RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CHMP7Q8WUX9 453 aaPredicted RBP10.07□□□□□ -0.8
PTPN4-209ENST00000469511 GAPVD1Q14C86 1478 aa10.06□□□□□ -0.8
PTPN4-209ENST00000469511 FGD5Q6ZNL6 1462 aa10.05□□□□□ -0.8
PTPN4-209ENST00000469511 KIF13AQ9H1H9 1805 aa10.03□□□□□ -0.8
PTPN4-209ENST00000469511 PBRM1Q86U86 1689 aa10.02□□□□□ -0.8
PTPN4-209ENST00000469511 WDR97A6NE52 1622 aa10.02□□□□□ -0.81
PTPN4-209ENST00000469511 MAGI1Q96QZ7 1491 aaPredicted RBP10.02□□□□□ -0.81
PTPN4-209ENST00000469511 CUX1P39880 1505 aa10.02□□□□□ -0.81
PTPN4-209ENST00000469511 SYNJ2O15056 1496 aa10.01□□□□□ -0.81
PTPN4-209ENST00000469511 GRIN2BQ13224 1484 aa10□□□□□ -0.81
PTPN4-209ENST00000469511 DCAF8L1A6NGE4 600 aa9.96□□□□□ -0.82
PTPN4-209ENST00000469511 ILDR1Q86SU0 546 aaPredicted RBP9.96□□□□□ -0.82
PTPN4-209ENST00000469511 CEP170Q5SW79 1584 aa9.95□□□□□ -0.82
PTPN4-209ENST00000469511 ABCA5Q8WWZ7 1642 aa9.93□□□□□ -0.82
PTPN4-209ENST00000469511 MYCNP04198 464 aaPredicted RBP9.93□□□□□ -0.82
PTPN4-209ENST00000469511 KDM4FA0A1W2PPD8 638 aa9.92□□□□□ -0.82
PTPN4-209ENST00000469511 GRIN2AQ12879 1464 aa9.9□□□□□ -0.83
PTPN4-209ENST00000469511 SHROOM2Q13796 1616 aa9.89□□□□□ -0.83
PTPN4-209ENST00000469511 ABCA10Q8WWZ4 1543 aa9.88□□□□□ -0.83
PTPN4-209ENST00000469511 NUP160Q12769 1436 aa9.88□□□□□ -0.83
PTPN4-209ENST00000469511 TSPOAP1O95153 1857 aa9.87□□□□□ -0.83
PTPN4-209ENST00000469511 ATXN8OSP0DMR3 200 aa9.87□□□□□ -0.83
PTPN4-209ENST00000469511 ADAMTS12P58397 1594 aa9.87□□□□□ -0.83
PTPN4-209ENST00000469511 FAM69CQ0P6D2 419 aa9.86□□□□□ -0.83
PTPN4-209ENST00000469511 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.86□□□□□ -0.83
PTPN4-209ENST00000469511 PRG4Q92954 1404 aaPredicted RBP9.82□□□□□ -0.84
PTPN4-209ENST00000469511 ABCC10Q5T3U5 1492 aa9.82□□□□□ -0.84
PTPN4-209ENST00000469511 DIP2BQ9P265 1576 aa9.82□□□□□ -0.84
PTPN4-209ENST00000469511 KDM6BO15054 1643 aa9.81□□□□□ -0.84
PTPN4-209ENST00000469511 ADCY10Q96PN6 1610 aa9.79□□□□□ -0.84
PTPN4-209ENST00000469511 JPH4Q96JJ6 628 aa9.79□□□□□ -0.84
PTPN4-209ENST00000469511 FHAD1B1AJZ9 1412 aa9.78□□□□□ -0.84
PTPN4-209ENST00000469511 MAPKBP1O60336 1514 aa9.77□□□□□ -0.85
PTPN4-209ENST00000469511 U3KPZ7 1027 aaPredicted RBP9.75□□□□□ -0.85
PTPN4-209ENST00000469511 BIVM-ERCC5R4GMW8 1640 aa9.74□□□□□ -0.85
PTPN4-209ENST00000469511 WRNQ14191 1432 aaPredicted RBP eCLIP9.74□□□□□ -0.85
PTPN4-209ENST00000469511 RUSC2Q8N2Y8 1516 aa9.74□□□□□ -0.85
PTPN4-209ENST00000469511 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.74□□□□□ -0.85
PTPN4-209ENST00000469511 HNRNPUL2Q1KMD3 747 aaKnown RBP9.74□□□□□ -0.85
PTPN4-209ENST00000469511 PPRC1Q5VV67 1664 aaKnown RBP9.74□□□□□ -0.85
PTPN4-209ENST00000469511 NPM1P06748 294 aaKnown RBP eCLIP9.73□□□□□ -0.85
PTPN4-209ENST00000469511 ERICH3Q5RHP9 1530 aa9.72□□□□□ -0.85
PTPN4-209ENST00000469511 TOP2BQ02880 1626 aa9.72□□□□□ -0.85
PTPN4-209ENST00000469511 ADGRL1O94910 1474 aa9.72□□□□□ -0.85
PTPN4-209ENST00000469511 SAMD1Q6SPF0 538 aaPredicted RBP9.71□□□□□ -0.86
PTPN4-209ENST00000469511 COL17A1Q9UMD9 1497 aaPredicted RBP9.7□□□□□ -0.86
PTPN4-209ENST00000469511 HECW2Q9P2P5 1572 aa9.7□□□□□ -0.86
PTPN4-209ENST00000469511 TTBK1Q5TCY1 1321 aaPredicted RBP9.69□□□□□ -0.86
PTPN4-209ENST00000469511 CUL7Q14999 1698 aa9.64□□□□□ -0.87
PTPN4-209ENST00000469511 SUPT5HO00267 1087 aaKnown RBP9.63□□□□□ -0.87
PTPN4-209ENST00000469511 ATF5Q9Y2D1 282 aaPredicted RBP9.63□□□□□ -0.87
PTPN4-209ENST00000469511 POTEDQ86YR6 584 aa9.62□□□□□ -0.87
PTPN4-209ENST00000469511 ASXL2Q76L83 1435 aa9.62□□□□□ -0.87
PTPN4-209ENST00000469511 KIAA0586Q9BVV6 1533 aa9.61□□□□□ -0.87
PTPN4-209ENST00000469511 GLI2P10070 1586 aa9.61□□□□□ -0.87
PTPN4-209ENST00000469511 PTPRGP23470 1445 aa9.6□□□□□ -0.87
PTPN4-209ENST00000469511 ABCC2Q92887 1545 aa9.6□□□□□ -0.87
PTPN4-209ENST00000469511 IGF1RP08069 1367 aa9.59□□□□□ -0.87
PTPN4-209ENST00000469511 MAP3K4Q9Y6R4 1608 aa9.58□□□□□ -0.88
PTPN4-209ENST00000469511 APLP2Q06481 763 aa9.58□□□□□ -0.88
PTPN4-209ENST00000469511 EPRSP07814 1512 aaKnown RBP9.56□□□□□ -0.88
PTPN4-209ENST00000469511 PLB1Q6P1J6 1458 aa9.55□□□□□ -0.88
PTPN4-209ENST00000469511 FBXO41Q8TF61 875 aa9.55□□□□□ -0.88
PTPN4-209ENST00000469511 TNIKQ9UKE5 1360 aa9.54□□□□□ -0.88
PTPN4-209ENST00000469511 ZCCHC11Q5TAX3 1644 aaKnown RBP9.53□□□□□ -0.88
PTPN4-209ENST00000469511 RNF39Q9H2S5 420 aa9.53□□□□□ -0.88
PTPN4-209ENST00000469511 KIF21BO75037 1637 aa9.53□□□□□ -0.88
PTPN4-209ENST00000469511 UACAQ9BZF9 1416 aa9.52□□□□□ -0.89
PTPN4-209ENST00000469511 UHRF1BP1LA0JNW5 1464 aa9.52□□□□□ -0.89
PTPN4-209ENST00000469511 DISP1Q96F81 1524 aa9.51□□□□□ -0.89
PTPN4-209ENST00000469511 KDM5BQ9UGL1 1544 aa9.51□□□□□ -0.89
PTPN4-209ENST00000469511 IQGAP2Q13576 1575 aa9.49□□□□□ -0.89
PTPN4-209ENST00000469511 CARMIL1Q5VZK9 1371 aa9.49□□□□□ -0.89
PTPN4-209ENST00000469511 CARMIL2Q6F5E8 1435 aa9.48□□□□□ -0.89
PTPN4-209ENST00000469511 TEX14Q8IWB6 1497 aa9.48□□□□□ -0.89
PTPN4-209ENST00000469511 KIF27Q86VH2 1401 aa9.48□□□□□ -0.89
PTPN4-209ENST00000469511 ZNF219Q9P2Y4 722 aaPredicted RBP9.46□□□□□ -0.9
PTPN4-209ENST00000469511 KCNH8Q96L42 1107 aa9.45□□□□□ -0.9
PTPN4-209ENST00000469511 C1QBPQ07021 282 aaKnown RBP9.44□□□□□ -0.9
PTPN4-209ENST00000469511 ADAMTSL3P82987 1691 aa9.44□□□□□ -0.9
PTPN4-209ENST00000469511 CFAP43Q8NDM7 1665 aa9.43□□□□□ -0.9
PTPN4-209ENST00000469511 KIAA0556O60303 1618 aa9.43□□□□□ -0.9
PTPN4-209ENST00000469511 WDR7Q9Y4E6 1490 aa9.43□□□□□ -0.9
PTPN4-209ENST00000469511 CD109Q6YHK3 1445 aa9.43□□□□□ -0.9
PTPN4-209ENST00000469511 MAGI3Q5TCQ9 1506 aa9.42□□□□□ -0.9
PTPN4-209ENST00000469511 PTPRMP28827 1452 aa9.42□□□□□ -0.9
PTPN4-209ENST00000469511 ILDR2Q71H61 639 aa9.42□□□□□ -0.9
PTPN4-209ENST00000469511 UGGT2Q9NYU1 1516 aa9.41□□□□□ -0.9
PTPN4-209ENST00000469511 LMTK3Q96Q04 1460 aa9.4□□□□□ -0.91
PTPN4-209ENST00000469511 MADDQ8WXG6 1647 aa9.39□□□□□ -0.91
PTPN4-209ENST00000469511 ARID3CA6NKF2 412 aa9.39□□□□□ -0.91
PTPN4-209ENST00000469511 RAPGEF3O95398 923 aa9.38□□□□□ -0.91
PTPN4-209ENST00000469511 HSPA2P54652 639 aa9.38□□□□□ -0.91
PTPN4-209ENST00000469511 SPINK5Q9NQ38 1064 aaPredicted RBP9.38□□□□□ -0.91
PTPN4-209ENST00000469511 BCORL1Q5H9F3 1711 aa9.38□□□□□ -0.91
PTPN4-209ENST00000469511 ABCA8O94911 1581 aa9.37□□□□□ -0.91
PTPN4-209ENST00000469511 FKBP8Q14318 412 aa9.37□□□□□ -0.91
PTPN4-209ENST00000469511 PCF11O94913 1555 aaKnown RBP9.37□□□□□ -0.91
PTPN4-209ENST00000469511 ARAP3Q8WWN8 1544 aa9.36□□□□□ -0.91
PTPN4-209ENST00000469511 RIMS1Q86UR5 1692 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms