RNA–Protein interactions for RNA: ENST00000467558.5

BRAT1-203, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 5

Gene BRAT1, Length 4,440 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-203ENST00000467558 NISCHQ9Y2I1 1504 aa25.31■■□□□ 1.64
BRAT1-203ENST00000467558 DCAF8L2P0C7V8 631 aa24.52■■□□□ 1.52
BRAT1-203ENST00000467558 SUPT5HO00267 1087 aaKnown RBP23.36■■□□□ 1.33
BRAT1-203ENST00000467558 SHROOM4Q9ULL8 1493 aa23.25■■□□□ 1.31
BRAT1-203ENST00000467558 EHMT2Q96KQ7 1210 aa22.07■■□□□ 1.12
BRAT1-203ENST00000467558 FAM9AQ8IZU1 332 aaPredicted RBP21.87■■□□□ 1.09
BRAT1-203ENST00000467558 TRIM41Q8WV44 630 aa21.77■■□□□ 1.08
BRAT1-203ENST00000467558 APLP2Q06481 763 aa21.7■■□□□ 1.06
BRAT1-203ENST00000467558 PCGF6Q9BYE7 350 aa21.45■■□□□ 1.03
BRAT1-203ENST00000467558 ABCC9O60706 1549 aa21.42■■□□□ 1.02
BRAT1-203ENST00000467558 UBTFP17480 764 aaKnown RBP21.3■■□□□ 1
BRAT1-203ENST00000467558 TTBK1Q5TCY1 1321 aaPredicted RBP21.29■■□□□ 1
BRAT1-203ENST00000467558 CHIC1Q5VXU3 224 aa21.26■□□□□ 0.99
BRAT1-203ENST00000467558 RANGAP1P46060 587 aaPredicted RBP21.25■□□□□ 0.99
BRAT1-203ENST00000467558 ZEB1P37275 1124 aaPredicted RBP21.05■□□□□ 0.96
BRAT1-203ENST00000467558 ZCCHC6Q5VYS8 1495 aaKnown RBP21.04■□□□□ 0.96
BRAT1-203ENST00000467558 PABPN1Q86U42 306 aaKnown RBP eCLIP21.02■□□□□ 0.96
BRAT1-203ENST00000467558 CCDC180Q9P1Z9 1646 aa21.02■□□□□ 0.96
BRAT1-203ENST00000467558 ATP1B4Q9UN42 357 aaPredicted RBP21■□□□□ 0.95
BRAT1-203ENST00000467558 CCER1Q8TC90 406 aaPredicted RBP20.96■□□□□ 0.95
BRAT1-203ENST00000467558 LOC105371045A0A1W2PR82 267 aa20.95■□□□□ 0.94
BRAT1-203ENST00000467558 TRIM26Q12899 539 aaPredicted RBP20.86■□□□□ 0.93
BRAT1-203ENST00000467558 PPARGC1BQ86YN6 1023 aaKnown RBP20.8■□□□□ 0.92
BRAT1-203ENST00000467558 SCRIBQ14160 1630 aa20.63■□□□□ 0.89
BRAT1-203ENST00000467558 PELP1Q8IZL8 1130 aaKnown RBP20.63■□□□□ 0.89
BRAT1-203ENST00000467558 HRCP23327 699 aa20.5■□□□□ 0.87
BRAT1-203ENST00000467558 CENPBP07199 599 aaPredicted RBP20.47■□□□□ 0.87
BRAT1-203ENST00000467558 ITGAEP38570 1179 aa20.39■□□□□ 0.85
BRAT1-203ENST00000467558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.39■□□□□ 0.85
BRAT1-203ENST00000467558 HNRNPUL2Q1KMD3 747 aaKnown RBP20.39■□□□□ 0.85
BRAT1-203ENST00000467558 RB1CC1Q8TDY2 1594 aa20.33■□□□□ 0.84
BRAT1-203ENST00000467558 NACADO15069 1562 aa20.28■□□□□ 0.84
BRAT1-203ENST00000467558 CSRNP3Q8WYN3 585 aa20.28■□□□□ 0.84
BRAT1-203ENST00000467558 DCAF1Q9Y4B6 1507 aa20.25■□□□□ 0.83
BRAT1-203ENST00000467558 RSF1Q96T23 1441 aaPredicted RBP20.14■□□□□ 0.82
BRAT1-203ENST00000467558 YTHDC1Q96MU7 727 aaKnown RBP20.06■□□□□ 0.8
BRAT1-203ENST00000467558 FAM50AQ14320 339 aaKnown RBP20.05■□□□□ 0.8
BRAT1-203ENST00000467558 MYT1LQ9UL68 1186 aa20.04■□□□□ 0.8
BRAT1-203ENST00000467558 FBLN2P98095 1184 aa19.93■□□□□ 0.78
BRAT1-203ENST00000467558 NEFLP07196 543 aa19.92■□□□□ 0.78
BRAT1-203ENST00000467558 MYO15BQ96JP2 1530 aa19.89■□□□□ 0.77
BRAT1-203ENST00000467558 P3H3Q8IVL6 736 aa19.87■□□□□ 0.77
BRAT1-203ENST00000467558 BAZ1AQ9NRL2 1556 aaPredicted RBP19.84■□□□□ 0.77
BRAT1-203ENST00000467558 TRIM52Q96A61 297 aa19.8■□□□□ 0.76
BRAT1-203ENST00000467558 CECR2Q9BXF3 1484 aa19.8■□□□□ 0.76
BRAT1-203ENST00000467558 DIEXFQ68CQ4 756 aaKnown RBP19.79■□□□□ 0.76
BRAT1-203ENST00000467558 POLR3GLQ9BT43 218 aa19.79■□□□□ 0.76
BRAT1-203ENST00000467558 BAZ1BQ9UIG0 1483 aaKnown RBP19.78■□□□□ 0.76
BRAT1-203ENST00000467558 EEA1Q15075 1411 aa19.73■□□□□ 0.75
BRAT1-203ENST00000467558 NEUROD1Q13562 356 aa19.71■□□□□ 0.75
BRAT1-203ENST00000467558 WRNQ14191 1432 aaPredicted RBP eCLIP19.69■□□□□ 0.74
BRAT1-203ENST00000467558 CDK11AQ9UQ88 783 aaPredicted RBP19.67■□□□□ 0.74
BRAT1-203ENST00000467558 ARID3CA6NKF2 412 aa19.63■□□□□ 0.73
BRAT1-203ENST00000467558 CLIP1P30622 1438 aa19.58■□□□□ 0.73
BRAT1-203ENST00000467558 ERICH6Q7L0X2 663 aa19.58■□□□□ 0.72
BRAT1-203ENST00000467558 MROH2BQ7Z745 1585 aa19.57■□□□□ 0.72
BRAT1-203ENST00000467558 GOLGA3Q08378 1498 aa19.55■□□□□ 0.72
BRAT1-203ENST00000467558 ZNF316A6NFI3 1004 aaPredicted RBP19.54■□□□□ 0.72
BRAT1-203ENST00000467558 CNGB1Q14028 1251 aaPredicted RBP19.54■□□□□ 0.72
BRAT1-203ENST00000467558 CEP162Q5TB80 1403 aa19.49■□□□□ 0.71
BRAT1-203ENST00000467558 KIF27Q86VH2 1401 aa19.48■□□□□ 0.71
BRAT1-203ENST00000467558 ZNF777Q9ULD5 760 aaPredicted RBP19.48■□□□□ 0.71
BRAT1-203ENST00000467558 TNIKQ9UKE5 1360 aa19.46■□□□□ 0.71
BRAT1-203ENST00000467558 ZNF326Q5BKZ1 582 aaKnown RBP19.43■□□□□ 0.7
BRAT1-203ENST00000467558 CEP164Q9UPV0 1460 aa19.43■□□□□ 0.7
BRAT1-203ENST00000467558 CHMP7Q8WUX9 453 aaPredicted RBP19.41■□□□□ 0.7
BRAT1-203ENST00000467558 CCDC88BA6NC98 1476 aa19.4■□□□□ 0.7
BRAT1-203ENST00000467558 ANP32CO43423 234 aa19.38■□□□□ 0.69
BRAT1-203ENST00000467558 MTUS2Q5JR59 1369 aa19.38■□□□□ 0.69
BRAT1-203ENST00000467558 SMARCA2P51531 1590 aa19.37■□□□□ 0.69
BRAT1-203ENST00000467558 SLC4A1APQ9BWU0 796 aaKnown RBP19.36■□□□□ 0.69
BRAT1-203ENST00000467558 WIZO95785 1651 aa19.3■□□□□ 0.68
BRAT1-203ENST00000467558 TONSLQ96HA7 1378 aa19.28■□□□□ 0.68
BRAT1-203ENST00000467558 SOGA1O94964 1423 aa19.28■□□□□ 0.68
BRAT1-203ENST00000467558 TOP2AP11388 1531 aaKnown RBP19.27■□□□□ 0.67
BRAT1-203ENST00000467558 NPM1P06748 294 aaKnown RBP eCLIP19.24■□□□□ 0.67
BRAT1-203ENST00000467558 CHIC2Q9UKJ5 165 aa19.24■□□□□ 0.67
BRAT1-203ENST00000467558 TSPY4P0CV99 314 aa19.2■□□□□ 0.66
BRAT1-203ENST00000467558 TSPY10P0CW01 314 aa19.2■□□□□ 0.66
BRAT1-203ENST00000467558 ABCC8Q09428 1581 aa19.19■□□□□ 0.66
BRAT1-203ENST00000467558 CUX2O14529 1486 aa19.18■□□□□ 0.66
BRAT1-203ENST00000467558 CARMIL1Q5VZK9 1371 aa19.17■□□□□ 0.66
BRAT1-203ENST00000467558 ATAD2BQ9ULI0 1458 aa19.15■□□□□ 0.66
BRAT1-203ENST00000467558 SMARCA4P51532 1647 aa19.13■□□□□ 0.65
BRAT1-203ENST00000467558 ERCC6Q03468 1493 aa19.12■□□□□ 0.65
BRAT1-203ENST00000467558 PLEKHD1A6NEE1 506 aa19.11■□□□□ 0.65
BRAT1-203ENST00000467558 GTF3C3Q9Y5Q9 886 aa19.11■□□□□ 0.65
BRAT1-203ENST00000467558 FHAD1B1AJZ9 1412 aa19.07■□□□□ 0.64
BRAT1-203ENST00000467558 PDS5BQ9NTI5 1447 aa19.07■□□□□ 0.64
BRAT1-203ENST00000467558 CADPSQ9ULU8 1353 aa19.05■□□□□ 0.64
BRAT1-203ENST00000467558 DAXXQ9UER7 740 aaPredicted RBP19.04■□□□□ 0.64
BRAT1-203ENST00000467558 RRP7BPQ9NSQ0 103 aa19.04■□□□□ 0.64
BRAT1-203ENST00000467558 ACIN1Q9UKV3 1341 aaKnown RBP19.03■□□□□ 0.64
BRAT1-203ENST00000467558 DDX10Q13206 875 aaKnown RBP19.02■□□□□ 0.63
BRAT1-203ENST00000467558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.01■□□□□ 0.632e-6■□□□□ 8.5
BRAT1-203ENST00000467558 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
BRAT1-203ENST00000467558 CFDP1Q9UEE9 299 aaPredicted RBP18.98■□□□□ 0.63
BRAT1-203ENST00000467558 ESF1Q9H501 851 aaKnown RBP18.97■□□□□ 0.63
BRAT1-203ENST00000467558 CHGAP10645 457 aaKnown RBP18.95■□□□□ 0.62
BRAT1-203ENST00000467558 KCNH8Q96L42 1107 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms