RNA–Protein interactions for RNA: ENST00000467558.5

BRAT1-203, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 5

Gene BRAT1, Length 4,440 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-203ENST00000467558 BCANQ96GW7 911 aa18.94■□□□□ 0.62
BRAT1-203ENST00000467558 CCNB3Q8WWL7 1395 aa18.93■□□□□ 0.62
BRAT1-203ENST00000467558 TDRD9Q8NDG6 1382 aaKnown RBP18.91■□□□□ 0.62
BRAT1-203ENST00000467558 CLSPNQ9HAW4 1339 aa18.9■□□□□ 0.62
BRAT1-203ENST00000467558 MYT1Q01538 1121 aa18.9■□□□□ 0.62
BRAT1-203ENST00000467558 STAG3Q9UJ98 1225 aa18.88■□□□□ 0.61
BRAT1-203ENST00000467558 EIF4G1Q04637 1599 aaKnown RBP18.87■□□□□ 0.61
BRAT1-203ENST00000467558 KDM2AQ9Y2K7 1162 aa18.86■□□□□ 0.61
BRAT1-203ENST00000467558 EIF4G2P78344 907 aaKnown RBP eCLIP18.85■□□□□ 0.61
BRAT1-203ENST00000467558 NEFMP07197 916 aa18.82■□□□□ 0.6
BRAT1-203ENST00000467558 RUSC2Q8N2Y8 1516 aa18.8■□□□□ 0.6
BRAT1-203ENST00000467558 KANK4Q5T7N3 995 aaPredicted RBP18.8■□□□□ 0.6
BRAT1-203ENST00000467558 HNRNPUQ00839 825 aaKnown RBP eCLIP18.8■□□□□ 0.6
BRAT1-203ENST00000467558 RAPGEF2Q9Y4G8 1499 aa18.8■□□□□ 0.6
BRAT1-203ENST00000467558 MIER1Q8N108 512 aa18.79■□□□□ 0.6
BRAT1-203ENST00000467558 HIRIP3Q9BW71 556 aaPredicted RBP18.79■□□□□ 0.6
BRAT1-203ENST00000467558 FMN1Q68DA7 1419 aa18.79■□□□□ 0.6
BRAT1-203ENST00000467558 NCAPD3P42695 1498 aa18.77■□□□□ 0.6
BRAT1-203ENST00000467558 FAM9BQ8IZU0 186 aa18.76■□□□□ 0.59
BRAT1-203ENST00000467558 FANCD2Q9BXW9 1451 aa18.75■□□□□ 0.59
BRAT1-203ENST00000467558 TMC1Q8TDI8 760 aa18.74■□□□□ 0.59
BRAT1-203ENST00000467558 CARMIL2Q6F5E8 1435 aa18.73■□□□□ 0.59
BRAT1-203ENST00000467558 ARHGAP35Q9NRY4 1499 aa18.73■□□□□ 0.59
BRAT1-203ENST00000467558 CANXP27824 592 aaKnown RBP18.72■□□□□ 0.59
BRAT1-203ENST00000467558 SIN3AQ96ST3 1273 aa18.71■□□□□ 0.59
BRAT1-203ENST00000467558 MRS2Q9HD23 443 aa18.7■□□□□ 0.58
BRAT1-203ENST00000467558 TIMELESSQ9UNS1 1208 aa18.69■□□□□ 0.58
BRAT1-203ENST00000467558 RGL3Q3MIN7 710 aa18.68■□□□□ 0.58
BRAT1-203ENST00000467558 SETD5Q9C0A6 1442 aa18.68■□□□□ 0.58
BRAT1-203ENST00000467558 FKBP8Q14318 412 aa18.65■□□□□ 0.58
BRAT1-203ENST00000467558 ZBTB47Q9UFB7 747 aaPredicted RBP18.62■□□□□ 0.57
BRAT1-203ENST00000467558 FHOD3Q2V2M9 1422 aa18.62■□□□□ 0.57
BRAT1-203ENST00000467558 PLPPR3Q6T4P5 718 aa18.59■□□□□ 0.57
BRAT1-203ENST00000467558 RTL5Q5HYW3 569 aaPredicted RBP18.58■□□□□ 0.57
BRAT1-203ENST00000467558 CARD11Q9BXL7 1154 aa18.58■□□□□ 0.56
BRAT1-203ENST00000467558 IGF1RP08069 1367 aa18.57■□□□□ 0.56
BRAT1-203ENST00000467558 FGD5Q6ZNL6 1462 aa18.57■□□□□ 0.56
BRAT1-203ENST00000467558 WDR43Q15061 677 aaKnown RBP eCLIP18.56■□□□□ 0.56
BRAT1-203ENST00000467558 SALL2Q9Y467 1007 aaPredicted RBP18.56■□□□□ 0.56
BRAT1-203ENST00000467558 SLC24A1O60721 1099 aa18.55■□□□□ 0.56
BRAT1-203ENST00000467558 RAB3GAP2Q9H2M9 1393 aa18.55■□□□□ 0.56
BRAT1-203ENST00000467558 JPH4Q96JJ6 628 aa18.54■□□□□ 0.56
BRAT1-203ENST00000467558 CDCA8Q53HL2 280 aa18.53■□□□□ 0.56
BRAT1-203ENST00000467558 BICRAQ9NZM4 1560 aa18.51■□□□□ 0.55
BRAT1-203ENST00000467558 CFTRP13569 1480 aa18.5■□□□□ 0.55
BRAT1-203ENST00000467558 PPP1R15AO75807 674 aaPredicted RBP18.48■□□□□ 0.55
BRAT1-203ENST00000467558 GAPVD1Q14C86 1478 aa18.47■□□□□ 0.55
BRAT1-203ENST00000467558 EFCAB2Q5VUJ9 269 aa18.46■□□□□ 0.55
BRAT1-203ENST00000467558 CCDC18Q5T9S5 1454 aa18.46■□□□□ 0.55
BRAT1-203ENST00000467558 RAD54L2Q9Y4B4 1467 aa18.45■□□□□ 0.54
BRAT1-203ENST00000467558 PKD2Q13563 968 aa18.44■□□□□ 0.54
BRAT1-203ENST00000467558 DCAF11Q8TEB1 546 aa18.44■□□□□ 0.54
BRAT1-203ENST00000467558 KANK1Q14678 1352 aa18.44■□□□□ 0.54
BRAT1-203ENST00000467558 ANKRD30AQ9BXX3 1397 aa18.43■□□□□ 0.54
BRAT1-203ENST00000467558 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.43■□□□□ 0.54
BRAT1-203ENST00000467558 MPHOSPH9Q99550 1183 aa18.43■□□□□ 0.54
BRAT1-203ENST00000467558 HMGXB3Q12766 1538 aa18.43■□□□□ 0.54
BRAT1-203ENST00000467558 KNSTRNQ9Y448 316 aa18.42■□□□□ 0.54
BRAT1-203ENST00000467558 ARID4BQ4LE39 1312 aaPredicted RBP18.4■□□□□ 0.54
BRAT1-203ENST00000467558 ANP32AP39687 249 aaKnown RBP18.4■□□□□ 0.54
BRAT1-203ENST00000467558 RSPH4AQ5TD94 716 aa18.4■□□□□ 0.54
BRAT1-203ENST00000467558 CCDC136Q96JN2 1154 aa18.4■□□□□ 0.54
BRAT1-203ENST00000467558 SYNJ1O43426 1573 aa18.39■□□□□ 0.54
BRAT1-203ENST00000467558 SCAF1Q9H7N4 1312 aaKnown RBP18.39■□□□□ 0.54
BRAT1-203ENST00000467558 SENP3Q9H4L4 574 aaPredicted RBP18.37■□□□□ 0.53
BRAT1-203ENST00000467558 BCL11AQ9H165 835 aa18.37■□□□□ 0.53
BRAT1-203ENST00000467558 NUP155O75694 1391 aa18.37■□□□□ 0.53
BRAT1-203ENST00000467558 FOXD1Q16676 465 aa18.37■□□□□ 0.53
BRAT1-203ENST00000467558 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.52
BRAT1-203ENST00000467558 KIF21BO75037 1637 aa18.32■□□□□ 0.52
BRAT1-203ENST00000467558 HSPA5P11021 654 aaKnown RBP18.32■□□□□ 0.52
BRAT1-203ENST00000467558 PTPRGP23470 1445 aa18.31■□□□□ 0.52
BRAT1-203ENST00000467558 HNRNPMP52272 730 aaKnown RBP eCLIP18.31■□□□□ 0.52
BRAT1-203ENST00000467558 TMF1P82094 1093 aa18.31■□□□□ 0.52
BRAT1-203ENST00000467558 ERICH3Q5RHP9 1530 aa18.31■□□□□ 0.52
BRAT1-203ENST00000467558 CFAP53Q96M91 514 aa18.31■□□□□ 0.52
BRAT1-203ENST00000467558 CC2D2AQ9P2K1 1620 aa18.3■□□□□ 0.52
BRAT1-203ENST00000467558 DHX57Q6P158 1386 aaKnown RBP18.29■□□□□ 0.52
BRAT1-203ENST00000467558 GGT6Q6P531 493 aa18.29■□□□□ 0.52
BRAT1-203ENST00000467558 IRX6P78412 446 aaPredicted RBP18.28■□□□□ 0.52
BRAT1-203ENST00000467558 AQRO60306 1485 aaKnown RBP eCLIP18.28■□□□□ 0.526e-7■■■■□ 22.8
BRAT1-203ENST00000467558 TOP2BQ02880 1626 aa18.27■□□□□ 0.52
BRAT1-203ENST00000467558 CCER2I3L3R5 266 aa18.27■□□□□ 0.51
BRAT1-203ENST00000467558 POGKQ9P215 609 aa18.27■□□□□ 0.51
BRAT1-203ENST00000467558 NPM2Q86SE8 214 aaKnown RBP18.26■□□□□ 0.51
BRAT1-203ENST00000467558 NESP48681 1621 aa18.26■□□□□ 0.51
BRAT1-203ENST00000467558 PRXQ9BXM0 1461 aa18.24■□□□□ 0.51
BRAT1-203ENST00000467558 L3MBTL2Q969R5 705 aa18.24■□□□□ 0.51
BRAT1-203ENST00000467558 SPAG9O60271 1321 aaKnown RBP18.24■□□□□ 0.51
BRAT1-203ENST00000467558 CUX1P39880 1505 aa18.22■□□□□ 0.51
BRAT1-203ENST00000467558 GRIN2BQ13224 1484 aa18.22■□□□□ 0.51
BRAT1-203ENST00000467558 UPF2Q9HAU5 1272 aaKnown RBP18.21■□□□□ 0.51
BRAT1-203ENST00000467558 KIF3BO15066 747 aa18.2■□□□□ 0.5
BRAT1-203ENST00000467558 TOPBP1Q92547 1522 aa18.2■□□□□ 0.5
BRAT1-203ENST00000467558 SUPT16HQ9Y5B9 1047 aaKnown RBP18.2■□□□□ 0.5
BRAT1-203ENST00000467558 CC2D1BQ5T0F9 858 aaKnown RBP18.19■□□□□ 0.5
BRAT1-203ENST00000467558 HDGFP51858 240 aaKnown RBP18.18■□□□□ 0.5
BRAT1-203ENST00000467558 CASKIN1Q8WXD9 1431 aa18.18■□□□□ 0.5
BRAT1-203ENST00000467558 ARAP1Q96P48 1450 aa18.18■□□□□ 0.5
BRAT1-203ENST00000467558 LRRC9Q6ZRR7 1453 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms