 aa10.78□□□□□ -0.68
VARS-222ENST00000470953 KIAA0556O60303 1618 aa10.78□□□□□ -0.68
VARS-222ENST00000470953 TOM1O60784 492 aa10.78□□□□□ -0.68
VARS-222ENST00000470953 NEO1Q92859 1461 aa10.77□□□□□ -0.69
VARS-222ENST00000470953 RICTORQ6R327 1708 aa10.77□□□□□ -0.69
VARS-222ENST00000470953 SETD1BQ9UPS6 1966 aaKnown RBP10.76□□□□□ -0.69
VARS-222ENST00000470953 ALKQ9UM73 1620 aa10.76□□□□□ -0.69
VARS-222ENST00000470953 IQGAP2Q13576 1575 aa10.75□□□□□ -0.69
VARS-222ENST00000470953 CAMSAP1Q5T5Y3 1602 aa10.74□□□□□ -0.69
VARS-222ENST00000470953 ABCA9Q8IUA7 1624 aa10.74□□□□□ -0.69
VARS-222ENST00000470953 IFFO2Q5TF58 517 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms