RNA–Protein interactions for RNA: ENST00000465408.1

UBE4B-205, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 355 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-205ENST00000465408 SHROOM2Q13796 1616 aa13.8□□□□□ -0.2
UBE4B-205ENST00000465408 CCDC88BA6NC98 1476 aa13.79□□□□□ -0.2
UBE4B-205ENST00000465408 PBRM1Q86U86 1689 aa13.76□□□□□ -0.21
UBE4B-205ENST00000465408 NPM1P06748 294 aaKnown RBP eCLIP13.76□□□□□ -0.21
UBE4B-205ENST00000465408 COL17A1Q9UMD9 1497 aaPredicted RBP13.74□□□□□ -0.21
UBE4B-205ENST00000465408 FGD5Q6ZNL6 1462 aa13.74□□□□□ -0.21
UBE4B-205ENST00000465408 NUP160Q12769 1436 aa13.73□□□□□ -0.21
UBE4B-205ENST00000465408 GRIN2AQ12879 1464 aa13.73□□□□□ -0.21
UBE4B-205ENST00000465408 PPRC1Q5VV67 1664 aaKnown RBP13.72□□□□□ -0.21
UBE4B-205ENST00000465408 TOP2BQ02880 1626 aa13.72□□□□□ -0.21
UBE4B-205ENST00000465408 ADCY10Q96PN6 1610 aa13.72□□□□□ -0.21
UBE4B-205ENST00000465408 CERKQ8TCT0 537 aa13.71□□□□□ -0.21
UBE4B-205ENST00000465408 PRG4Q92954 1404 aaPredicted RBP13.69□□□□□ -0.22
UBE4B-205ENST00000465408 LOC105371045A0A1W2PR82 267 aa13.6□□□□□ -0.23
UBE4B-205ENST00000465408 ABCA5Q8WWZ7 1642 aa13.6□□□□□ -0.23
UBE4B-205ENST00000465408 PCF11O94913 1555 aaKnown RBP13.59□□□□□ -0.23
UBE4B-205ENST00000465408 FAM9AQ8IZU1 332 aaPredicted RBP13.58□□□□□ -0.24
UBE4B-205ENST00000465408 ADAMTS12P58397 1594 aa13.58□□□□□ -0.24
UBE4B-205ENST00000465408 CUX1P39880 1505 aa13.56□□□□□ -0.24
UBE4B-205ENST00000465408 JPH4Q96JJ6 628 aa13.56□□□□□ -0.24
UBE4B-205ENST00000465408 GLI2P10070 1586 aa13.56□□□□□ -0.24
UBE4B-205ENST00000465408 PTPRMP28827 1452 aa13.55□□□□□ -0.24
UBE4B-205ENST00000465408 KIF21BO75037 1637 aa13.51□□□□□ -0.25
UBE4B-205ENST00000465408 ABCA10Q8WWZ4 1543 aa13.49□□□□□ -0.25
UBE4B-205ENST00000465408 HSPA2P54652 639 aa13.49□□□□□ -0.25
UBE4B-205ENST00000465408 ASXL2Q76L83 1435 aa13.48□□□□□ -0.25
UBE4B-205ENST00000465408 FHAD1B1AJZ9 1412 aa13.47□□□□□ -0.25
UBE4B-205ENST00000465408 MAP3K4Q9Y6R4 1608 aa13.46□□□□□ -0.25
UBE4B-205ENST00000465408 TEX14Q8IWB6 1497 aa13.46□□□□□ -0.25
UBE4B-205ENST00000465408 ADAMTSL3P82987 1691 aa13.45□□□□□ -0.26
UBE4B-205ENST00000465408 PLB1Q6P1J6 1458 aa13.44□□□□□ -0.26
UBE4B-205ENST00000465408 WRNQ14191 1432 aaPredicted RBP eCLIP13.44□□□□□ -0.26
UBE4B-205ENST00000465408 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
UBE4B-205ENST00000465408 RUSC2Q8N2Y8 1516 aa13.43□□□□□ -0.26
UBE4B-205ENST00000465408 ABCC2Q92887 1545 aa13.4□□□□□ -0.26
UBE4B-205ENST00000465408 EPRSP07814 1512 aaKnown RBP13.39□□□□□ -0.27
UBE4B-205ENST00000465408 MADDQ8WXG6 1647 aa13.35□□□□□ -0.27
UBE4B-205ENST00000465408 CUL7Q14999 1698 aa13.34□□□□□ -0.27
UBE4B-205ENST00000465408 KIAA0586Q9BVV6 1533 aa13.34□□□□□ -0.27
UBE4B-205ENST00000465408 TTBK1Q5TCY1 1321 aaPredicted RBP13.3□□□□□ -0.28
UBE4B-205ENST00000465408 PTPRGP23470 1445 aa13.3□□□□□ -0.28
UBE4B-205ENST00000465408 BCORL1Q5H9F3 1711 aa13.29□□□□□ -0.28
UBE4B-205ENST00000465408 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
UBE4B-205ENST00000465408 EEA1Q15075 1411 aa13.28□□□□□ -0.28
UBE4B-205ENST00000465408 RIMS1Q86UR5 1692 aaKnown RBP13.26□□□□□ -0.29
UBE4B-205ENST00000465408 MED1Q15648 1581 aaPredicted RBP13.25□□□□□ -0.29
UBE4B-205ENST00000465408 CSRNP3Q8WYN3 585 aa13.25□□□□□ -0.29
UBE4B-205ENST00000465408 BIVM-ERCC5R4GMW8 1640 aa13.24□□□□□ -0.29
UBE4B-205ENST00000465408 PLPPR3Q6T4P5 718 aa13.23□□□□□ -0.29
UBE4B-205ENST00000465408 UHRF1BP1LA0JNW5 1464 aa13.23□□□□□ -0.29
UBE4B-205ENST00000465408 MAGI3Q5TCQ9 1506 aa13.22□□□□□ -0.29
UBE4B-205ENST00000465408 KDM5BQ9UGL1 1544 aa13.19□□□□□ -0.3
UBE4B-205ENST00000465408 CD109Q6YHK3 1445 aa13.19□□□□□ -0.3
UBE4B-205ENST00000465408 LTBP4Q8N2S1 1624 aa13.18□□□□□ -0.3
UBE4B-205ENST00000465408 STRCQ7RTU9 1775 aa13.18□□□□□ -0.3
UBE4B-205ENST00000465408 YEATS2Q9ULM3 1422 aa13.18□□□□□ -0.3
UBE4B-205ENST00000465408 ZCCHC11Q5TAX3 1644 aaKnown RBP13.17□□□□□ -0.3
UBE4B-205ENST00000465408 ARID4BQ4LE39 1312 aaPredicted RBP13.17□□□□□ -0.3
UBE4B-205ENST00000465408 UACAQ9BZF9 1416 aa13.17□□□□□ -0.3
UBE4B-205ENST00000465408 TNIKQ9UKE5 1360 aa13.17□□□□□ -0.3
UBE4B-205ENST00000465408 GOLGA3Q08378 1498 aa13.16□□□□□ -0.3
UBE4B-205ENST00000465408 IQSEC2Q5JU85 1478 aa13.16□□□□□ -0.3
UBE4B-205ENST00000465408 ARAP3Q8WWN8 1544 aa13.15□□□□□ -0.3
UBE4B-205ENST00000465408 PCGF6Q9BYE7 350 aa13.15□□□□□ -0.3
UBE4B-205ENST00000465408 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
UBE4B-205ENST00000465408 WDR7Q9Y4E6 1490 aa13.14□□□□□ -0.31
UBE4B-205ENST00000465408 CFAP43Q8NDM7 1665 aa13.14□□□□□ -0.31
UBE4B-205ENST00000465408 UBTFP17480 764 aaKnown RBP13.13□□□□□ -0.31
UBE4B-205ENST00000465408 CEP162Q5TB80 1403 aa13.12□□□□□ -0.31
UBE4B-205ENST00000465408 UBAP1LF5GYI3 381 aa13.09□□□□□ -0.31
UBE4B-205ENST00000465408 RAPGEF3O95398 923 aa13.08□□□□□ -0.32
UBE4B-205ENST00000465408 PHF23Q9BUL5 403 aaPredicted RBP13.08□□□□□ -0.32
UBE4B-205ENST00000465408 PTPRTO14522 1441 aa13.07□□□□□ -0.32
UBE4B-205ENST00000465408 CARMIL2Q6F5E8 1435 aa13.07□□□□□ -0.32
UBE4B-205ENST00000465408 KIF27Q86VH2 1401 aa13.07□□□□□ -0.32
UBE4B-205ENST00000465408 RAPGEF2Q9Y4G8 1499 aa13.07□□□□□ -0.32
UBE4B-205ENST00000465408 PREX1Q8TCU6 1659 aa13.06□□□□□ -0.32
UBE4B-205ENST00000465408 HSPA1LP34931 641 aa13.05□□□□□ -0.32
UBE4B-205ENST00000465408 KCNH8Q96L42 1107 aa13.05□□□□□ -0.32
UBE4B-205ENST00000465408 TRIM26Q12899 539 aaPredicted RBP13.04□□□□□ -0.32
UBE4B-205ENST00000465408 FRMPD1Q5SYB0 1578 aa13.03□□□□□ -0.32
UBE4B-205ENST00000465408 PRXQ9BXM0 1461 aa13.02□□□□□ -0.33
UBE4B-205ENST00000465408 PPARGC1BQ86YN6 1023 aaKnown RBP13.01□□□□□ -0.33
UBE4B-205ENST00000465408 TTC37Q6PGP7 1564 aa13.01□□□□□ -0.33
UBE4B-205ENST00000465408 ARHGEF40Q8TER5 1519 aa13□□□□□ -0.33
UBE4B-205ENST00000465408 SIGLEC1Q9BZZ2 1709 aa12.99□□□□□ -0.33
UBE4B-205ENST00000465408 SRCAPQ6ZRS2 3230 aa12.98□□□□□ -0.33
UBE4B-205ENST00000465408 DISP1Q96F81 1524 aa12.98□□□□□ -0.33
UBE4B-205ENST00000465408 CLIP1P30622 1438 aa12.97□□□□□ -0.33
UBE4B-205ENST00000465408 FER1L4A9Z1Z3 1794 aa12.97□□□□□ -0.33
UBE4B-205ENST00000465408 RANGAP1P46060 587 aaPredicted RBP12.96□□□□□ -0.33
UBE4B-205ENST00000465408 CEBPAP49715 358 aaPredicted RBP12.95□□□□□ -0.34
UBE4B-205ENST00000465408 POGZQ7Z3K3 1410 aa12.95□□□□□ -0.34
UBE4B-205ENST00000465408 IGF1RP08069 1367 aa12.94□□□□□ -0.34
UBE4B-205ENST00000465408 MLECQ14165 292 aa12.94□□□□□ -0.34
UBE4B-205ENST00000465408 UHRF1BP1Q6BDS2 1440 aa12.94□□□□□ -0.34
UBE4B-205ENST00000465408 PHLDB1Q86UU1 1377 aa12.94□□□□□ -0.34
UBE4B-205ENST00000465408 FANCAO15360 1455 aa12.93□□□□□ -0.34
UBE4B-205ENST00000465408 RGS17Q9UGC6 210 aaPredicted RBP12.93□□□□□ -0.34
UBE4B-205ENST00000465408 SCAF1Q9H7N4 1312 aaKnown RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms